Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SYNE2 Sequence: fasta or formatted (429aa) NCBI GI: 33624861
Description:

spectrin repeat containing, nuclear envelope 2 isoform 2

Referenced in:

Spectrin and Plectin Families

Other entries for this name:
alt prot [6885aa] spectrin repeat containing, nuclear envelope 2 isoform 1
alt prot [6907aa] spectrin repeat containing, nuclear envelope 2 isoform 5
alt prot [556aa] spectrin repeat containing, nuclear envelope 2 isoform 4
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         29           2
 C cysteine            1.2          5           1
 D aspartate           4.4         19           1
 E glutamate           8.6         37           3
 F phenylalanine       2.6         11           2
 G glycine             5.1         22           2
 H histidine           1.2          5           1
 I isoleucine          2.8         12           1
 K lysine              6.1         26           2
 L leucine            13.5         58           9
 M methionine          2.1          9           1
 N asparagine          3.3         14           2
 P proline             7.7         33           3
 Q glutamine           7.9         34           2
 R arginine            6.5         28           2
 S serine              7.9         34           2
 T threonine           4.7         20           2
 V valine              5.1         22           2
 W tryptophan          1.2          5           1
 Y tyrosine            1.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spectrin repeat containing, nuclear envelope 2 isofo... 
SYNE2                 0.995   spectrin repeat containing, nuclear envelope 2 isofo...
SYNE2                 0.955   spectrin repeat containing, nuclear envelope 2 isof...
SYNE2                 0.949   spectrin repeat containing, nuclear envelope 2 isof...
SYNE1                 0.344   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.344   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.344   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.344   spectrin repeat containing, nuclear envelope 1 isof...
C14orf49              0.063   nesprin-3 
MACF1                 0.034   microfilament and actin filament cross-linker protei...
MACF1                 0.034   microfilament and actin filament cross-linker protei...
SPTBN2                0.030   spectrin, beta, non-erythrocytic 2 
DST                   0.029   dystonin isoform 4 
DST                   0.029   dystonin isoform 3 
DST                   0.029   dystonin isoform 2 
DST                   0.029   dystonin isoform 1 
DST                   0.029   dystonin isoform 1eA precursor 
SPTAN1                0.028   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.028   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTB                  0.025   spectrin beta isoform a 
SPTB                  0.025   spectrin beta isoform b 
CCDC88C               0.025   DVL-binding protein DAPLE 
LOC283767             0.024   golgi autoantigen, golgin subfamily a-like 
SPTBN1                0.023   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.023   spectrin, beta, non-erythrocytic 1 isoform 1 
LOC727832             0.022   golgi autoantigen, golgin subfamily a-like 
LOC283685             0.021   PREDICTED: golgi autoantigen, golgin subfamily a-li...
IKIP                  0.021   IKK interacting protein isoform 1 
LOC440243             0.021   PREDICTED: Putative golgin subfamily A member 6-lik...
SPTA1                 0.018   spectrin, alpha, erythrocytic 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press