Guide to the Human Genome
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Search of human proteins with 33598916

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33598916 claudin 10 isoform a [Homo sapiens]
         (226 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33598916 claudin 10 isoform a [Homo sapiens]                       465   e-131
gi|231569235 claudin 10 isoform a_i1 [Homo sapiens]                   412   e-116
gi|5921465 claudin 10 isoform b [Homo sapiens]                        346   8e-96
gi|7656981 claudin 15 [Homo sapiens]                                  155   2e-38
gi|183979973 claudin 19 isoform a [Homo sapiens]                      152   2e-37
gi|183979975 claudin 19 isoform b [Homo sapiens]                      152   2e-37
gi|153792186 claudin 7 [Homo sapiens]                                 145   2e-35
gi|7705961 claudin 18 isoform 1 [Homo sapiens]                        135   3e-32
gi|50345279 claudin 18 isoform 2 [Homo sapiens]                       134   8e-32
gi|10863887 claudin 1 [Homo sapiens]                                  129   2e-30
gi|40788011 claudin 8 [Homo sapiens]                                  126   2e-29
gi|4502875 claudin 3 [Homo sapiens]                                   124   5e-29
gi|195947374 claudin 5 [Homo sapiens]                                 122   2e-28
gi|195947372 claudin 5 [Homo sapiens]                                 122   2e-28
gi|4502877 claudin 4 [Homo sapiens]                                   116   1e-26
gi|6912316 claudin 17 [Homo sapiens]                                  111   4e-25
gi|153792768 claudin 6 [Homo sapiens]                                 109   2e-24
gi|225703142 claudin 14 [Homo sapiens]                                108   4e-24
gi|21536294 claudin 14 [Homo sapiens]                                 108   4e-24
gi|225703138 claudin 14 [Homo sapiens]                                108   4e-24
gi|6912314 claudin 14 [Homo sapiens]                                  108   4e-24
gi|225703140 claudin 14 [Homo sapiens]                                108   4e-24
gi|11141861 claudin 9 [Homo sapiens]                                  107   6e-24
gi|47716519 claudin 20 [Homo sapiens]                                 107   6e-24
gi|9966781 claudin 2 [Homo sapiens]                                   103   1e-22
gi|10938016 claudin 11 [Homo sapiens]                                  88   5e-18
gi|162417973 claudin 22 [Homo sapiens]                                 73   2e-13
gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]                 72   3e-13
gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]                 72   3e-13
gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]                 72   3e-13

>gi|33598916 claudin 10 isoform a [Homo sapiens]
          Length = 226

 Score =  465 bits (1197), Expect = e-131
 Identities = 226/226 (100%), Positives = 226/226 (100%)

Query: 1   MSRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFH 60
           MSRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFH
Sbjct: 1   MSRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFH 60

Query: 61  CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGI 120
           CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGI
Sbjct: 61  CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGI 120

Query: 121 VFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFS 180
           VFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFS
Sbjct: 121 VFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFS 180

Query: 181 ISDNNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 226
           ISDNNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV
Sbjct: 181 ISDNNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 226


>gi|231569235 claudin 10 isoform a_i1 [Homo sapiens]
          Length = 207

 Score =  412 bits (1060), Expect = e-116
 Identities = 207/226 (91%), Positives = 207/226 (91%), Gaps = 19/226 (8%)

Query: 1   MSRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFH 60
           MSRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAG       
Sbjct: 1   MSRAQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAG------- 53

Query: 61  CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGI 120
                       YIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGI
Sbjct: 54  ------------YIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGI 101

Query: 121 VFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFS 180
           VFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFS
Sbjct: 102 VFILSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFS 161

Query: 181 ISDNNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 226
           ISDNNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV
Sbjct: 162 ISDNNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 207


>gi|5921465 claudin 10 isoform b [Homo sapiens]
          Length = 228

 Score =  346 bits (888), Expect = 8e-96
 Identities = 170/223 (76%), Positives = 189/223 (84%)

Query: 4   AQIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRP 63
           ++I A +  + G+  + +   ++ WKV+T   +VIT    +  LW  C  ++ G  +C+ 
Sbjct: 6   SEIIAFMVSISGWVLVSSTLPTDYWKVSTIDGTVITTATYWANLWKACVTDSTGVSNCKD 65

Query: 64  HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 123
             ++  + GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI
Sbjct: 66  FPSMLALDGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 125

Query: 124 LSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISD 183
           LSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISD
Sbjct: 126 LSGLCSMTGCSLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCFSISD 185

