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Search of human proteins with 37595555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37595555 ring finger protein 125 [Homo sapiens]
(232 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37595555 ring finger protein 125 [Homo sapiens] 488 e-138
gi|8923898 zinc finger protein 313 [Homo sapiens] 132 3e-31
gi|30520320 ring finger protein 166 [Homo sapiens] 124 9e-29
gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens] 103 1e-22
gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens] 58 6e-09
gi|22027630 TNF receptor-associated factor 6 [Homo sapiens] 57 2e-08
gi|4759254 TNF receptor-associated factor 6 [Homo sapiens] 57 2e-08
gi|22027627 TNF receptor-associated factor 5 [Homo sapiens] 54 9e-08
gi|77404348 TNF receptor-associated factor 5 [Homo sapiens] 54 9e-08
gi|11321603 TNF receptor-associated factor 5 [Homo sapiens] 54 9e-08
gi|22749269 ring finger protein 129 [Homo sapiens] 54 1e-07
gi|4557841 recombination activating gene 1 [Homo sapiens] 53 3e-07
gi|148528975 LON peptidase N-terminal domain and ring finger 2 [... 52 3e-07
gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo sap... 52 4e-07
gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo sap... 52 4e-07
gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo sap... 52 4e-07
gi|87241872 ring finger protein 151 [Homo sapiens] 52 4e-07
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 52 6e-07
gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens] 52 6e-07
gi|7706091 bifunctional apoptosis regulator [Homo sapiens] 52 6e-07
gi|73747840 LON peptidase N-terminal domain and ring finger 3 is... 51 7e-07
gi|37622896 LON peptidase N-terminal domain and ring finger 3 is... 51 7e-07
gi|60099474 tripartite motif-containing 61 [Homo sapiens] 50 1e-06
gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [H... 49 3e-06
gi|21071052 helicase-like transcription factor [Homo sapiens] 49 3e-06
gi|21071054 helicase-like transcription factor [Homo sapiens] 49 3e-06
gi|87080813 LON peptidase N-terminal domain and ring finger 1 [H... 49 3e-06
gi|68160937 tripartite motif-containing 25 [Homo sapiens] 48 6e-06
gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo s... 48 8e-06
gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo s... 48 8e-06
>gi|37595555 ring finger protein 125 [Homo sapiens]
Length = 232
Score = 488 bits (1255), Expect = e-138
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSC 60
MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSC
Sbjct: 1 MGSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSC 60
Query: 61 IATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQ 120
IATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQ
Sbjct: 61 IATSLKNNKWTCPYCRAYLPSEGVPATDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQ 120
Query: 121 KYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDEN 180
KYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDEN
Sbjct: 121 KYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDEN 180
Query: 181 PSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT 232
PSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT
Sbjct: 181 PSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRSLLEYVNHSNTT 232
>gi|8923898 zinc finger protein 313 [Homo sapiens]
