Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LECT1 Sequence: fasta or formatted (334aa) NCBI GI: 5901932
Description:

leukocyte cell derived chemotaxin 1 isoform 1 precursor

Referenced in:

Bone and Related Tissues

Other entries for this name:
alt prot [333aa] leukocyte cell derived chemotaxin 1 isoform 2 precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         21           1
 C cysteine            3.3         11           2
 D aspartate           4.2         14           2
 E glutamate           6.6         22           2
 F phenylalanine       3.3         11           1
 G glycine             8.1         27           2
 H histidine           1.8          6           1
 I isoleucine          6.6         22           1
 K lysine              6.0         20           1
 L leucine             6.3         21           3
 M methionine          2.4          8           1
 N asparagine          4.5         15           2
 P proline             7.2         24           2
 Q glutamine           3.6         12           2
 R arginine            5.1         17           2
 S serine              7.5         25           2
 T threonine           4.2         14           3
 V valine              7.5         25           2
 W tryptophan          1.8          6           2
 Y tyrosine            3.9         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leukocyte cell derived chemotaxin 1 isoform 1 precurs... 
LECT1                 0.990   leukocyte cell derived chemotaxin 1 isoform 2 precur...
TNMD                  0.252   tenomodulin 
SFTPC                 0.025   surfactant protein C 
GKN2                  0.015   trefoil factor interactions(z) 1 
CCDC84                0.010   coiled-coil domain containing 84 
NACAD                 0.009   NAC alpha domain containing 
NACAD                 0.009   PREDICTED: NAC alpha domain containing 
NACAD                 0.009   PREDICTED: NAC alpha domain containing 
NACAD                 0.009   PREDICTED: NAC alpha domain containing 
NACAD                 0.009   PREDICTED: NAC alpha domain containing 
C2orf44               0.009   hypothetical protein LOC80304 isoform 2 
C2orf44               0.009   hypothetical protein LOC80304 isoform 1 
ITM2C                 0.009   integral membrane protein 2C isoform 1 
GKN1                  0.007   18 kDa antrum mucosa protein 
GFRA2                 0.007   GDNF family receptor alpha 2 preproprotein 
ZNF646                0.006   zinc finger protein 646 
ITM2C                 0.006   integral membrane protein 2C isoform 3 
MAP1A                 0.006   microtubule-associated protein 1A 
OSBP2                 0.006   oxysterol binding protein 2 isoform a 
OTOG                  0.004   PREDICTED: otogelin isoform 1 
OTOG                  0.004   PREDICTED: otogelin isoform 2 
OTOG                  0.004   PREDICTED: otogelin isoform 2 
OTOG                  0.004   PREDICTED: otogelin isoform 1 
OTOG                  0.004   PREDICTED: otogelin isoform 2 
OTOG                  0.004   PREDICTED: otogelin isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press