Query: 184 NNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 226
           NNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV
Sbjct: 186 NNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 228


>gi|7656981 claudin 15 [Homo sapiens]
          Length = 228

 Score =  155 bits (393), Expect = 2e-38
 Identities = 83/218 (38%), Positives = 127/218 (58%), Gaps = 13/218 (5%)

Query: 17  GALVAATT--SNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVAGYI 74
           G L+   T  ++ W+V+T   +VIT   +++ LW +CA ++LG ++C    ++  ++GYI
Sbjct: 16  GLLMLGVTLPNSYWRVSTVHGNVITTNTIFENLWFSCATDSLGVYNCWEFPSMLALSGYI 75

Query: 75  QACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSD-KAKAKIACLAGIVFILSGLCSMTGC 133
           QACR LMI A+ LGF G +  + G++CT +GG +   KAK+A  AG + IL+G+C M   
Sbjct: 76  QACRALMITAILLGFLGLLLGIAGLRCTNIGGLELSRKAKLAATAGALHILAGICGMVAI 135

Query: 134 SLYANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGGVIFCF-----SISDNNKTP 188
           S YA  IT +FFDPL+   KYELG AL++GW+ + + I+GG+  C      S  D   + 
Sbjct: 136 SWYAFNITRDFFDPLYPGTKYELGPALYLGWSASLISILGGLCLCSACCCGSDEDPAASA 195

Query: 189 RYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 226
           R  Y    SVM   T    G+     +   ++ +NAYV
Sbjct: 196 RRPYQAPVSVMPVATSDQEGD-----SSFGKYGRNAYV 228


>gi|183979973 claudin 19 isoform a [Homo sapiens]
          Length = 224

 Score =  152 bits (384), Expect = 2e-37
 Identities = 74/180 (41%), Positives = 114/180 (63%), Gaps = 3/180 (1%)

Query: 2   SRAQIWALVSGVGGFGALVAATTSNEWKVTTRAS-SVITATWVYQGLWMNCAGNALGSFH 60
           S  Q+      +GG+  ++A+T   +WK ++ A  ++ITA  +Y+GLWM+CA  + G   
Sbjct: 4   SGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQ 63

Query: 61  CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKIACLAG 119
           C+ + ++  + G+IQ+ R LM+ AV LGF   + ++ GMKCT+VG S+  AK ++A   G
Sbjct: 64  CKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGG 123

Query: 120 IVFILSGLCSMTGCSLYANKITTEFFDPLF-VEQKYELGAALFIGWAGASLCIIGGVIFC 178
            +FIL+GLC++T  S YA  +T EFF+P   V  +YE G ALF+GWA A L ++GG   C
Sbjct: 124 ALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGSFLC 183


>gi|183979975 claudin 19 isoform b [Homo sapiens]
          Length = 211

 Score =  152 bits (384), Expect = 2e-37
 Identities = 74/180 (41%), Positives = 114/180 (63%), Gaps = 3/180 (1%)

Query: 2   SRAQIWALVSGVGGFGALVAATTSNEWKVTTRAS-SVITATWVYQGLWMNCAGNALGSFH 60
           S  Q+      +GG+  ++A+T   +WK ++ A  ++ITA  +Y+GLWM+CA  + G   
Sbjct: 4   SGLQLLGYFLALGGWVGIIASTALPQWKQSSYAGDAIITAVGLYEGLWMSCASQSTGQVQ 63

Query: 61  CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDK-AKAKIACLAG 119
           C+ + ++  + G+IQ+ R LM+ AV LGF   + ++ GMKCT+VG S+  AK ++A   G
Sbjct: 64  CKLYDSLLALDGHIQSARALMVVAVLLGFVAMVLSVVGMKCTRVGDSNPIAKGRVAIAGG 123

Query: 120 IVFILSGLCSMTGCSLYANKITTEFFDPLF-VEQKYELGAALFIGWAGASLCIIGGVIFC 178
            +FIL+GLC++T  S YA  +T EFF+P   V  +YE G ALF+GWA A L ++GG   C
Sbjct: 124 ALFILAGLCTLTAVSWYATLVTQEFFNPSTPVNARYEFGPALFVGWASAGLAVLGGSFLC 183


>gi|153792186 claudin 7 [Homo sapiens]
          Length = 211

 Score =  145 bits (367), Expect = 2e-35
 Identities = 72/179 (40%), Positives = 111/179 (62%), Gaps = 3/179 (1%)

