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Search of human proteins with 34878844
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|34878844 tripartite motif-containing 55 isoform 3 [Homo
sapiens]
(452 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens] 919 0.0
gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens] 842 0.0
gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens] 842 0.0
gi|78482626 ring finger protein 30 isoform 2 [Homo sapiens] 456 e-128
gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens] 435 e-122
gi|19924163 muscle specific ring finger protein 1 [Homo sapiens] 429 e-120
gi|34878852 tripartite motif-containing 55 isoform 4 [Homo sapiens] 419 e-117
gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens] 154 1e-37
gi|47174859 tripartite motif-containing 46 [Homo sapiens] 143 3e-34
gi|148833499 midline 1 [Homo sapiens] 134 2e-31
gi|4557753 midline 1 [Homo sapiens] 134 2e-31
gi|15451852 midline 1 [Homo sapiens] 134 2e-31
gi|223890259 midline 2 isoform 2 [Homo sapiens] 133 4e-31
gi|223890257 midline 2 isoform 1 [Homo sapiens] 133 4e-31
gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens] 93 6e-19
gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens] 93 6e-19
gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens] 93 6e-19
gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens] 93 6e-19
gi|27436877 tripartite motif-containing 59 [Homo sapiens] 92 1e-18
gi|62865604 tripartite motif protein 31 [Homo sapiens] 89 1e-17
gi|32454739 tripartite motif-containing 3 [Homo sapiens] 88 2e-17
gi|32454737 tripartite motif-containing 3 [Homo sapiens] 88 2e-17
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 80 4e-15
gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens] 80 5e-15
gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens] 80 5e-15
gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo sa... 78 1e-14
gi|89886468 fibronectin type III and SPRY domain containing 1-li... 78 1e-14
gi|134288906 tripartite motif-containing 67 [Homo sapiens] 78 2e-14
gi|217035095 tripartite motif-containing 62 [Homo sapiens] 77 2e-14
gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens] 77 4e-14
>gi|34878844 tripartite motif-containing 55 isoform 3 [Homo sapiens]
Length = 452
Score = 919 bits (2375), Expect = 0.0
Identities = 452/452 (100%), Positives = 452/452 (100%)
Query: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
Query: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV
Sbjct: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
Query: 181 GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK 240
GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK
Sbjct: 181 GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK 240
Query: 241 LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI 300
LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI
Sbjct: 241 LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI 300
Query: 301 EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE 360
EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE
Sbjct: 301 EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE 360
Query: 361 NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQIGFEAPPL 420
NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQIGFEAPPL
Sbjct: 361 NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQIGFEAPPL 420
Query: 421 QGQAAAPASGSGADSEPARHIFSFSWLNSLNE 452
QGQAAAPASGSGADSEPARHIFSFSWLNSLNE
Sbjct: 421 QGQAAAPASGSGADSEPARHIFSFSWLNSLNE 452
>gi|34878836 tripartite motif-containing 55 isoform 1 [Homo sapiens]
Length = 548
Score = 842 bits (2176), Expect = 0.0
Identities = 421/446 (94%), Positives = 424/446 (95%), Gaps = 1/446 (0%)
Query: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
Query: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV
Sbjct: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
Query: 181 GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK 240
GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK
Sbjct: 181 GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK 240
Query: 241 LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI 300
LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI
Sbjct: 241 LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI 300
Query: 301 EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE 360
EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE
Sbjct: 301 EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE 360
Query: 361 NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQIGFEAPPL 420
NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQ G P
Sbjct: 361 NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQ-GEVVPTG 419
Query: 421 QGQAAAPASGSGADSEPARHIFSFSW 446
Q + A +E A +F SW
Sbjct: 420 SEQTTESETPVPAAAETADPLFYPSW 445
Score = 93.6 bits (231), Expect = 3e-19
Identities = 56/87 (64%), Positives = 59/87 (67%), Gaps = 11/87 (12%)
Query: 367 PG-EDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQIGFEAPPLQGQAA 425
PG ED N KA +V AA VS E +A A +QIGFEAPPLQGQAA
Sbjct: 472 PGSEDSNVRKA----EVAAAAASERAAVSGKET------SAPAATSQIGFEAPPLQGQAA 521
Query: 426 APASGSGADSEPARHIFSFSWLNSLNE 452
APASGSGADSEPARHIFSFSWLNSLNE
Sbjct: 522 APASGSGADSEPARHIFSFSWLNSLNE 548
>gi|34878821 tripartite motif-containing 55 isoform 2 [Homo sapiens]
Length = 540
Score = 842 bits (2176), Expect = 0.0
Identities = 421/446 (94%), Positives = 424/446 (95%), Gaps = 1/446 (0%)
Query: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
Query: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV
Sbjct: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
Query: 181 GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK 240
GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK
Sbjct: 181 GSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEK 240
Query: 241 LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI 300
LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI
Sbjct: 241 LEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKI 300
Query: 301 EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE 360
EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE
Sbjct: 301 EHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGEAVEVEEVE 360
Query: 361 NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQIGFEAPPL 420
NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQ G P
Sbjct: 361 NVQTEFPGEDENPEKASELSQVELQAAPGALPVSSPEPPPALPPAADAPVTQ-GEVVPTG 419
Query: 421 QGQAAAPASGSGADSEPARHIFSFSW 446
Q + A +E A +F SW
Sbjct: 420 SEQTTESETPVPAAAETADPLFYPSW 445
>gi|78482626 ring finger protein 30 isoform 2 [Homo sapiens]
Length = 358
Score = 456 bits (1172), Expect = e-128
Identities = 225/354 (63%), Positives = 273/354 (77%), Gaps = 5/354 (1%)
Query: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
M+ ++ +K + +MDNLEKQLICPICLEMF+KPVVILPCQHNLCRKCA+D+FQASNP
Sbjct: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
Query: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRP--EKK 118
+RG TT++SGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES+RP K
Sbjct: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
Query: 119 SDQPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAI 178
MCEEHEEE+INIYCL+CEVPTCSLCKVFGAHKDC+VAPL +++RQKSELSDGIA+
Sbjct: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGIAM 180
Query: 179 LVGSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQE 238
LV NDRVQ VI+Q+E+ C+TIE+ R+QKQ L ++F+ L +LEERK E+ Q + R QE
Sbjct: 181 LVAGNDRVQAVITQMEEVCQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQE 240
Query: 239 EKLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQME 298
EKL+ VR LI++Y DHLE SKLVES IQ M+EP+MA++LQ AK L+ K+ SK
Sbjct: 241 EKLQRVRGLIRQYGDHLEASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAG 300
Query: 299 KIEHGYENMNHFTVNLNREEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGE 352
+ E GYE+M FTV + +++R IDF EEEE +GE EG G E
Sbjct: 301 RPEPGYESMEQFTVRVEHVAEMLRTIDFQPGASGEEEEVAPDGE---EGSAGPE 351
>gi|78482627 ring finger protein 30 isoform 1 [Homo sapiens]
Length = 400
Score = 435 bits (1119), Expect = e-122
Identities = 225/396 (56%), Positives = 273/396 (68%), Gaps = 47/396 (11%)
Query: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
M+ ++ +K + +MDNLEKQLICPICLEMF+KPVVILPCQHNLCRKCA+D+FQASNP
Sbjct: 1 MNFTVGFKPLLGDAHSMDNLEKQLICPICLEMFSKPVVILPCQHNLCRKCANDVFQASNP 60
Query: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRP--EKK 118
+RG TT++SGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES+RP K
Sbjct: 61 LWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKA 120
Query: 119 SDQPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQK--------- 169
MCEEHEEE+INIYCL+CEVPTCSLCKVFGAHKDC+VAPL +++RQK
Sbjct: 121 EQHLMCEEHEEEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKKQDLTLLPR 180
Query: 170 ---------------------------------SELSDGIAILVGSNDRVQGVISQLEDT 196
SELSDGIA+LV NDRVQ VI+Q+E+
Sbjct: 181 LECSGTNTTYCSLDLPSSSDPPILASQNTKIIDSELSDGIAMLVAGNDRVQAVITQMEEV 240
Query: 197 CKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLE 256
C+TIE+ R+QKQ L ++F+ L +LEERK E+ Q + R QEEKL+ VR LI++Y DHLE
Sbjct: 241 CQTIEDNSRRQKQLLNQRFESLCAVLEERKGELLQALAREQEEKLQRVRGLIRQYGDHLE 300
Query: 257 NVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEHGYENMNHFTVNLNR 316
SKLVES IQ M+EP+MA++LQ AK L+ K+ SK + E GYE+M FTV +
Sbjct: 301 ASSKLVESAIQSMEEPQMALYLQQAKELINKVGAMSKVELAGRPEPGYESMEQFTVRVEH 360
Query: 317 EEKIIREIDFYREDEDEEEEEGGEGEKEGEGEVGGE 352
+++R IDF EEEE +GE EG G E
Sbjct: 361 VAEMLRTIDFQPGASGEEEEVAPDGE---EGSAGPE 393
>gi|19924163 muscle specific ring finger protein 1 [Homo sapiens]
Length = 353
Score = 429 bits (1103), Expect = e-120
Identities = 212/351 (60%), Positives = 270/351 (76%), Gaps = 10/351 (2%)
Query: 5 LNYKS-FSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLP 63
++YKS ++ M+NLEKQLICPICLEMFTKPVVILPCQHNLCRKCA+DIFQA+NPY
Sbjct: 1 MDYKSSLIQDGNPMENLEKQLICPICLEMFTKPVVILPCQHNLCRKCANDIFQAANPYWT 60
Query: 64 TRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQE-STRPEKKSDQP 122
+RG + SGGRFRCP+CRHEV++DRHGVYGLQRNLLVENIIDIYKQE S+RP +K P