Length = 228
Score = 132 bits (331), Expect = 3e-31
Identities = 66/206 (32%), Positives = 116/206 (56%), Gaps = 13/206 (6%)
Query: 31 PVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVA 90
P+ F C VCLEV +PV+ CGHVFC +C+ LK K C CR+ L + GV A ++
Sbjct: 23 PLGRFTCPVCLEVYEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRSAL-APGVRAVELE 81
Query: 91 KRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKY--GPLQELEETAAR---------C 139
++++S +C C LS++R+H+ TC KY + G +++ + +
Sbjct: 82 RQIESTETSCHGCRKNFFLSKIRSHVATCSKYQNYIMEGVKATIKDASLQPRNVPNRYTF 141
Query: 140 VCPFC-QRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTL 198
CP+C ++ ++ L++HC H ++ + V CP+C +P +P+ S + H+Q H
Sbjct: 142 PCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICASMPWGDPNYRSANFREHIQRRHRF 201
Query: 199 FYDDFIDFNIIEEALIRRVLDRSLLE 224
YD F+D+++ EE ++ +VL RS+++
Sbjct: 202 SYDTFVDYDVDEEDMMNQVLQRSIID 227
>gi|30520320 ring finger protein 166 [Homo sapiens]
Length = 237
Score = 124 bits (310), Expect = 9e-29
Identities = 70/206 (33%), Positives = 102/206 (49%), Gaps = 16/206 (7%)
Query: 35 FDCAVCLEVLHQPVRT-RCGHVFCRSCIATSLKNNKWTCPYCRA-YLPSEGVPATDVAKR 92
+ C +CLEV H+PV CGH FC C+ L+ CP CR + P + AT V K+
Sbjct: 31 YTCPICLEVYHRPVAIGSCGHTFCGECLQPCLQVPSPLCPLCRLPFDPKKVDKATHVEKQ 90
Query: 93 MKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYG-------------PLQELEETAARC 139
+ S C C+ V L++MR HI +C K ++ P+ +
Sbjct: 91 LSSYKAPCRGCNKKVTLAKMRVHISSCLKVQEQMANCPKFVPVVPTSQPIPSNIPNRSTF 150
Query: 140 VCPFC-QRELYEDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTL 198
CP+C R L + L+ HC+ HRS+ V CP+C +P +PS S + ++HL H
Sbjct: 151 ACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICSAMPWGDPSYKSANFLQHLLHRHKF 210
Query: 199 FYDDFIDFNIIEEALIRRVLDRSLLE 224
YD F+D++I EEA + L SL E
Sbjct: 211 SYDTFVDYSIDEEAAFQAALALSLSE 236
>gi|21361539 ring finger protein 138 isoform 1 [Homo sapiens]
Length = 245
Score = 103 bits (257), Expect = 1e-22
Identities = 66/225 (29%), Positives = 98/225 (43%), Gaps = 38/225 (16%)
Query: 35 FDCAVCLEVLHQPVRTR-CGHVFCRSCIATSLKNNKWTCPYCRAYLP--SEGVP--ATDV 89
F C VC EVL PVRT C HVFCR C T+++ + CP CR + P A D+
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHVFCRKCFLTAMRESGAHCPLCRGNVTRRERACPERALDL 75
Query: 90 AKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYG---------------------- 127
M+ +C C + MR H ++C+KY D+YG
Sbjct: 76 ENIMRKFSGSCRCCAKQIKFYRMRHHYKSCKKYQDEYGVSSIIPNFQISQDSVGNSNRSE 135
Query: 128 --------PLQELEETAARCV--CPFCQRELY-EDSLLDHCITHHRSERRPVFCPLCRLI 176
QE ++ CP CQ + LLDHC ++H + PV CP+C +
Sbjct: 136 TSTSDNTETYQENTSSSGHPTFKCPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSL 195
Query: 177 PDENPSSFSGSLIRHLQVSHTLFYDDFIDFNIIEEALIRRVLDRS 221
P +PS + + + HL H Y +F++ + EE + ++ S
Sbjct: 196 PWGDPSQITRNFVSHLNQRHQFDYGEFVNLQLDEETQYQTAVEES 240
>gi|38045934 ring finger protein 138 isoform 2 [Homo sapiens]
Length = 151
Score = 58.2 bits (139), Expect = 6e-09
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 141 CPFCQRELY-EDSLLDHCITHHRSERRPVFCPLCRLIPDENPSSFSGSLIRHLQVSHTLF 199
CP CQ + LLDHC ++H + PV CP+C +P +PS + + + HL H
Sbjct: 65 CPLCQESNFTRQRLLDHCNSNHLFQIVPVTCPICVSLPWGDPSQITRNFVSHLNQRHQFD 124
Query: 200 YDDFIDFNIIEEALIRRVLDRS 221
Y +F++ + EE + ++ S
Sbjct: 125 YGEFVNLQLDEETQYQTAVEES 146
Score = 27.7 bits (60), Expect = 8.7