Query: 15  GFGALVAATTSNEWKVTTRAS-SVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVAGY 73
           G+  LVA T   +W++++ A  ++ITA  +Y+GLWM+C   + G   C+ + ++  ++  
Sbjct: 17  GWVGLVACTAIPQWQMSSYAGDNIITAQAMYKGLWMDCVTQSTGMMSCKMYDSVLALSAA 76

Query: 74  IQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKIACLAGIVFILSGLCSMTG 132
           +QA R LM+ ++ LGF     A  GMKCT+ GG DK  KA+IA   GI+FI++GL ++  
Sbjct: 77  LQATRALMVVSLVLGFLAMFVATMGMKCTRCGGDDKVKKARIAMGGGIIFIVAGLAALVA 136

Query: 133 CSLYANKITTEFFDPLF-VEQKYELGAALFIGWAGASLCIIGGVIFCFSISDNNKTPRY 190
           CS Y ++I T+F++PL     KYE G A+FIGWAG++L I+GG +   S   N     Y
Sbjct: 137 CSWYGHQIVTDFYNPLIPTNIKYEFGPAIFIGWAGSALVILGGALLSCSCPGNESKAGY 195


>gi|7705961 claudin 18 isoform 1 [Homo sapiens]
          Length = 261

 Score =  135 bits (340), Expect = 3e-32
 Identities = 82/251 (32%), Positives = 124/251 (49%), Gaps = 37/251 (14%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPH 64
           Q+ A +  + G    +AAT  + W       + +T+ + Y+GLW +C   + G   CRP+
Sbjct: 7   QVVAFLLSILGLAGCIAATGMDMWSTQDLYDNPVTSVFQYEGLWRSCVRQSSGFTECRPY 66

Query: 65  FTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGG-SDKAKAKIACLAGIVFI 123
           FTI  +   +QA R LMI  + LG  G + ++F +KC ++G   D AKA +   +GI+FI
Sbjct: 67  FTILGLPAMLQAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFI 126

Query: 124 LSGLCSMTGCSLYANKITTEFFDPL------------FVEQKYELGAALFIGWAGASLCI 171
           +SGLC++ G S++AN + T F+                V+ +Y  GAALF+GW    L +
Sbjct: 127 VSGLCAIAGVSVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTL 186

Query: 172 IGGVIFCFSI------SDNNKTPRYTYNG-----------ATSVMSSRTK----YHGG-- 208
           IGGV+ C +         N K   Y  +G           A++   S TK    Y GG  
Sbjct: 187 IGGVMMCIACRGLAPEETNYKAVSYHASGHSVAYKPGGFKASTGFGSNTKNKKIYDGGAR 246

Query: 209 -EDFKTTNPSK 218
            ED   + PSK
Sbjct: 247 TEDEVQSYPSK 257


>gi|50345279 claudin 18 isoform 2 [Homo sapiens]
          Length = 261

 Score =  134 bits (336), Expect = 8e-32
 Identities = 80/241 (33%), Positives = 121/241 (50%), Gaps = 37/241 (15%)

Query: 15  GFGALVAATTSNEWKVTTRASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVAGYI 74
           G   ++AAT  ++W      ++ +TA + YQGLW +C   + G   CR +FT+  +   +
Sbjct: 17  GIAGIIAATCMDQWSTQDLYNNPVTAVFNYQGLWRSCVRESSGFTECRGYFTLLGLPAML 76

Query: 75  QACRGLMIAAVSLGFFGSIFALFGMKCTKVGG-SDKAKAKIACLAGIVFILSGLCSMTGC 133
           QA R LMI  + LG  G + ++F +KC ++G   D AKA +   +GI+FI+SGLC++ G 
Sbjct: 77  QAVRALMIVGIVLGAIGLLVSIFALKCIRIGSMEDSAKANMTLTSGIMFIVSGLCAIAGV 136

Query: 134 SLYANKITTEFFDPL------------FVEQKYELGAALFIGWAGASLCIIGGVIFCFSI 181
           S++AN + T F+                V+ +Y  GAALF+GW    L +IGGV+ C + 
Sbjct: 137 SVFANMLVTNFWMSTANMYTGMGGMVQTVQTRYTFGAALFVGWVAGGLTLIGGVMMCIAC 196

Query: 182 ------SDNNKTPRYTYNG-----------ATSVMSSRTK----YHGG---EDFKTTNPS 217
                   N K   Y  +G           A++   S TK    Y GG   ED   + PS
Sbjct: 197 RGLAPEETNYKAVSYHASGHSVAYKPGGFKASTGFGSNTKNKKIYDGGARTEDEVQSYPS 256