Sbjct: 61 SRGSSVSMSGGRFRCPTCRHEVIMDRHGVYGLQRNLLVENIIDIYKQECSSRPLQKGSHP 120
Query: 123 MCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGS 182
MC+EHE+E+INIYCL CEVPTCS+CKVFG HK C+VAPL VFQ QK+EL++ I++LV
Sbjct: 121 MCKEHEDEKINIYCLTCEVPTCSMCKVFGIHKACEVAPLQSVFQGQKTELNNCISMLVAG 180
Query: 183 NDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLE 242
NDRVQ +I+QLED+ + +E + K+EL +KFD LY IL+E+K+E+ Q IT+ QE+KL
Sbjct: 181 NDRVQTIITQLEDSRRVTKENSHQVKEELSQKFDTLYAILDEKKSELLQRITQEQEKKLS 240
Query: 243 HVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEH 302
+ ALI++Y + L+ +KLVE+ IQ +DEP A FL AK L+K I EASK Q+ K E
Sbjct: 241 FIEALIQQYQEQLDKSTKLVETAIQSLDEPGGATFLLTAKQLIKSIVEASKGCQLGKTEQ 300
Query: 303 GYENMNHFTVNLNREEKIIREIDF--------YREDEDEEEEEGGEGEKEG 345
G+ENM+ FT++L +R IDF + E+ED+EEEE EG++EG
Sbjct: 301 GFENMDFFTLDLEHIADALRAIDFGTDEEEEEFIEEEDQEEEESTEGKEEG 351
>gi|34878852 tripartite motif-containing 55 isoform 4 [Homo sapiens]
Length = 241
Score = 419 bits (1078), Expect = e-117
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP
Sbjct: 1 MSASLNYKSFSKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNP 60
Query: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD
Sbjct: 61 YLPTRGGTTMASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD 120
Query: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV
Sbjct: 121 QPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILV 180
Query: 181 GSNDRVQGVISQLEDTCKTIE 201
GSNDRVQGVISQLEDTCKTIE
Sbjct: 181 GSNDRVQGVISQLEDTCKTIE 201
Score = 85.9 bits (211), Expect = 7e-17
Identities = 40/41 (97%), Positives = 41/41 (100%)
Query: 412 QIGFEAPPLQGQAAAPASGSGADSEPARHIFSFSWLNSLNE 452
+IGFEAPPLQGQAAAPASGSGADSEPARHIFSFSWLNSLNE
Sbjct: 201 EIGFEAPPLQGQAAAPASGSGADSEPARHIFSFSWLNSLNE 241
>gi|62865606 tripartite motif-containing 36 isoform 1 [Homo sapiens]
Length = 728
Score = 154 bits (390), Expect = 1e-37
Identities = 112/410 (27%), Positives = 187/410 (45%), Gaps = 91/410 (22%)
Query: 11 SKEQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCA---------------SDIF 55
+K + T+ N+E++LICP C E+FT P+ ILPCQH++C KC SD
Sbjct: 18 AKGKVTIKNIERELICPACKELFTHPL-ILPCQHSICHKCVKELLLTLDDSFNDVGSDNS 76
Query: 56 QASNPYL--PTRGGTTMASGGR--------------FRCPSCRHEVVLDRHGVYGLQRNL 99
S+P L P+ + R F CP C H+V L G+ GL RN
Sbjct: 77 NQSSPRLRLPSPSMDKIDRINRPGWKRNSLTPRTTVFPCPGCEHDVDLGERGINGLFRNF 136
Query: 100 LVENIIDIYKQESTR-----------PEKKSDQP-------------------------- 122
+E I++ Y+Q + P ++S +
Sbjct: 137 TLETIVERYRQAARAATAIMCDLCKPPPQESTKSCMDCSASYCNECFKIHHPWGTIKAQH 196
Query: 123 --------------MCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQ 168
MC EHE ERIN+YC C P C LCK+ G H + +V ++ ++
Sbjct: 197 EYVGPTTNFRPKILMCPEHETERINMYCELCRRPVCHLCKLGGNHANHRVTTMSSAYKTL 256
Query: 169 KSELSDGIAILVGSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNE 228
K +LS I L+G +V+ IS+L K E + K+E F+ L+ +LEERK+
Sbjct: 257 KEKLSKDIDYLIGKESQVKSQISELNLLMKETECNGERAKEEAITHFEKLFEVLEERKSS 316
Query: 229 MTQVITRTQEEKLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTL---L 285
+ + I +++ +L+ + +++Y LEN + LV + + E + + F+Q AK L +
Sbjct: 317 VLKAIDSSKKLRLDKFQTQMEEYQGLLEN-NGLVGYAQEVLKETDQSCFVQTAKQLHLRI 375
Query: 286 KKISEASKAFQMEKIEHGYENMNHFTVNLNREEKIIREIDFYREDEDEEE 335
+K +E+ K+F+ + + VN +++ +++ E+ F+ D E
Sbjct: 376 QKATESLKSFR----PAAQTSFEDYVVNTSKQTELLGELSFFSSGIDVPE 421
>gi|47174859 tripartite motif-containing 46 [Homo sapiens]
Length = 759
Score = 143 bits (361), Expect = 3e-34
Identities = 108/413 (26%), Positives = 185/413 (44%), Gaps = 101/413 (24%)
Query: 16 TMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIF------------------QA 57
+M N+EK+L+CP+C EM+ +P+V LPC HN+C+ CA ++ A
Sbjct: 23 SMKNMEKELLCPVCQEMYKQPLV-LPCTHNVCQACAREVLGQQGYIGHGGDPSSEPTSPA 81
Query: 58 SNPYL------------PTRGGTTMASG-----GR-----------FRCPSCRHEVVLDR 89
S P P R + SG GR F CP+C+ +V L
Sbjct: 82 STPSTRSPRLSRRTLPKPDRLDRLLKSGFGTYPGRKRGALHPQVIMFPCPACQGDVELGE 141
Query: 90 HGVYGLQRNLLVENIIDIYKQ------------------ESTR----------------- 114
G+ GL RNL +E +++ Y+Q E+T+
Sbjct: 142 RGLAGLFRNLTLERVVERYRQSVSVGGAILCQLCKPPPLEATKGCTECRATFCNECFKLF 201
Query: 115 ----PEKKSDQP------------MCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQV 158
+K +P MC +H+EE + YC C+ C LC+V H ++
Sbjct: 202 HPWGTQKAQHEPTLPTLSFRPKGLMCPDHKEE-VTHYCKTCQRLVCQLCRVRRTHSGHKI 260
Query: 159 APLTHVFQRQKSELSDGIAILVGSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYL 218
P+ +Q K +L+ + ++G+ D VQ I +LE+ + E ++ K+E+ + L
Sbjct: 261 TPVLSAYQALKDKLTKSLTYILGNQDTVQTQICELEEAVRHTEVSGQQAKEEVSQLVRGL 320
Query: 219 YGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFL 278
+LEE++ + Q I Q+E+L + A I+++ L+ S LV + + E + F+
Sbjct: 321 GAVLEEKRASLLQAIEECQQERLARLSAQIQEHRSLLDG-SGLVGYAQEVLKETDQPCFV 379
Query: 279 QNAKTLLKKISEASKAFQMEKIEHGYENMNHFTVNLNREEKIIREIDFYREDE 331
Q AK L +I+ A++A Q + + H +++ RE K++ E++F R E
Sbjct: 380 QAAKQLHNRIARATEALQTFR-PAASSSFRHCQLDVGREMKLLTELNFLRVPE 431
>gi|148833499 midline 1 [Homo sapiens]
Length = 667
Score = 134 bits (337), Expect = 2e-31