Identities = 14/22 (63%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 35 FDCAVCLEVLHQPVR-TRCGHV 55
F C VC EVL PVR T C HV
Sbjct: 16 FYCPVCQEVLKTPVRTTACQHV 37
>gi|22027630 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 56.6 bits (135), Expect = 2e-08
Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 27 DPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPA 86
DP L + ++C +CL L + V+T CGH FC++CI S+++ CP L +
Sbjct: 61 DPPLE-SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 119
Query: 87 TDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARCV-----C 141
+ AKR +C CL +M L+ LE+ A C C
Sbjct: 120 DNFAKR--EILSLMVKCPNEGCLHKME---------------LRHLEDHQAHCEFALMDC 162
Query: 142 PFCQRELYEDSLLDHCITHHRSERRPVFCPLC 173
P CQR + + H + RR V C C
Sbjct: 163 PQCQRPFQKFHINIHILKD--CPRRQVSCDNC 192
>gi|4759254 TNF receptor-associated factor 6 [Homo sapiens]
Length = 522
Score = 56.6 bits (135), Expect = 2e-08
Identities = 43/152 (28%), Positives = 63/152 (41%), Gaps = 25/152 (16%)
Query: 27 DPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPA 86
DP L + ++C +CL L + V+T CGH FC++CI S+++ CP L +
Sbjct: 61 DPPLE-SKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 119
Query: 87 TDVAKRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARCV-----C 141
+ AKR +C CL +M L+ LE+ A C C
Sbjct: 120 DNFAKR--EILSLMVKCPNEGCLHKME---------------LRHLEDHQAHCEFALMDC 162
Query: 142 PFCQRELYEDSLLDHCITHHRSERRPVFCPLC 173
P CQR + + H + RR V C C
Sbjct: 163 PQCQRPFQKFHINIHILKD--CPRRQVSCDNC 192
>gi|22027627 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 54.3 bits (129), Expect = 9e-08
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 35 FDCAVCLEVLHQPVRTRCGHVFCRSCIATSLK-NNKWTCPYCRAYLPSEGVPATDVAKR- 92
+ CA C VLH P +T CGH FC+ CI + + N CP + + S+ V + KR
Sbjct: 43 YKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKRE 102
Query: 93 MKSEYKNCAE---CDTLVCLSEMRAHIRTC---------QKYIDKYGPLQELEETAARC- 139
+ + Y C+ C+ V L + H++ C +K + E +A C
Sbjct: 103 VLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQ 162
Query: 140 ----VCPFCQRELYEDSLLDHCITHHRSERRPVFCP 171
C +C++++ +L +H + PVFCP
Sbjct: 163 FRKEKCLYCKKDVVVINLQNH--EENLCPEYPVFCP 196
>gi|77404348 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 54.3 bits (129), Expect = 9e-08
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 35 FDCAVCLEVLHQPVRTRCGHVFCRSCIATSLK-NNKWTCPYCRAYLPSEGVPATDVAKR- 92
+ CA C VLH P +T CGH FC+ CI + + N CP + + S+ V + KR
Sbjct: 43 YKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKRE 102
Query: 93 MKSEYKNCAE---CDTLVCLSEMRAHIRTC---------QKYIDKYGPLQELEETAARC- 139
+ + Y C+ C+ V L + H++ C +K + E +A C
Sbjct: 103 VLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQ 162
Query: 140 ----VCPFCQRELYEDSLLDHCITHHRSERRPVFCP 171
C +C++++ +L +H + PVFCP
Sbjct: 163 FRKEKCLYCKKDVVVINLQNH--EENLCPEYPVFCP 196
>gi|11321603 TNF receptor-associated factor 5 [Homo sapiens]
Length = 557
Score = 54.3 bits (129), Expect = 9e-08
Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 21/156 (13%)
Query: 35 FDCAVCLEVLHQPVRTRCGHVFCRSCIATSLK-NNKWTCPYCRAYLPSEGVPATDVAKR- 92
+ CA C VLH P +T CGH FC+ CI + + N CP + + S+ V + KR
Sbjct: 43 YKCAFCHSVLHNPHQTGCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKRE 102
Query: 93 MKSEYKNCAE---CDTLVCLSEMRAHIRTC---------QKYIDKYGPLQELEETAARC- 139
+ + Y C+ C+ V L + H++ C +K + E +A C
