SYNE1 5536

Name: SYNE1	Sequence: fasta or formatted (982aa)		NCBI GI: 154277120
Description: spectrin repeat containing, nuclear envelope 1 isoform 3		Referenced in: Spectrin and Plectin Families
Other entries for this name: alt prot [8797aa] spectrin repeat containing, nuclear envelope 1 isoform 1 alt prot [3321aa] spectrin repeat containing, nuclear envelope 1 isoform 4 alt prot [8749aa] spectrin repeat containing, nuclear envelope 1 isoform 2
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.7 56 2 C cysteine 1.9 19 1 D aspartate 6.7 66 2 E glutamate 9.7 95 4 F phenylalanine 2.0 20 1 G glycine 3.9 38 2 H histidine 2.9 28 2 I isoleucine 4.9 48 2 K lysine 6.0 59 2 L leucine 13.7 135 6 M methionine 1.8 18 1 N asparagine 3.4 33 2 P proline 3.3 32 3 Q glutamine 6.5 64 2 R arginine 6.8 67 2 S serine 10.3 101 3 T threonine 3.6 35 1 V valine 3.8 37 1 W tryptophan 1.7 17 1 Y tyrosine 1.4 14 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 spectrin repeat containing, nuclear envelope 1 isof... SYNE1 1.000 spectrin repeat containing, nuclear envelope 1 isofo... SYNE1 0.970 spectrin repeat containing, nuclear envelope 1 isof... SYNE1 0.970 spectrin repeat containing, nuclear envelope 1 isof... SYNE2 0.489 spectrin repeat containing, nuclear envelope 2 isof... SYNE2 0.473 spectrin repeat containing, nuclear envelope 2 isof... SYNE2 0.176 spectrin repeat containing, nuclear envelope 2 isofo... SYNE2 0.148 spectrin repeat containing, nuclear envelope 2 isofo... DST 0.053 dystonin isoform 4 DST 0.053 dystonin isoform 3 DST 0.053 dystonin isoform 2 DST 0.053 dystonin isoform 1 DST 0.053 dystonin isoform 1eA precursor MACF1 0.049 microfilament and actin filament cross-linker protei... MACF1 0.049 microfilament and actin filament cross-linker protei... DMD 0.044 dystrophin Dp427c isoform DMD 0.044 dystrophin Dp260-2 isoform DMD 0.044 dystrophin Dp260-1 isoform DMD 0.044 dystrophin Dp427p2 isoform DMD 0.044 dystrophin Dp427p1 isoform DMD 0.044 dystrophin Dp427l isoform DMD 0.044 dystrophin Dp427m isoform UTRN 0.035 utrophin SPTBN1 0.034 spectrin, beta, non-erythrocytic 1 isoform 2 SPTBN1 0.034 spectrin, beta, non-erythrocytic 1 isoform 1 SPTAN1 0.033 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... SPTAN1 0.033 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ... SPTBN2 0.031 spectrin, beta, non-erythrocytic 2 DMD 0.030 dystrophin Dp140c isoform DMD 0.030 dystrophin Dp140bc isoform Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.