Identities = 99/388 (25%), Positives = 180/388 (46%), Gaps = 88/388 (22%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA I + ++ S F
Sbjct: 1 METLESELTCPICLELFEDPL-LLPCAHSLCFNCAHRILVSH-----CATNESVESITAF 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES---------TRPEKKSDQ------ 121
+CP+CRH + L + G+ GL+RN+ ++NIID +++ S TR E+ D
Sbjct: 55 QCPTCRHVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSA 114
Query: 122 -----PMCEEHEEERINIYCLNCEVPTC-------------------------------- 144
C++ + C+ CEV C
Sbjct: 115 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLM 174
Query: 145 ---------------------SLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSN 183
+LCK+ G H+D QVA L+ + + K L + L+ N
Sbjct: 175 CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRN 234
Query: 184 DRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVI-TRTQEEKLE 242
++ ++++L TC+ +E +Q+ +L E+ D L I+++R+ Q+I T+ +E K+
Sbjct: 235 TELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRR----QIIGTKIKEGKVM 290
Query: 243 HVRALIKKYSD---HLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEK 299
+R L ++ ++ +E + L+ + E + A FLQ AK + +++S A+ + Q+
Sbjct: 291 RLRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLI 350
Query: 300 IEHGY-ENMNHFTVNLNREEKIIREIDF 326
E + + F ++ +RE+K++ +D+
Sbjct: 351 PEINLNDTFDTFALDFSREKKLLECLDY 378
>gi|4557753 midline 1 [Homo sapiens]
Length = 667
Score = 134 bits (337), Expect = 2e-31
Identities = 99/388 (25%), Positives = 180/388 (46%), Gaps = 88/388 (22%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA I + ++ S F
Sbjct: 1 METLESELTCPICLELFEDPL-LLPCAHSLCFNCAHRILVSH-----CATNESVESITAF 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES---------TRPEKKSDQ------ 121
+CP+CRH + L + G+ GL+RN+ ++NIID +++ S TR E+ D
Sbjct: 55 QCPTCRHVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSA 114
Query: 122 -----PMCEEHEEERINIYCLNCEVPTC-------------------------------- 144
C++ + C+ CEV C
Sbjct: 115 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLM 174
Query: 145 ---------------------SLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSN 183
+LCK+ G H+D QVA L+ + + K L + L+ N
Sbjct: 175 CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRN 234
Query: 184 DRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVI-TRTQEEKLE 242
++ ++++L TC+ +E +Q+ +L E+ D L I+++R+ Q+I T+ +E K+
Sbjct: 235 TELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRR----QIIGTKIKEGKVM 290
Query: 243 HVRALIKKYSD---HLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEK 299
+R L ++ ++ +E + L+ + E + A FLQ AK + +++S A+ + Q+
Sbjct: 291 RLRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLI 350
Query: 300 IEHGY-ENMNHFTVNLNREEKIIREIDF 326
E + + F ++ +RE+K++ +D+
Sbjct: 351 PEINLNDTFDTFALDFSREKKLLECLDY 378
>gi|15451852 midline 1 [Homo sapiens]
Length = 667
Score = 134 bits (337), Expect = 2e-31
Identities = 99/388 (25%), Positives = 180/388 (46%), Gaps = 88/388 (22%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA I + ++ S F
Sbjct: 1 METLESELTCPICLELFEDPL-LLPCAHSLCFNCAHRILVSH-----CATNESVESITAF 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES---------TRPEKKSDQ------ 121
+CP+CRH + L + G+ GL+RN+ ++NIID +++ S TR E+ D
Sbjct: 55 QCPTCRHVITLSQRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSETRRERAFDANTMTSA 114
Query: 122 -----PMCEEHEEERINIYCLNCEVPTC-------------------------------- 144
C++ + C+ CEV C
Sbjct: 115 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLM 174
Query: 145 ---------------------SLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSN 183
+LCK+ G H+D QVA L+ + + K L + L+ N
Sbjct: 175 CLEHEDEKVNMYCVTDDQLICALCKLVGRHRDHQVAALSERYDKLKQNLESNLTNLIKRN 234
Query: 184 DRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVI-TRTQEEKLE 242
++ ++++L TC+ +E +Q+ +L E+ D L I+++R+ Q+I T+ +E K+
Sbjct: 235 TELETLLAKLIQTCQHVEVNASRQEAKLTEECDLLIEIIQQRR----QIIGTKIKEGKVM 290
Query: 243 HVRALIKKYSD---HLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEK 299
+R L ++ ++ +E + L+ + E + A FLQ AK + +++S A+ + Q+
Sbjct: 291 RLRKLAQQIANCKQCIERSASLISQAEHSLKENDHARFLQTAKNITERVSMATASSQVLI 350
Query: 300 IEHGY-ENMNHFTVNLNREEKIIREIDF 326
E + + F ++ +RE+K++ +D+
Sbjct: 351 PEINLNDTFDTFALDFSREKKLLECLDY 378
>gi|223890259 midline 2 isoform 2 [Homo sapiens]
Length = 705
Score = 133 bits (334), Expect = 4e-31
Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 80/384 (20%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA I +S G ++ F
Sbjct: 21 METLESELTCPICLELFEDPL-LLPCAHSLCFSCAHRILVSS-----CSSGESIEPITAF 74
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES-TRPEKKSDQ-------------- 121
+CP+CR+ + L+ G+ GL+RN+ ++NIID +++ S + P S+
Sbjct: 75 QCPTCRYVISLNHRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPTTAMSS 134
Query: 122 -----PMCEEHEEERINIYCLNCEVPTC-------------------------------- 144
CE+ C+ CEV C
Sbjct: 135 ERIACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVPDTHLRGIT 194
Query: 145 ---------------------SLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSN 183
+LCK+ G H+D QVA L F++ K L + LV N