Sbjct: 103 VLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQ 162
Query: 140 ----VCPFCQRELYEDSLLDHCITHHRSERRPVFCP 171
C +C++++ +L +H + PVFCP
Sbjct: 163 FRKEKCLYCKKDVVVINLQNH--EENLCPEYPVFCP 196
>gi|22749269 ring finger protein 129 [Homo sapiens]
Length = 471
Score = 53.9 bits (128), Expect = 1e-07
Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 21/104 (20%)
Query: 37 CAVCLEVLHQPVRTRCGHVFCRSCIATSLK--NNKWTCPYCRAYLPSEGV-------PAT 87
C +CLE L PV CGH FCRSC++ S K ++ + CP CR P + T
Sbjct: 16 CPICLEYLKDPVTINCGHNFCRSCLSVSWKDLDDTFPCPVCRFCFPYKSFRRNPQLRNLT 75
Query: 88 DVAKRM------KSEYKNCAECD------TLVCLSEMRAHIRTC 119
++AK++ + K A C+ TL C+ ++ C
Sbjct: 76 EIAKQLQIRRSKRKRQKENAMCEKHNQFLTLFCVKDLEILCTQC 119
>gi|4557841 recombination activating gene 1 [Homo sapiens]
Length = 1043
Score = 52.8 bits (125), Expect = 3e-07
Identities = 33/93 (35%), Positives = 39/93 (41%), Gaps = 4/93 (4%)
Query: 28 PELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCR--AYLPSEGVP 85
PE V S C +C +L PV T C HVFCR CI LK CP CR + P
Sbjct: 284 PEHFVKSISCQICEHILADPVETNCKHVFCRVCILRCLKVMGSYCPSCRYPCFPTDLESP 343
Query: 86 ATDVAKRMKSEYKNC--AECDTLVCLSEMRAHI 116
+ S C EC+ V L + HI
Sbjct: 344 VKSFLSVLNSLMVKCPAKECNEEVSLEKYNHHI 376
>gi|148528975 LON peptidase N-terminal domain and ring finger 2
[Homo sapiens]
Length = 754
Score = 52.4 bits (124), Expect = 3e-07
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 12 SAPASATARALERRRDPE----------LPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCI 61
+AP + L +R P L VT F+CA+C+ +L +PV T CGH FC C+
Sbjct: 414 NAPGKIPKKDLSLQRSPNSETEESQGLSLDVTDFECALCMRLLFEPVTTPCGHTFCLKCL 473
Query: 62 ATSLKNNKWTCPYCR 76
L ++ CP C+
Sbjct: 474 ERCL-DHAPHCPLCK 487
Score = 33.1 bits (74), Expect = 0.21
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 27 DPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCI 61
+P P C C +LH+PV CG C+ C+
Sbjct: 133 EPRAPRDLLGCPRCRRLLHKPVTLPCGLTVCKRCV 167
>gi|22027616 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 52.0 bits (123), Expect = 4e-07
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 27/179 (15%)
Query: 5 LSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATS 64
L TD P + + + + + C C VL P +T CGH FC SC+A
Sbjct: 21 LHTDRSAGTPVFVPEQGGYKEKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAAL 80
Query: 65 LKNNKWTCPYCRAYLPSEGVPATDVAKR--------MKSEYKNCAECDTLVCLSEMRAHI 116
L ++ C C+ + + V + KR ++E + CAE + L + H+
Sbjct: 81 LSSSSPKCTACQESIVKDKVFKDNCCKREILALQIYCRNESRGCAE---QLMLGHLLVHL 137
Query: 117 RT-CQKYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCR 174
+ C +EL CV P C+ ++ L DH + R C C+
Sbjct: 138 KNDCH--------FEELP-----CVRPDCKEKVLRKDLRDH--VEKACKYREATCSHCK 181
>gi|22027620 TNF receptor-associated factor 3 isoform 2 [Homo
sapiens]
Length = 543
Score = 52.0 bits (123), Expect = 4e-07
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 27/179 (15%)
Query: 5 LSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATS 64
L TD P + + + + + C C VL P +T CGH FC SC+A
Sbjct: 21 LHTDRSAGTPVFVPEQGGYKEKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAAL 80
Query: 65 LKNNKWTCPYCRAYLPSEGVPATDVAKR--------MKSEYKNCAECDTLVCLSEMRAHI 116
L ++ C C+ + + V + KR ++E + CAE + L + H+
Sbjct: 81 LSSSSPKCTACQESIVKDKVFKDNCCKREILALQIYCRNESRGCAE---QLMLGHLLVHL 137
Query: 117 RT-CQKYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCR 174
