Guide to the Human Genome
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Name: CXorf41 Sequence: fasta or formatted (214aa) NCBI GI: 33859793
Description:

hypothetical protein LOC139212

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          8           1
 C cysteine            1.4          3           2
 D aspartate           7.0         15           2
 E glutamate          15.0         32           3
 F phenylalanine       2.8          6           2
 G glycine             4.7         10           1
 H histidine           0.0          0           0
 I isoleucine          8.9         19           2
 K lysine              5.1         11           2
 L leucine             8.4         18           2
 M methionine          3.7          8           1
 N asparagine          6.1         13           2
 P proline             5.6         12           2
 Q glutamine           3.7          8           2
 R arginine            1.9          4           1
 S serine              7.9         17           2
 T threonine           7.5         16           1
 V valine              3.7          8           1
 W tryptophan          0.9          2           1
 Y tyrosine            1.9          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC139212 
C14orf104             0.015   kintoun isoform 2 
C14orf104             0.015   kintoun isoform 1 
ADNP                  0.015   activity-dependent neuroprotector 
ADNP                  0.015   activity-dependent neuroprotector 
PIH1D2                0.015   PIH1 domain containing 2 isoform 1 
SDAD1                 0.012   SDA1 domain containing 1 
LOC283685             0.012   PREDICTED: golgi autoantigen, golgin subfamily a-li...
TSPYL2                0.012   TSPY-like 2 
CCDC113               0.012   coiled-coil domain containing 113 isoform 2 
RAP1GAP               0.010   RAP1 GTPase activating protein isoform b 
PELP1                 0.010   proline, glutamic acid and leucine rich protein 1 [...
CCDC113               0.010   coiled-coil domain containing 113 isoform 1 
WDR44                 0.010   WD repeat domain 44 protein 
P2RX5                 0.010   purinergic receptor P2X5 isoform B 
P2RX5                 0.010   purinergic receptor P2X5 isoform A 
CTDP1                 0.007   CTD (carboxy-terminal domain, RNA polymerase II, pol...
CTDP1                 0.007   CTD (carboxy-terminal domain, RNA polymerase II, pol...
ZNF148                0.007   zinc finger protein 148 
NEK1                  0.007   NIMA-related kinase 1 
KIF20B                0.007   M-phase phosphoprotein 1 
ZC3H14                0.007   zinc finger CCCH-type containing 14 isoform 3 
C1orf26               0.007   hypothetical protein LOC54823 
C1orf26               0.007   hypothetical protein LOC54823 
CAPN12                0.007   calpain 12 
RAP1GAP               0.007   RAP1 GTPase activating protein isoform c 
RAP1GAP               0.007   RAP1 GTPase activating protein isoform a 
MAP1A                 0.007   microtubule-associated protein 1A 
MGA                   0.007   MAX gene associated 
ITK                   0.005   IL2-inducible T-cell kinase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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