Sbjct: 195 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRN 254
Query: 184 DRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEH 243
++ +++L C+ +E + +L E+ D L I+++RK + I T+ KL
Sbjct: 255 SELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVMKLRK 314
Query: 244 VRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEHG 303
+ + LE + L+ + E + A FLQ+AK + ++++ A+ + Q+ +
Sbjct: 315 LAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQVLIPDIN 374
Query: 304 YEN-MNHFTVNLNREEKIIREIDF 326
+ + +F ++ +RE+K++ +D+
Sbjct: 375 FNDAFENFALDFSREKKLLEGLDY 398
>gi|223890257 midline 2 isoform 1 [Homo sapiens]
Length = 735
Score = 133 bits (334), Expect = 4e-31
Identities = 95/384 (24%), Positives = 169/384 (44%), Gaps = 80/384 (20%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE +L CPICLE+F P+ +LPC H+LC CA I +S G ++ F
Sbjct: 21 METLESELTCPICLELFEDPL-LLPCAHSLCFSCAHRILVSS-----CSSGESIEPITAF 74
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQES-TRPEKKSDQ-------------- 121
+CP+CR+ + L+ G+ GL+RN+ ++NIID +++ S + P S+
Sbjct: 75 QCPTCRYVISLNHRGLDGLKRNVTLQNIIDRFQKASVSGPNSPSESRRERTYRPTTAMSS 134
Query: 122 -----PMCEEHEEERINIYCLNCEVPTC-------------------------------- 144
CE+ C+ CEV C
Sbjct: 135 ERIACQFCEQDPPRDAVKTCITCEVSYCDRCLRATHPNKKPFTSHRLVEPVPDTHLRGIT 194
Query: 145 ---------------------SLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSN 183
+LCK+ G H+D QVA L F++ K L + LV N
Sbjct: 195 CLDHENEKVNMYCVSDDQLICALCKLVGRHRDHQVASLNDRFEKLKQTLEMNLTNLVKRN 254
Query: 184 DRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEH 243
++ +++L C+ +E + +L E+ D L I+++RK + I T+ KL
Sbjct: 255 SELENQMAKLIQICQQVEVNTAMHEAKLMEECDELVEIIQQRKQMIAVKIKETKVMKLRK 314
Query: 244 VRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEHG 303
+ + LE + L+ + E + A FLQ+AK + ++++ A+ + Q+ +
Sbjct: 315 LAQQVANCRQCLERSTVLINQAEHILKENDQARFLQSAKNIAERVAMATASSQVLIPDIN 374
Query: 304 YEN-MNHFTVNLNREEKIIREIDF 326
+ + +F ++ +RE+K++ +D+
Sbjct: 375 FNDAFENFALDFSREKKLLEGLDY 398
>gi|55953112 ret finger protein 2 isoform 2 [Homo sapiens]
Length = 410
Score = 92.8 bits (229), Expect = 6e-19
Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 25/278 (8%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE+ L CPIC +F P V LPC HN C+KC I + S ++ F
Sbjct: 4 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGS-------VRNSLWRPAPF 55
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYC 136
+CP+CR E G+ LQ N ++ I++ Y + P+ P+C+ H + +NI+C
Sbjct: 56 KCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISPK----MPVCKGHLGQPLNIFC 109
Query: 137 LNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSND--RVQGVISQLE 194
L C +C G H + + +++ D L S + R +S+L
Sbjct: 110 LTDMQLICGICATRGEHTKHVFCSIEDAYAQER----DAFESLFQSFETWRRGDALSRL- 164
Query: 195 DTCKTIE----ECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKK 250
DT +T + + K ++ E F+ L L+++KNE+ + ++ I K
Sbjct: 165 DTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINK 224
Query: 251 YSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKI 288
+ L+ F D E VFLQ + +KI
Sbjct: 225 LNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKI 262
>gi|47132524 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 92.8 bits (229), Expect = 6e-19
Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 25/278 (8%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE+ L CPIC +F P V LPC HN C+KC I + S ++ F
Sbjct: 1 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGS-------VRNSLWRPAPF 52
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYC 136
+CP+CR E G+ LQ N ++ I++ Y + P+ P+C+ H + +NI+C
Sbjct: 53 KCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISPK----MPVCKGHLGQPLNIFC 106
Query: 137 LNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSND--RVQGVISQLE 194
L C +C G H + + +++ D L S + R +S+L
Sbjct: 107 LTDMQLICGICATRGEHTKHVFCSIEDAYAQER----DAFESLFQSFETWRRGDALSRL- 161
Query: 195 DTCKTIE----ECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKK 250
DT +T + + K ++ E F+ L L+++KNE+ + ++ I K
Sbjct: 162 DTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINK 221
Query: 251 YSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKI 288
+ L+ F D E VFLQ + +KI
Sbjct: 222 LNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKI 259
>gi|16445412 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 92.8 bits (229), Expect = 6e-19
Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 25/278 (8%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE+ L CPIC +F P V LPC HN C+KC I + S ++ F
Sbjct: 1 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGS-------VRNSLWRPAPF 52
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYC 136
+CP+CR E G+ LQ N ++ I++ Y + P+ P+C+ H + +NI+C
Sbjct: 53 KCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISPK----MPVCKGHLGQPLNIFC 106
Query: 137 LNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSND--RVQGVISQLE 194
L C +C G H + + +++ D L S + R +S+L
Sbjct: 107 LTDMQLICGICATRGEHTKHVFCSIEDAYAQER----DAFESLFQSFETWRRGDALSRL- 161
Query: 195 DTCKTIE----ECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKK 250
