Guide to the Human Genome
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Name: UBA3 Sequence: fasta or formatted (463aa) NCBI GI: 38045942
Description:

ubiquitin-activating enzyme 3 isoform 1

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [449aa] ubiquitin-activating enzyme 3 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.3         29           2
 C cysteine            2.6         12           1
 D aspartate           5.4         25           2
 E glutamate           7.1         33           2
 F phenylalanine       4.8         22           1
 G glycine             6.5         30           2
 H histidine           1.7          8           1
 I isoleucine          6.5         30           2
 K lysine              4.8         22           2
 L leucine            10.2         47           2
 M methionine          1.9          9           1
 N asparagine          5.0         23           2
 P proline             6.0         28           2
 Q glutamine           4.3         20           1
 R arginine            5.2         24           3
 S serine              5.2         24           2
 T threonine           6.0         28           2
 V valine              6.9         32           2
 W tryptophan          1.1          5           1
 Y tyrosine            2.6         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-activating enzyme 3 isoform 1 
UBA3                  0.962   ubiquitin-activating enzyme 3 isoform 2 
UBA2                  0.147   SUMO-1 activating enzyme subunit 2 
UBA1                  0.100   ubiquitin-activating enzyme E1 
UBA1                  0.100   ubiquitin-activating enzyme E1 
UBA6                  0.100   ubiquitin-activating enzyme E1-like 2 
UBA7                  0.088   ubiquitin-like modifier activating enzyme 7 
MOCS3                 0.035   molybdenum cofactor synthesis 3 
SAE1                  0.034   SUMO1 activating enzyme subunit 1 isoform c 
SAE1                  0.034   SUMO1 activating enzyme subunit 1 isoform b 
SAE1                  0.034   SUMO1 activating enzyme subunit 1 isoform a 
SAE1                  0.034   SUMO1 activating enzyme subunit 1 isoform a 
NAE1                  0.026   NEDD8 activating enzyme E1 subunit 1 isoform b [Homo...
NAE1                  0.026   NEDD8 activating enzyme E1 subunit 1 isoform a 
UBA5                  0.025   ubiquitin-activating enzyme 5 isoform 1 
UBA5                  0.024   ubiquitin-activating enzyme 5 isoform 2 
ATG7                  0.022   APG7 autophagy 7-like isoform c 
ATG7                  0.022   APG7 autophagy 7-like isoform b 
ATG7                  0.022   APG7 autophagy 7-like isoform a 
GPR126                0.008   G protein-coupled receptor 126 beta 1 precursor [Hom...
GPR126                0.008   G protein-coupled receptor 126 beta 2 precursor [Hom...
USP16                 0.008   ubiquitin specific protease 16 isoform a 
USP16                 0.008   ubiquitin specific protease 16 isoform a 
POLG2                 0.007   DNA-directed DNA polymerase gamma 2 
KLHL33                0.007   kelch-like 33 
ASXL2                 0.005   additional sex combs like 2 
USP16                 0.005   ubiquitin specific protease 16 isoform b 
TNFAIP3               0.005   tumor necrosis factor, alpha-induced protein 3 
TOP1                  0.004   DNA topoisomerase I 
SARDH                 0.004   sarcosine dehydrogenase precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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