Guide to the Human Genome
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Name: UBA1 Sequence: fasta or formatted (1058aa) NCBI GI: 23510340
Description:

ubiquitin-activating enzyme E1

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt mRNA [1058aa] ubiquitin-activating enzyme E1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         81           4
 C cysteine            1.8         19           2
 D aspartate           6.0         64           3
 E glutamate           6.2         66           2
 F phenylalanine       4.9         52           2
 G glycine             6.5         69           2
 H histidine           2.2         23           2
 I isoleucine          3.8         40           2
 K lysine              5.0         53           2
 L leucine            10.1        107           2
 M methionine          2.3         24           1
 N asparagine          4.4         47           2
 P proline             5.7         60           2
 Q glutamine           5.6         59           2
 R arginine            4.9         52           2
 S serine              6.6         70           3
 T threonine           4.6         49           3
 V valine              7.8         83           3
 W tryptophan          0.9         10           1
 Y tyrosine            2.8         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-activating enzyme E1 
UBA1                  1.000   ubiquitin-activating enzyme E1 
UBA7                  0.397   ubiquitin-like modifier activating enzyme 7 
UBA6                  0.347   ubiquitin-activating enzyme E1-like 2 
UBA2                  0.063   SUMO-1 activating enzyme subunit 2 
SAE1                  0.046   SUMO1 activating enzyme subunit 1 isoform a 
SAE1                  0.046   SUMO1 activating enzyme subunit 1 isoform a 
UBA3                  0.044   ubiquitin-activating enzyme 3 isoform 2 
UBA3                  0.044   ubiquitin-activating enzyme 3 isoform 1 
SAE1                  0.039   SUMO1 activating enzyme subunit 1 isoform c 
SAE1                  0.039   SUMO1 activating enzyme subunit 1 isoform b 
NAE1                  0.026   NEDD8 activating enzyme E1 subunit 1 isoform a 
NAE1                  0.022   NEDD8 activating enzyme E1 subunit 1 isoform b [Homo...
MOCS3                 0.021   molybdenum cofactor synthesis 3 
UBA5                  0.013   ubiquitin-activating enzyme 5 isoform 2 
UBA5                  0.013   ubiquitin-activating enzyme 5 isoform 1 
NAE1                  0.007   NEDD8 activating enzyme E1 subunit 1 isoform c [Homo...
ZBTB7A                0.004   zinc finger and BTB domain containing 7A 
RBM38                 0.003   RNA-binding region containing protein 1 isoform b [H...
RBM38                 0.003   RNA-binding region containing protein 1 isoform a [H...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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