DT +T + + K ++ E F+ L L+++KNE+ + ++ I K
Sbjct: 162 DTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINK 221
Query: 251 YSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKI 288
+ L+ F D E VFLQ + +KI
Sbjct: 222 LNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKI 259
>gi|47132521 ret finger protein 2 isoform 1 [Homo sapiens]
Length = 407
Score = 92.8 bits (229), Expect = 6e-19
Identities = 74/278 (26%), Positives = 121/278 (43%), Gaps = 25/278 (8%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M+ LE+ L CPIC +F P V LPC HN C+KC I + S ++ F
Sbjct: 1 MELLEEDLTCPICCSLFDDPRV-LPCSHNFCKKCLEGILEGS-------VRNSLWRPAPF 52
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYC 136
+CP+CR E G+ LQ N ++ I++ Y + P+ P+C+ H + +NI+C
Sbjct: 53 KCPTCRKET--SATGINSLQVNYSLKGIVEKYNKIKISPK----MPVCKGHLGQPLNIFC 106
Query: 137 LNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSND--RVQGVISQLE 194
L C +C G H + + +++ D L S + R +S+L
Sbjct: 107 LTDMQLICGICATRGEHTKHVFCSIEDAYAQER----DAFESLFQSFETWRRGDALSRL- 161
Query: 195 DTCKTIE----ECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKK 250
DT +T + + K ++ E F+ L L+++KNE+ + ++ I K
Sbjct: 162 DTLETSKRKSLQLLTKDSDKVKEFFEKLQHTLDQKKNEILSDFETMKLAVMQAYDPEINK 221
Query: 251 YSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKI 288
+ L+ F D E VFLQ + +KI
Sbjct: 222 LNTILQEQRMAFNIAEAFKDVSEPIVFLQQMQEFREKI 259
>gi|27436877 tripartite motif-containing 59 [Homo sapiens]
Length = 403
Score = 92.0 bits (227), Expect = 1e-18
Identities = 70/286 (24%), Positives = 124/286 (43%), Gaps = 24/286 (8%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
M N E++L CPIC +F P V LPC H CR C +I QAS + R
Sbjct: 1 MHNFEEELTCPICYSIFEDPRV-LPCSHTFCRNCLENILQASGNFYIWRPLRIP-----L 54
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYC 136
+CP+CR + G+ L N + II+ Y+QE D C EH + +N+YC
Sbjct: 55 KCPNCRSITEIAPTGIESLPVNFALRAIIEKYQQED-----HPDIVTCPEHYRQPLNVYC 109
Query: 137 LNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSN-DRVQGVISQLED 195
L + C C G H + L + ++K + L ++ + +I +L++
Sbjct: 110 LLDKKLVCGHCLTIGQHHGHPIDDLQSAYLKEKDTPQKLLEQLTDTHWTDLTHLIEKLKE 169
Query: 196 TCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHL 255
E+ + K+ + + F L LE++K + + + ++Y+ +
Sbjct: 170 QKSHSEKMIQGDKEAVLQYFKELNDTLEQKKKSFLTAL-------CDVGNLINQEYTPQI 222
Query: 256 ENVSKLVESGIQFMDEPEMAVFLQNAKTL--LKKISEASKAFQMEK 299
E + ++ E ++ M + + LQ L L+K+ + + Q+ K
Sbjct: 223 ERMKEIREQQLELM---ALTISLQEESPLKFLEKVDDVRQHVQILK 265
>gi|62865604 tripartite motif protein 31 [Homo sapiens]
Length = 425
Score = 88.6 bits (218), Expect = 1e-17
Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 22/251 (8%)
Query: 15 QTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGG 74
Q ++ L++++ICPICL++ KPV I C HN C KC + I + S G
Sbjct: 5 QFVNKLQEEVICPICLDILQKPVTI-DCGHNFCLKCITQIGE--------------TSCG 49
Query: 75 RFRCPSCRHEVVLDRHGVYGLQRNLLVENIID-IYKQESTRPEKKSDQPMCEEHEEERIN 133
F+CP C+ V + ++ N L+ N+++ I +++ + K + C H +E +
Sbjct: 50 FFKCPLCKTSVRKN-----AIRFNSLLRNLVEKIQALQASEVQSKRKEATCPRH-QEMFH 103
Query: 134 IYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSNDRVQGVISQL 193
+C + C +C+ HK V+ + Q + ++ + I +L V +Q
Sbjct: 104 YFCEDDGKFLCFVCRESKDHKSHNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQG 163
Query: 194 EDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSD 253
+ +KQ + +F+ L+ +LEE KN + I E E + +
Sbjct: 164 VHRVDVFTDQVEHEKQRILTEFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEP 223
Query: 254 HLENVSKLVES 264
L ++ KLV+S
Sbjct: 224 QLNDLKKLVDS 234
>gi|32454739 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 87.8 bits (216), Expect = 2e-17
Identities = 66/296 (22%), Positives = 129/296 (43%), Gaps = 33/296 (11%)
Query: 13 EQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMAS 72
E Q MD ++ L+C ICL+ + P V LPC H C +C + Y+P + T
Sbjct: 11 EVQPMD--KQFLVCSICLDRYQCPKV-LPCLHTFCERCLQN-------YIPAQSLT---- 56
Query: 73 GGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD---------QPM 123
CP CR +L GV LQ N + ++++ +Q D +P+
Sbjct: 57 ---LSCPVCRQTSILPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVAGRPL 113
Query: 124 -CEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGS 182
C HE + + YC CE C C+ G H++ L V ++ K+ L + + G
Sbjct: 114 SCPNHEGKTMEFYCEACETAMCGECRA-GEHREHGTVLLRDVVEQHKAALQRQLEAVRGR 172
Query: 183 NDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMT---QVITRTQEE 239
++ I+ + + ++E + ++ F+ L L++RK + + I +++
Sbjct: 173 LPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDLETICGAKQK 232
Query: 240 KLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAF 295
L+ +++ +H+ + E ++ PE+ + ++ + L + A++AF
Sbjct: 233 VLQSQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAAL--AAQAF 286
>gi|32454737 tripartite motif-containing 3 [Homo sapiens]
Length = 744
Score = 87.8 bits (216), Expect = 2e-17
Identities = 66/296 (22%), Positives = 129/296 (43%), Gaps = 33/296 (11%)
Query: 13 EQQTMDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMAS 72
E Q MD ++ L+C ICL+ + P V LPC H C +C + Y+P + T