+ C +EL CV P C+ ++ L DH + R C C+
Sbjct: 138 KNDCH--------FEELP-----CVRPDCKEKVLRKDLRDH--VEKACKYREATCSHCK 181
>gi|22027618 TNF receptor-associated factor 3 isoform 1 [Homo
sapiens]
Length = 568
Score = 52.0 bits (123), Expect = 4e-07
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 27/179 (15%)
Query: 5 LSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATS 64
L TD P + + + + + C C VL P +T CGH FC SC+A
Sbjct: 21 LHTDRSAGTPVFVPEQGGYKEKFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAAL 80
Query: 65 LKNNKWTCPYCRAYLPSEGVPATDVAKR--------MKSEYKNCAECDTLVCLSEMRAHI 116
L ++ C C+ + + V + KR ++E + CAE + L + H+
Sbjct: 81 LSSSSPKCTACQESIVKDKVFKDNCCKREILALQIYCRNESRGCAE---QLMLGHLLVHL 137
Query: 117 RT-CQKYIDKYGPLQELEETAARCVCPFCQRELYEDSLLDHCITHHRSERRPVFCPLCR 174
+ C +EL CV P C+ ++ L DH + R C C+
Sbjct: 138 KNDCH--------FEELP-----CVRPDCKEKVLRKDLRDH--VEKACKYREATCSHCK 181
>gi|87241872 ring finger protein 151 [Homo sapiens]
Length = 245
Score = 52.0 bits (123), Expect = 4e-07
Identities = 31/94 (32%), Positives = 47/94 (50%), Gaps = 6/94 (6%)
Query: 31 PVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATDVA 90
P ++F C+VC VL +P R C H+FC+ CI L K TCP CR + + V +
Sbjct: 14 PDSNFVCSVCHGVLKRPARLPCSHIFCKKCILRWLARQK-TCPCCRKEVKRKKVVHMNKL 72
Query: 91 K----RMKSEYKNC-AECDTLVCLSEMRAHIRTC 119
+ R++ + KN A C L+ + H +C
Sbjct: 73 RKTIGRLEVKCKNADAGCIVTCPLAHRKGHQDSC 106
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 51.6 bits (122), Expect = 6e-07
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 13 APASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKN--NKW 70
A A++TA ALE + C+VCLE L +PV CGH FC++CI ++ +
Sbjct: 11 ASAASTAAALENLQ------VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDF 64
Query: 71 TCPYC------RAYLPSEGVPA-TDVAKRMKSEYKN-----------------CAECDTL 106
CP C R+ P+ + + ++AK++++ + C E
Sbjct: 65 PCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEA 124
Query: 107 VCLSEMRAHIRTCQKYIDKYGPLQELEETAARCVCPFCQR 146
VCL +H + QE +E +C+ P Q+
Sbjct: 125 VCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQK 164
>gi|25777696 tripartite motif-containing 39 isoform 1 [Homo sapiens]
Length = 518
Score = 51.6 bits (122), Expect = 6e-07
Identities = 41/160 (25%), Positives = 68/160 (42%), Gaps = 32/160 (20%)
Query: 13 APASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKN--NKW 70
A A++TA ALE + C+VCLE L +PV CGH FC++CI ++ +
Sbjct: 11 ASAASTAAALENLQ------VEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDF 64
Query: 71 TCPYC------RAYLPSEGVPA-TDVAKRMKSEYKN-----------------CAECDTL 106
CP C R+ P+ + + ++AK++++ + C E
Sbjct: 65 PCPVCRKTSRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEALSLFCYEDQEA 124
Query: 107 VCLSEMRAHIRTCQKYIDKYGPLQELEETAARCVCPFCQR 146
VCL +H + QE +E +C+ P Q+
Sbjct: 125 VCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQK 164
>gi|7706091 bifunctional apoptosis regulator [Homo sapiens]
Length = 450
Score = 51.6 bits (122), Expect = 6e-07
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 28 PELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWT-CPYCRAYLPSEGVPA 86
P++ V+ F C C ++L P CGH FCR C+A ++K T CP CR EG P
Sbjct: 25 PQISVSEFSCHCCYDILVNPTTLNCGHSFCRHCLALWWASSKKTECPECRE--KWEGFPK 82
Query: 87 TDVAKR 92
+ R
Sbjct: 83 VSILLR 88
>gi|73747840 LON peptidase N-terminal domain and ring finger 3
