Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: UBA6 Sequence: fasta or formatted (1052aa) NCBI GI: 150417996
Description:

ubiquitin-activating enzyme E1-like 2

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         72           3
 C cysteine            2.2         23           1
 D aspartate           5.6         59           3
 E glutamate           7.3         77           3
 F phenylalanine       5.1         54           2
 G glycine             5.1         54           2
 H histidine           2.9         31           2
 I isoleucine          6.4         67           2
 K lysine              7.2         76           2
 L leucine             9.8        103           2
 M methionine          1.7         18           1
 N asparagine          4.1         43           1
 P proline             5.3         56           2
 Q glutamine           3.8         40           2
 R arginine            3.4         36           2
 S serine              6.7         71           3
 T threonine           6.7         70           3
 V valine              6.2         65           2
 W tryptophan          1.1         12           1
 Y tyrosine            2.4         25           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin-activating enzyme E1-like 2 
UBA1                  0.348   ubiquitin-activating enzyme E1 
UBA1                  0.348   ubiquitin-activating enzyme E1 
UBA7                  0.265   ubiquitin-like modifier activating enzyme 7 
UBA2                  0.045   SUMO-1 activating enzyme subunit 2 
UBA3                  0.044   ubiquitin-activating enzyme 3 isoform 2 
UBA3                  0.044   ubiquitin-activating enzyme 3 isoform 1 
SAE1                  0.029   SUMO1 activating enzyme subunit 1 isoform c 
SAE1                  0.029   SUMO1 activating enzyme subunit 1 isoform b 
SAE1                  0.029   SUMO1 activating enzyme subunit 1 isoform a 
SAE1                  0.029   SUMO1 activating enzyme subunit 1 isoform a 
MOCS3                 0.019   molybdenum cofactor synthesis 3 
NAE1                  0.019   NEDD8 activating enzyme E1 subunit 1 isoform a 
NAE1                  0.016   NEDD8 activating enzyme E1 subunit 1 isoform b [Homo...
UBA5                  0.013   ubiquitin-activating enzyme 5 isoform 2 
UBA5                  0.013   ubiquitin-activating enzyme 5 isoform 1 
NAE1                  0.011   NEDD8 activating enzyme E1 subunit 1 isoform c [Homo...
ATG7                  0.004   APG7 autophagy 7-like isoform c 
ATG7                  0.004   APG7 autophagy 7-like isoform b 
ATG7                  0.004   APG7 autophagy 7-like isoform a 
TTN                   0.004   titin isoform N2-A 
TTN                   0.004   titin isoform novex-2 
TTN                   0.004   titin isoform novex-1 
TTN                   0.004   titin isoform N2-B 
ZNF280D               0.003   suppressor of hairy wing homolog 4 isoform 2 
ZNF280D               0.003   suppressor of hairy wing homolog 4 isoform 1 
CEACAM5               0.003   carcinoembryonic antigen-related cell adhesion molec...
FASN                  0.002   fatty acid synthase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press