Sbjct: 11 EVQPMD--KQFLVCSICLDRYQCPKV-LPCLHTFCERCLQN-------YIPAQSLT---- 56
Query: 73 GGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD---------QPM 123
CP CR +L GV LQ N + ++++ +Q D +P+
Sbjct: 57 ---LSCPVCRQTSILPEQGVSALQNNFFISSLMEAMQQAPDGAHDPEDPHPLSVVAGRPL 113
Query: 124 -CEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGS 182
C HE + + YC CE C C+ G H++ L V ++ K+ L + + G
Sbjct: 114 SCPNHEGKTMEFYCEACETAMCGECRA-GEHREHGTVLLRDVVEQHKAALQRQLEAVRGR 172
Query: 183 NDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMT---QVITRTQEE 239
++ I+ + + ++E + ++ F+ L L++RK + + I +++
Sbjct: 173 LPQLSAAIALVGGISQQLQERKAEALAQISAAFEDLEQALQQRKQALVSDLETICGAKQK 232
Query: 240 KLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAF 295
L+ +++ +H+ + E ++ PE+ + ++ + L + A++AF
Sbjct: 233 VLQSQLDTLRQGQEHIGSSCSFAEQALRLGSAPEVLLVRKHMRERLAAL--AAQAF 286
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 80.1 bits (196), Expect = 4e-15
Identities = 46/217 (21%), Positives = 111/217 (51%), Gaps = 1/217 (0%)
Query: 109 KQESTRPEKKSDQPMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQ 168
K+E + + +E ++ +I+ YC C+ P + KVFG HKD +V+ L
Sbjct: 3486 KEEDQLSSEVVTEKAQKELKKSQIDTYCYTCKCPISATDKVFGTHKDHEVSTLDTAISAV 3545
Query: 169 KSELSDGIAILVGSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNE 228
K +L++ + L + R++ +S++E TIEE C K ++ L E+ + + + + +E
Sbjct: 3546 KVQLAEFLENLQEKSLRIEAFVSEIESFFNTIEENCSKNEKRLEEQNEEMMKKVLAQYDE 3605
Query: 229 MTQVITRTQEEKLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKI 288
Q +++K+E + + + ++ +E+ ++ +E + AVFL + + + +++
Sbjct: 3606 KAQSFEEVKKKKMEFLHEQMVHFLQSMDTAKDTLETIVREAEELDEAVFLTSFEEINERL 3665
Query: 289 SEASKA-FQMEKIEHGYENMNHFTVNLNREEKIIREI 324
A ++ +EK+ + H+ + R +++++++
Sbjct: 3666 LSAMESTASLEKMPAAFSLFEHYDDSSARSDQMLKQV 3702
>gi|194248081 tripartite motif-containing 2 isoform 2 [Homo sapiens]
Length = 744
Score = 79.7 bits (195), Expect = 5e-15
Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 35/224 (15%)
Query: 20 LEKQ-LICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRFRC 78
++KQ LIC ICLE + P V LPC H C +C + Y+P T C
Sbjct: 16 IDKQFLICSICLERYKNPKV-LPCLHTFCERCLQN-------YIPAHSLT-------LSC 60
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD-----------QPM-CEE 126
P CR +L GV LQ N + N++D+ ++ ++S +P+ C
Sbjct: 61 PVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPN 120
Query: 127 HEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSNDRV 186
H+ + YC +CE C C G H + PL V ++ K+ L L N R+
Sbjct: 121 HDGNVMEFYCQSCETAMCREC-TEGEHAEHPTVPLKDVVEQHKASLQ---VQLDAVNKRL 176
Query: 187 QGVISQLEDTCKTIEECCRKQK---QELCEKFDYLYGILEERKN 227
+ S L+ + I + ++ ++ FD L L RK+
Sbjct: 177 PEIDSALQFISEIIHQLTNQKASIVDDIHSTFDELQKTLNVRKS 220
>gi|194248079 tripartite motif-containing 2 isoform 1 [Homo sapiens]
Length = 771
Score = 79.7 bits (195), Expect = 5e-15
Identities = 61/224 (27%), Positives = 95/224 (42%), Gaps = 35/224 (15%)
Query: 20 LEKQ-LICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRFRC 78
++KQ LIC ICLE + P V LPC H C +C + Y+P T C
Sbjct: 43 IDKQFLICSICLERYKNPKV-LPCLHTFCERCLQN-------YIPAHSLT-------LSC 87
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSD-----------QPM-CEE 126
P CR +L GV LQ N + N++D+ ++ ++S +P+ C
Sbjct: 88 PVCRQTSILPEKGVAALQNNFFITNLMDVLQRTPGSNAEESSILETVTAVAAGKPLSCPN 147
Query: 127 HEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSNDRV 186
H+ + YC +CE C C G H + PL V ++ K+ L L N R+
Sbjct: 148 HDGNVMEFYCQSCETAMCREC-TEGEHAEHPTVPLKDVVEQHKASLQ---VQLDAVNKRL 203
Query: 187 QGVISQLEDTCKTIEECCRKQK---QELCEKFDYLYGILEERKN 227
+ S L+ + I + ++ ++ FD L L RK+
Sbjct: 204 PEIDSALQFISEIIHQLTNQKASIVDDIHSTFDELQKTLNVRKS 247
>gi|15011941 tripartite motif protein TRIM4 isoform beta [Homo
sapiens]
Length = 474
Score = 78.2 bits (191), Expect = 1e-14
Identities = 61/284 (21%), Positives = 119/284 (41%), Gaps = 25/284 (8%)
Query: 18 DNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRFR 77
++++++L CPICL+ F PV I C HN CR C + P GG F
Sbjct: 4 EDIQEELTCPICLDYFQDPVSI-ECGHNFCRGC------LHRNWAP--------GGGPFP 48
Query: 78 CPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYCL 137
CP CRH L+ N + + + ++ P +C H E + ++C
Sbjct: 49 CPECRHP-----SAPAALRPNWALARLTEKTQRRRLGPVPPG---LCGRHWEP-LRLFCE 99
Query: 138 NCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSNDRVQGVISQLEDTC 197
+ + P C +C+ H+ +AP+ F+ + +L LV +V +
Sbjct: 100 DDQRPVCLVCRESQEHQTHAMAPIDEAFESYREKLLKSQRNLVAKMKKVMHLQDVEVKNA 159
Query: 198 KTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHLEN 257
++ + Q+ + +F L+ L E ++ Q + + +EE + + K + + +
Sbjct: 160 TQWKDKIKSQRMRISTEFSKLHNFLVEEEDLFLQRLNKEEEETKKKLNENTLKLNQTIAS 219
Query: 258 VSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIE 301
+ KL+ + P + + LQN K +L + + +E ++
Sbjct: 220 LKKLILEVGEKSQAPTLEL-LQNPKEVLTRSEIQDVNYSLEAVK 262
>gi|89886468 fibronectin type III and SPRY domain containing 1-like
isoform 1 [Homo sapiens]
Length = 498
Score = 78.2 bits (191), Expect = 1e-14
Identities = 48/159 (30%), Positives = 83/159 (52%), Gaps = 1/159 (0%)
Query: 168 QKSELSDGIAILVGSNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKN 227