isoform 1 [Homo sapiens]
Length = 759
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 30 LPVTSFD-----CAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCR 76
LP+ SFD CA+C+ + ++PV T CGH FC C+ L +N CP C+
Sbjct: 455 LPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNA-KCPLCK 505
Score = 35.8 bits (81), Expect = 0.032
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 2 GSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCI 61
G+V + ++G +A A+AT F C C L PV CGH FC+ C+
Sbjct: 134 GTVAAEETGAAAAAAATE-----------VWDGFKCRKCHGFLSDPVSLSCGHTFCKLCL 182
>gi|37622896 LON peptidase N-terminal domain and ring finger 3
isoform 2 [Homo sapiens]
Length = 718
Score = 51.2 bits (121), Expect = 7e-07
Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
Query: 30 LPVTSFD-----CAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCR 76
LP+ SFD CA+C+ + ++PV T CGH FC C+ L +N CP C+
Sbjct: 414 LPLASFDASDLECALCMRLFYEPVTTPCGHTFCLKCLERCLDHNA-KCPLCK 464
Score = 35.8 bits (81), Expect = 0.032
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 11/60 (18%)
Query: 2 GSVLSTDSGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCI 61
G+V + ++G +A A+AT F C C L PV CGH FC+ C+
Sbjct: 134 GTVAAEETGAAAAAAATE-----------VWDGFKCRKCHGFLSDPVSLSCGHTFCKLCL 182
>gi|60099474 tripartite motif-containing 61 [Homo sapiens]
Length = 209
Score = 50.4 bits (119), Expect = 1e-06
Identities = 36/130 (27%), Positives = 55/130 (42%), Gaps = 11/130 (8%)
Query: 37 CAVCLEVLHQPVRTRCGHVFCRSCIATSLK--NNKWTCPYCRAYLPSEGV-------PAT 87
C +CL+ L PV CGH FC SCI S K ++ + CP+C P T
Sbjct: 16 CPICLDYLKDPVTISCGHNFCLSCIIMSWKDLHDSFPCPFCHFCCPERKFISNPQLGSLT 75
Query: 88 DVAKRMK-SEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELE-ETAARCVCPFCQ 145
++AK+++ K + + VC + CQK ++ P L + CV P +
Sbjct: 76 EIAKQLQIRSKKRKRQEEKHVCKKHNQVLTFFCQKDLELLCPRCSLSTDHQHHCVWPIKK 135
Query: 146 RELYEDSLLD 155
Y L+
Sbjct: 136 AASYHRKKLE 145
>gi|23312364 ubiquitin-like with PHD and ring finger domains 2 [Homo
sapiens]
Length = 802
Score = 49.3 bits (116), Expect = 3e-06
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 34 SFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCR 76
SF C C E+++QPV T C H C+ C+ S K ++CP CR
Sbjct: 730 SFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACR 772
>gi|21071052 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 49.3 bits (116), Expect = 3e-06
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 9 SGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNN 68
SG P + + + + + +CA+CL+ L PV T C HVFC+ CI ++N
Sbjct: 732 SGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNE 791
Query: 69 K--WTCPYCRAYLPSEGV-------PATDVAKRMKSEYKNCAECDTLV-CLSEMR 113
+ CP CR + + + A D K+ E+ + ++ + L+ L+++R
Sbjct: 792 QPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLR 846
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 91 KRMKSEYKNCAECDTLVCLSEMRAHIRT-CQKYIDKYGPLQELEETAARCVCPFCQRELY 149
++MK + ++ + +CL + + T C K Q ++ CP C+ +++
Sbjct: 746 RKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIH 805
Query: 150 EDSLLD 155
ED+LL+
Sbjct: 806 EDNLLE 811
>gi|21071054 helicase-like transcription factor [Homo sapiens]
Length = 1009
Score = 49.3 bits (116), Expect = 3e-06
Identities = 30/115 (26%), Positives = 55/115 (47%), Gaps = 10/115 (8%)
