Guide to the Human Genome
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Name: ATG7 Sequence: fasta or formatted (703aa) NCBI GI: 5453668
Description:

APG7 autophagy 7-like isoform a

Referenced in:

Additional Membrane Functions
Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [676aa] APG7 autophagy 7-like isoform b
alt prot [623aa] APG7 autophagy 7-like isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         59           3
 C cysteine            2.8         20           2
 D aspartate           6.0         42           2
 E glutamate           5.1         36           1
 F phenylalanine       5.1         36           2
 G glycine             6.5         46           3
 H histidine           2.0         14           1
 I isoleucine          3.4         24           2
 K lysine              5.3         37           2
 L leucine            12.4         87           3
 M methionine          2.4         17           1
 N asparagine          4.0         28           1
 P proline             5.8         41           2
 Q glutamine           3.8         27           2
 R arginine            4.4         31           2
 S serine              7.0         49           3
 T threonine           4.4         31           1
 V valine              6.7         47           2
 W tryptophan          1.4         10           1
 Y tyrosine            3.0         21           3
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   APG7 autophagy 7-like isoform a 
ATG7                  0.951   APG7 autophagy 7-like isoform b 
ATG7                  0.856   APG7 autophagy 7-like isoform c 
UBA2                  0.016   SUMO-1 activating enzyme subunit 2 
UBA3                  0.014   ubiquitin-activating enzyme 3 isoform 2 
UBA3                  0.014   ubiquitin-activating enzyme 3 isoform 1 
MOCS3                 0.010   molybdenum cofactor synthesis 3 
SAE1                  0.009   SUMO1 activating enzyme subunit 1 isoform c 
SAE1                  0.009   SUMO1 activating enzyme subunit 1 isoform b 
SAE1                  0.009   SUMO1 activating enzyme subunit 1 isoform a 
SAE1                  0.009   SUMO1 activating enzyme subunit 1 isoform a 
UBA7                  0.009   ubiquitin-like modifier activating enzyme 7 
UBA6                  0.006   ubiquitin-activating enzyme E1-like 2 
DUSP1                 0.006   dual specificity phosphatase 1 
ZDHHC11               0.004   zinc finger, DHHC-type containing 11 
SLCO2B1               0.004   solute carrier organic anion transporter family, me...
SLCO2B1               0.004   solute carrier organic anion transporter family, me...
SLCO2B1               0.004   solute carrier organic anion transporter family, memb...
C17orf75              0.004   hypothetical protein LOC64149 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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