QK L I+ L ND +Q I L T K ++E EL E+FD LY IL+E K
Sbjct: 4 QKEALQRIISTLANKNDEIQNFIDTLHHTLKGVQENSSNILSELDEEFDSLYSILDEVKE 63
Query: 228 EMTQVITRTQEEKLEHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKK 287
M I + Q K + +++ I + ++ LEN +L+E + +D E F + A+ + +
Sbjct: 64 SMINCIKQEQARKSQELQSQISQCNNALENSEELLEFATRSLDIKEPEEFSKAARQIKDR 123
Query: 288 ISEASKAFQMEKIEHGYENMNHFTVNLNREEKIIREIDF 326
++ AS AF++ +NM H V+ ++E ++++ + F
Sbjct: 124 VTMAS-AFRLSLKPKVSDNMTHLMVDFSQERQMLQTLKF 161
>gi|134288906 tripartite motif-containing 67 [Homo sapiens]
Length = 783
Score = 77.8 bits (190), Expect = 2e-14
Identities = 50/205 (24%), Positives = 99/205 (48%)
Query: 122 PMCEEHEEERINIYCLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVG 181
P C EHE E ++YC++C P C LC G H +V PL ++++ K++LS + +
Sbjct: 301 PTCPEHEMENYSMYCVSCRTPVCYLCLEEGRHAKHEVKPLGAMWKQHKAQLSQALNGVSD 360
Query: 182 SNDRVQGVISQLEDTCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKL 241
+ + QL++ + I+E + L + D L L +K ++ +T+ +E KL
Sbjct: 361 KAKEAKEFLVQLKNILQQIQENGLDYEACLVAQCDALVDALTRQKAKLLTKVTKEREHKL 420
Query: 242 EHVRALIKKYSDHLENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIE 301
+ V I + L + L+E ++ + E + + FLQ + L+K++ + + + +E
Sbjct: 421 KMVWDQINHCTLKLRQSTGLMEYCLEVIKENDPSGFLQISDALIKRVQVSQEQWVKGALE 480
Query: 302 HGYENMNHFTVNLNREEKIIREIDF 326
T++ + I ++DF
Sbjct: 481 PKVSAEFDLTLDSEPLLQAIHQLDF 505
Score = 44.3 bits (103), Expect = 2e-04
Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 6/85 (7%)
Query: 71 ASGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQ------ESTRPEKKSDQPMC 124
+S CP C LD G+ G QRN L+E I+ Y+Q ++ + +C
Sbjct: 152 SSSSSITCPQCHRSASLDHRGLRGFQRNRLLEAIVQRYQQGRGAVPGTSAAAAVAICQLC 211
Query: 125 EEHEEERINIYCLNCEVPTCSLCKV 149
+ E C C+V CS C++
Sbjct: 212 DRTPPEPAATLCEQCDVLYCSACQL 236
Score = 43.5 bits (101), Expect = 4e-04
Identities = 17/35 (48%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 20 LEKQLICPICLEMFTKPVVILPCQHNLCRKCASDI 54
+E++L CP+C +F +P+ ILPC HN+C CA I
Sbjct: 1 MEEELKCPVCGSLFREPI-ILPCSHNVCLPCARTI 34
>gi|217035095 tripartite motif-containing 62 [Homo sapiens]
Length = 475
Score = 77.4 bits (189), Expect = 2e-14
Identities = 59/273 (21%), Positives = 115/273 (42%), Gaps = 24/273 (8%)
Query: 19 NLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRFRC 78
+L+ +L+C ICL ++ PV L C+H CR+C ++ + A G R C
Sbjct: 4 SLKDELLCSICLSIYQDPVS-LGCEHYFCRRCITEHWVRQE-----------AQGAR-DC 50
Query: 79 PSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQ---ESTRPEKKSDQPMCEEHEEERINIY 135
P CR L +L + NI++ Y ++ +++ +P C+ H+ ++ ++
Sbjct: 51 PECRRTFAEP-----ALAPSLKLANIVERYSSFPLDAILNARRAARP-CQAHD--KVKLF 102
Query: 136 CLNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSNDRVQGVISQLED 195
CL C C H+ QV + F + EL D + L S + L+
Sbjct: 103 CLTDRALLCFFCDEPALHEQHQVTGIDDAFDELQRELKDQLQALQDSEREHTEALQLLKR 162
Query: 196 TCKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSDHL 255
+ + + + E F+ L+ +L ER+ M + + L + +++YS L
Sbjct: 163 QLAETKSSTKSLRTTIGEAFERLHRLLRERQKAMLEELEADTARTLTDIEQKVQRYSQQL 222
Query: 256 ENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKI 288
V + + + + E + FL +L +++
Sbjct: 223 RKVQEGAQILQERLAETDRHTFLAGVASLSERL 255
>gi|25777698 tripartite motif-containing 39 isoform 2 [Homo sapiens]
Length = 488
Score = 76.6 bits (187), Expect = 4e-14
Identities = 67/317 (21%), Positives = 132/317 (41%), Gaps = 40/317 (12%)
Query: 17 MDNLEKQLICPICLEMFTKPVVILPCQHNLCRKCASDIFQASNPYLPTRGGTTMASGGRF 76
++NL+ + C +CLE +PV+I C HN C+ C + ++ P
Sbjct: 20 LENLQVEASCSVCLEYLKEPVII-ECGHNFCKACITRWWEDLERDFP------------- 65
Query: 77 RCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESTRPEKKSDQPMCEEHEEERINIYC 136
CP CR L+ N + ++++I KQ K D+ +C +H E ++++C
Sbjct: 66 -CPVCRKT-----SRYRSLRPNRQLGSMVEIAKQLQAVKRKIRDESLCPQHHEA-LSLFC 118
Query: 137 LNCEVPTCSLCKVFGAHKDCQVAPLTHVFQRQKSELSDGIAILVGSNDRVQGVISQLEDT 196
+ C +C + H+ V PL Q K +L + L + S E
Sbjct: 119 YEDQEAVCLICAISHTHRAHTVVPLDDATQEYKEKLQKCLEPLEQKLQEITRCKSSEEKK 178
Query: 197 CKTIEECCRKQKQELCEKFDYLYGILEERKNEMTQVITRTQEEKLEHVRALIKKYSD--- 253
++ ++Q++ +F+ L+ L+E + + + +++ L+ +R D
Sbjct: 179 PGELKRLVESRRQQILREFEELHRRLDEEQQVLLSRLEEEEQDILQRLRENAAHLGDKRR 238
Query: 254 ---HL--ENVSKLVESGIQFMDEPEMAVFLQNAKTLLKKISEASKAFQMEKIEHGYE-NM 307
HL E K ++SG + L++ K+ L+K E K ++ + E N
Sbjct: 239 DLAHLAAEVEGKCLQSGFE---------MLKDVKSTLEK-CEKVKTMEVTSVSIELEKNF 288
Query: 308 NHFTVNLNREEKIIREI 324
++F KI++++
Sbjct: 289 SNFPRQYFALRKILKQL 305
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,388,661
Number of Sequences: 37866
Number of extensions: 1051005
Number of successful extensions: 15935
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 836
Number of HSP's that attempted gapping in prelim test: 9484
Number of HSP's gapped (non-prelim): 4382
length of query: 452
length of database: 18,247,518
effective HSP length: 106
effective length of query: 346
effective length of database: 14,233,722
effective search space: 4924867812
effective search space used: 4924867812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.