Query: 9 SGKSAPASATARALERRRDPELPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNN 68
SG P + + + + + +CA+CL+ L PV T C HVFC+ CI ++N
Sbjct: 732 SGNDTPEELRKKLIRKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNE 791
Query: 69 K--WTCPYCRAYLPSEGV-------PATDVAKRMKSEYKNCAECDTLV-CLSEMR 113
+ CP CR + + + A D K+ E+ + ++ + L+ L+++R
Sbjct: 792 QPHAKCPLCRNDIHEDNLLECPPEELARDSEKKSDMEWTSSSKINALMHALTDLR 846
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 91 KRMKSEYKNCAECDTLVCLSEMRAHIRT-CQKYIDKYGPLQELEETAARCVCPFCQRELY 149
++MK + ++ + +CL + + T C K Q ++ CP C+ +++
Sbjct: 746 RKMKLILSSGSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIH 805
Query: 150 EDSLLD 155
ED+LL+
Sbjct: 806 EDNLLE 811
>gi|87080813 LON peptidase N-terminal domain and ring finger 1 [Homo
sapiens]
Length = 773
Score = 49.3 bits (116), Expect = 3e-06
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 30 LPVTSFDCAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYL 79
+ V+ F+C++C+ + +PV T CGH FC++C+ L + + CP C+ L
Sbjct: 472 IDVSDFECSLCMRLFFEPVTTPCGHSFCKNCLERCLDHAPY-CPLCKESL 520
Score = 41.2 bits (95), Expect = 8e-04
Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 37 CAVCLEVLHQPVRTRCGHVFCRSCIATSLKNNKWTCPYCRAYLPSEGVPATD 88
C C L +PV CGH +CR C+ L+ C CR LP ATD
Sbjct: 123 CLGCRGFLSEPVTVPCGHSYCRRCLRRELRAR---CRLCRDRLPPATASATD 171
>gi|68160937 tripartite motif-containing 25 [Homo sapiens]
Length = 630
Score = 48.1 bits (113), Expect = 6e-06
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 37 CAVCLEVLHQPVRTRCGHVFCRSCI--ATSLKNNKWTCPYCRA 77
C++CLE +PV T CGH FC SC+ +++ + + CP CRA
Sbjct: 13 CSICLEPFKEPVTTPCGHNFCGSCLNETWAVQGSPYLCPQCRA 55
>gi|14719418 tripartite motif protein TRIM5 isoform alpha [Homo
sapiens]
Length = 493
Score = 47.8 bits (112), Expect = 8e-06
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 37 CAVCLEVLHQPVRTRCGHVFCRSCIATS-----LKNNKWTCPYCR-AYLPSEGVPATDVA 90
C +CLE+L QP+ CGH FC++C+ + L + +CP CR +Y P P VA
Sbjct: 15 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 74
Query: 91 KRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARCVCPFCQR 146
N E V LS + C ++ +K L + + +C C+R
Sbjct: 75 --------NLVEKLREVKLSPEGQKVDHCARHGEK---LLLFCQEDGKVICWLCER 119
>gi|15011946 tripartite motif protein TRIM5 isoform delta [Homo
sapiens]
Length = 326
Score = 47.8 bits (112), Expect = 8e-06
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 17/116 (14%)
Query: 37 CAVCLEVLHQPVRTRCGHVFCRSCIATS-----LKNNKWTCPYCR-AYLPSEGVPATDVA 90
C +CLE+L QP+ CGH FC++C+ + L + +CP CR +Y P P VA
Sbjct: 15 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVA 74
Query: 91 KRMKSEYKNCAECDTLVCLSEMRAHIRTCQKYIDKYGPLQELEETAARCVCPFCQR 146
N E V LS + C ++ +K L + + +C C+R
Sbjct: 75 --------NIVEKLREVKLSPEGQKVDHCARHGEK---LLLFCQEDGKVICWLCER 119
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,798,250
Number of Sequences: 37866
Number of extensions: 466603
Number of successful extensions: 2029
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 147
Number of HSP's that attempted gapping in prelim test: 1692
Number of HSP's gapped (non-prelim): 456
length of query: 232
length of database: 18,247,518
effective HSP length: 99
effective length of query: 133
effective length of database: 14,498,784
effective search space: 1928338272
effective search space used: 1928338272
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.