Query: 218 K 218
           K
Sbjct: 257 K 257


>gi|10863887 claudin 1 [Homo sapiens]
          Length = 211

 Score =  129 bits (324), Expect = 2e-30
 Identities = 63/175 (36%), Positives = 104/175 (59%), Gaps = 4/175 (2%)

Query: 9   LVSGVGGFGALVAATTSNEWKVTTRAS-SVITATWVYQGLWMNCAGNALGSFHCRPHFTI 67
           +++ +G  GA+V+ T   +W++ + A  +++TA  +Y+GLWM+C   + G   C+   ++
Sbjct: 12  ILAFLGWIGAIVS-TALPQWRIYSYAGDNIVTAQAMYEGLWMSCVSQSTGQIQCKVFDSL 70

Query: 68  FKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKA-KAKIACLAGIVFILSG 126
             ++  +QA R LM+  + LG      A  GMKC K    D+  K ++A + G +F+L+G
Sbjct: 71  LNLSSTLQATRALMVVGILLGVIAIFVATVGMKCMKCLEDDEVQKMRMAVIGGAIFLLAG 130

Query: 127 LCSMTGCSLYANKITTEFFDPLF-VEQKYELGAALFIGWAGASLCIIGGVIFCFS 180
           L  +   + Y N+I  EF+DP+  V  +YE G ALF GWA ASLC++GG + C S
Sbjct: 131 LAILVATAWYGNRIVQEFYDPMTPVNARYEFGQALFTGWAAASLCLLGGALLCCS 185


>gi|40788011 claudin 8 [Homo sapiens]
          Length = 225

 Score =  126 bits (316), Expect = 2e-29
 Identities = 73/214 (34%), Positives = 118/214 (55%), Gaps = 5/214 (2%)

Query: 10  VSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRPHFTIF 68
           + GVG  G  VA T   +W+V+    ++++     ++GLWMNC   A     C+ + ++ 
Sbjct: 13  LGGVGMVGT-VAVTVMPQWRVSAFIENNIVVFENFWEGLWMNCVRQANIRMQCKIYDSLL 71

Query: 69  KVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTK-VGGSDKAKAKIACLAGIVFILSGL 127
            ++  +QA RGLM AA  + F   + A+ GMKCT+  G ++K KA I   AGI+FI++G+
Sbjct: 72  ALSPDLQAARGLMCAASVMSFLAFMMAILGMKCTRCTGDNEKVKAHILLTAGIIFIITGM 131

Query: 128 CSMTGCSLYANKITTEFFDPLF-VEQKYELGAALFIGWAGASLCIIGGVIFCFSISDNNK 186
             +   S  AN I  +F++ +  V QK ELG AL++GW  A + I+GG +FC     N K
Sbjct: 132 VVLIPVSWVANAIIRDFYNSIVNVAQKRELGEALYLGWTTALVLIVGGALFCCVFCCNEK 191

Query: 187 TPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQF 220
           +  Y Y+   S  +++  YH G+   +     Q+
Sbjct: 192 SSSYRYS-IPSHRTTQKSYHTGKKSPSVYSRSQY 224


>gi|4502875 claudin 3 [Homo sapiens]
          Length = 220

 Score =  124 bits (312), Expect = 5e-29
 Identities = 70/197 (35%), Positives = 113/197 (57%), Gaps = 8/197 (4%)

Query: 13  VGGFGALVAATTSNEWKVTTR-ASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVA 71
           +G  G +V       W+V+    S++IT+  +++GLWMNC   + G   C+ + ++  + 
Sbjct: 15  LGWLGTIVCCALPM-WRVSAFIGSNIITSQNIWEGLWMNCVVQSTGQMQCKVYDSLLALP 73

Query: 72  GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMT 131
             +QA R L++ A+ L  FG + AL G +CT     D AKAKI  +AG++F+L+ L ++ 
Sbjct: 74  QDLQAARALIVVAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFLLAALLTLV 133

Query: 132 GCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSISDNNKTPRY 190
             S  AN I  +F++P+  E QK E+GA L++GWA A+L ++GG + C S     K  +Y
Sbjct: 134 PVSWSANTIIRDFYNPVVPEAQKREMGAGLYVGWAAAALQLLGGALLCCSCPPREK--KY 191

