Guide to the Human Genome
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Name: LRRC27 Sequence: fasta or formatted (530aa) NCBI GI: 55741567
Description:

leucine rich repeat containing 27 isoform a

Referenced in:

Leucine-rich Repeat Family

Other entries for this name:
alt mRNA [530aa] leucine rich repeat containing 27 isoform a
alt prot [383aa] leucine rich repeat containing 27 isoform b
alt prot [383aa] leucine rich repeat containing 27 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         42           3
 C cysteine            0.6          3           1
 D aspartate           3.4         18           1
 E glutamate           9.4         50           3
 F phenylalanine       2.3         12           2
 G glycine             4.3         23           2
 H histidine           2.1         11           1
 I isoleucine          3.4         18           2
 K lysine              7.0         37           1
 L leucine            13.8         73           3
 M methionine          2.5         13           1
 N asparagine          3.6         19           1
 P proline             7.7         41           2
 Q glutamine           6.0         32           2
 R arginine            8.9         47           3
 S serine              7.5         40           3
 T threonine           3.0         16           2
 V valine              4.7         25           2
 W tryptophan          0.9          5           1
 Y tyrosine            0.9          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine rich repeat containing 27 isoform a 
LRRC27                1.000   leucine rich repeat containing 27 isoform a 
LRRC27                0.671   leucine rich repeat containing 27 isoform b 
LRRC27                0.585   leucine rich repeat containing 27 isoform c 
LRSAM1                0.050   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.050   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.050   leucine rich repeat and sterile alpha motif containi...
LRRIQ4                0.044   leucine-rich repeats and IQ motif containing 4 [Hom...
CNOT6                 0.033   CCR4-NOT transcription complex, subunit 6 
CNOT6L                0.033   CCR4-NOT transcription complex, subunit 6-like [Hom...
LRRC18                0.031   leucine rich repeat containing 18 
SHOC2                 0.031   soc-2 suppressor of clear homolog 
LRDD                  0.030   leucine rich repeat and death domain containing prot...
LRDD                  0.030   leucine rich repeat and death domain containing prot...
LRRC28                0.030   leucine rich repeat containing 28 
FLII                  0.029   flightless I homolog 
LRRC8B                0.029   leucine rich repeat containing 8 family, member B [...
LRRC8B                0.029   leucine rich repeat containing 8 family, member B [H...
LRRC8A                0.028   leucine rich repeat containing 8 family, member A [H...
LRRC8A                0.028   leucine rich repeat containing 8 family, member A [...
LRRC8A                0.028   leucine rich repeat containing 8 family, member A [...
LRRC1                 0.028   leucine rich repeat containing 1 
ERBB2IP               0.027   ERBB2 interacting protein isoform 7 
ERBB2IP               0.027   ERBB2 interacting protein isoform 2 
LRRC69                0.027   leucine rich repeat containing 69 
LRDD                  0.027   leucine rich repeat and death domain containing prot...
RSU1                  0.027   ras suppressor protein 1 isoform 1 
LRRC40                0.027   leucine rich repeat containing 40 
LRRC39                0.026   leucine rich repeat containing 39 
LRRC59                0.025   leucine rich repeat containing 59 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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