Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SPTA1 Sequence: fasta or formatted (2419aa) NCBI GI: 115298659
Description:

spectrin, alpha, erythrocytic 1

Referenced in:

Hematopoiesis and Erythrocytes
Spectrin and Plectin Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.7        210           3
 C cysteine            0.9         21           1
 D aspartate           7.2        174           2
 E glutamate          12.4        300           4
 F phenylalanine       3.1         75           2
 G glycine             3.8         92           2
 H histidine           2.8         68           2
 I isoleucine          3.9         94           2
 K lysine              7.6        184           4
 L leucine            12.2        295           3
 M methionine          1.6         38           1
 N asparagine          4.1         98           2
 P proline             1.7         40           1
 Q glutamine           7.1        172           4
 R arginine            5.7        137           4
 S serine              5.3        129           2
 T threonine           3.9         94           2
 V valine              4.3        103           2
 W tryptophan          1.8         43           2
 Y tyrosine            2.1         52           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   spectrin, alpha, erythrocytic 1 
SPTAN1                0.559   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTAN1                0.558   spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...
SPTBN5                0.114   spectrin, beta, non-erythrocytic 5 
SPTBN1                0.099   spectrin, beta, non-erythrocytic 1 isoform 2 
SPTBN1                0.099   spectrin, beta, non-erythrocytic 1 isoform 1 
SPTBN2                0.096   spectrin, beta, non-erythrocytic 2 
SPTB                  0.094   spectrin beta isoform a 
SPTB                  0.094   spectrin beta isoform b 
SPTBN4                0.070   spectrin, beta, non-erythrocytic 4 isoform sigma1 [...
ACTN1                 0.041   actinin, alpha 1 isoform b 
ACTN1                 0.040   actinin, alpha 1 isoform c 
DST                   0.040   dystonin isoform 4 
DST                   0.040   dystonin isoform 3 
DST                   0.040   dystonin isoform 2 
DST                   0.040   dystonin isoform 1 
DST                   0.040   dystonin isoform 1eA precursor 
ACTN4                 0.040   actinin, alpha 4 
ACTN1                 0.039   actinin, alpha 1 isoform a 
ACTN2                 0.038   actinin, alpha 2 
MACF1                 0.035   microfilament and actin filament cross-linker protei...
MACF1                 0.035   microfilament and actin filament cross-linker protei...
ACTN3                 0.034   actinin, alpha 3 
SPTBN4                0.034   spectrin, beta, non-erythrocytic 4 isoform sigma5 [...
SYNE1                 0.026   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.026   spectrin repeat containing, nuclear envelope 1 isof...
SYNE1                 0.025   spectrin repeat containing, nuclear envelope 1 isofo...
DMD                   0.025   dystrophin Dp427c isoform 
DMD                   0.025   dystrophin Dp427p2 isoform 
DMD                   0.025   dystrophin Dp427p1 isoform 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press