Query: 191 TYNGATSVMSSRTKYHG 207
           T   AT V+ S  +  G
Sbjct: 192 T---ATKVVYSAPRSTG 205


>gi|195947374 claudin 5 [Homo sapiens]
          Length = 303

 Score =  122 bits (307), Expect = 2e-28
 Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTRAS-SVITATWVYQGLWMNCAGNALGSFHCRP 63
           +I  LV  + G+G L+ A     W+VT     +++TA   ++GLWM+C   + G   C+ 
Sbjct: 92  EILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKV 151

Query: 64  HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 123
           + ++  ++  +QA R L ++AV L F      L G +CT       AKA++A   G++++
Sbjct: 152 YDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYL 211

Query: 124 LSGLCSMTGCSLYANKITTEFFDP-LFVEQKYELGAALFIGWAGASLCIIGGVIFC 178
             GL ++     +AN +  EF+DP + V QKYELGAAL+IGWA  +L ++GG + C
Sbjct: 212 FCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCLLC 267


>gi|195947372 claudin 5 [Homo sapiens]
          Length = 303

 Score =  122 bits (307), Expect = 2e-28
 Identities = 62/176 (35%), Positives = 101/176 (57%), Gaps = 2/176 (1%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTRAS-SVITATWVYQGLWMNCAGNALGSFHCRP 63
           +I  LV  + G+G L+ A     W+VT     +++TA   ++GLWM+C   + G   C+ 
Sbjct: 92  EILGLVLCLVGWGGLILACGLPMWQVTAFLDHNIVTAQTTWKGLWMSCVVQSTGHMQCKV 151

Query: 64  HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 123
           + ++  ++  +QA R L ++AV L F      L G +CT       AKA++A   G++++
Sbjct: 152 YDSVLALSTEVQAARALTVSAVLLAFVALFVTLAGAQCTTCVAPGPAKARVALTGGVLYL 211

Query: 124 LSGLCSMTGCSLYANKITTEFFDP-LFVEQKYELGAALFIGWAGASLCIIGGVIFC 178
             GL ++     +AN +  EF+DP + V QKYELGAAL+IGWA  +L ++GG + C
Sbjct: 212 FCGLLALVPLCWFANIVVREFYDPSVPVSQKYELGAALYIGWAATALLMVGGCLLC 267


>gi|4502877 claudin 4 [Homo sapiens]
          Length = 209

 Score =  116 bits (291), Expect = 1e-26
 Identities = 62/200 (31%), Positives = 110/200 (55%), Gaps = 3/200 (1%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTR-ASSVITATWVYQGLWMNCAGNALGSFHCRP 63
           Q+  +   V G+ A++       W+VT    S+++T+  +++GLWMNC   + G   C+ 
Sbjct: 7   QVMGIALAVLGWLAVMLCCALPMWRVTAFIGSNIVTSQTIWEGLWMNCVVQSTGQMQCKV 66

Query: 64  HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 123
           + ++  +   +QA R L+I ++ +   G + ++ G KCT     + AKAK   +AG+VF+
Sbjct: 67  YDSLLALPQDLQAARALVIISIIVAALGVLLSVVGGKCTNCLEDESAKAKTMIVAGVVFL 126

Query: 124 LSGLCSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSIS 182
           L+GL  +   S  A+ I  +F++PL    QK E+GA+L++GWA + L ++GG + C +  
Sbjct: 127 LAGLMVIVPVSWTAHNIIQDFYNPLVASGQKREMGASLYVGWAASGLLLLGGGLLCCNCP 186

Query: 183 DNNKTP-RYTYNGATSVMSS 201
                P    Y+ A S  +S
Sbjct: 187 PRTDKPYSAKYSAARSAAAS 206


>gi|6912316 claudin 17 [Homo sapiens]
          Length = 224

 Score =  111 bits (278), Expect = 4e-25
 Identities = 67/193 (34%), Positives = 105/193 (54%), Gaps = 7/193 (3%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRP 63
           QI  LV G  G    +A T   +W+V+    S++I    +++GLWMNC   A     C+ 
Sbjct: 7   QIAGLVLGFLGMVGTLATTLLPQWRVSAFVGSNIIVFERLWEGLWMNCIRQARVRLQCKF 66

Query: 64  HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMK---CTKVGGSDKAKAKIACLAGI 120
           + ++  +   ++  R LM  AV+L     +  + GMK   CT  G +++AKA +   +G+
Sbjct: 67  YSSLLALPPALETARALMCVAVALSLIALLIGICGMKQVQCT--GSNERAKAYLLGTSGV 124

Query: 121 VFILSGLCSMTGCSLYANKITTEFFDP-LFVEQKYELGAALFIGWAGASLCIIGGVIFCF 179
           +FIL+G+  +   S  AN I  +F++P + + QK ELGAALF+GWA A++  IGG + C 
Sbjct: 125 LFILTGIFVLIPVSWTANIIIRDFYNPAIHIGQKRELGAALFLGWASAAVLFIGGGLLCG 184

Query: 180 SISDNNKTPRYTY 192
               N K   Y Y
Sbjct: 185 FCCCNRKKQGYRY 197


>gi|153792768 claudin 6 [Homo sapiens]
          Length = 220

 Score =  109 bits (273), Expect = 2e-24
 Identities = 54/153 (35%), Positives = 91/153 (59%), Gaps = 2/153 (1%)

Query: 28  WKVTTR-ASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAVS 86
           WKVT    +S++ A  V++GLWM+C   + G   C+ + ++  +   +QA R L + A+ 
Sbjct: 30  WKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALPQDLQAARALCVIALL 89

Query: 87  LGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFD 146
           +  FG +  L G KCT       +KA++   +GIVF++SG+ ++      A+ I  +F++
Sbjct: 90  VALFGLLVYLAGAKCTTCVEEKDSKARLVLTSGIVFVISGVLTLIPVCWTAHAIIRDFYN 149

Query: 147 PLFVE-QKYELGAALFIGWAGASLCIIGGVIFC 178
           PL  E QK ELGA+L++GWA + L ++GG + C
Sbjct: 150 PLVAEAQKRELGASLYLGWAASGLLLLGGGLLC 182


>gi|225703142 claudin 14 [Homo sapiens]
          Length = 239

 Score =  108 bits (270), Expect = 4e-24
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 3/177 (1%)

Query: 9   LVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRPHFTI 67
           L+S +G  G L+  T    W+ T    ++++TA    +GLWM C  ++ G + C+ + ++
Sbjct: 12  LLSFLGMVGTLIT-TILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSL 70

Query: 68  FKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGL 127
             +   +QA R LM+ +  L       A+ GMKCT+      AK   A L G +FIL+GL
Sbjct: 71  LALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAILGGTLFILAGL 130

Query: 128 CSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSISD 183
             M   S   N +   F++PL     K+E+G AL++G+  +SL +IGG + C S  D
Sbjct: 131 LCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQD 187


>gi|21536294 claudin 14 [Homo sapiens]
          Length = 239

 Score =  108 bits (270), Expect = 4e-24
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 3/177 (1%)

Query: 9   LVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRPHFTI 67
           L+S +G  G L+  T    W+ T    ++++TA    +GLWM C  ++ G + C+ + ++
Sbjct: 12  LLSFLGMVGTLIT-TILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSL 70

Query: 68  FKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGL 127
             +   +QA R LM+ +  L       A+ GMKCT+      AK   A L G +FIL+GL
Sbjct: 71  LALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAILGGTLFILAGL 130

Query: 128 CSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSISD 183
             M   S   N +   F++PL     K+E+G AL++G+  +SL +IGG + C S  D
Sbjct: 131 LCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQD 187


>gi|225703138 claudin 14 [Homo sapiens]
          Length = 239

 Score =  108 bits (270), Expect = 4e-24
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 3/177 (1%)

Query: 9   LVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRPHFTI 67
           L+S +G  G L+  T    W+ T    ++++TA    +GLWM C  ++ G + C+ + ++
Sbjct: 12  LLSFLGMVGTLIT-TILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSL 70

Query: 68  FKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGL 127
             +   +QA R LM+ +  L       A+ GMKCT+      AK   A L G +FIL+GL
Sbjct: 71  LALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAILGGTLFILAGL 130

Query: 128 CSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSISD 183
             M   S   N +   F++PL     K+E+G AL++G+  +SL +IGG + C S  D
Sbjct: 131 LCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQD 187


>gi|6912314 claudin 14 [Homo sapiens]
          Length = 239

 Score =  108 bits (270), Expect = 4e-24
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 3/177 (1%)

Query: 9   LVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRPHFTI 67
           L+S +G  G L+  T    W+ T    ++++TA    +GLWM C  ++ G + C+ + ++
Sbjct: 12  LLSFLGMVGTLIT-TILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSL 70

Query: 68  FKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGL 127
             +   +QA R LM+ +  L       A+ GMKCT+      AK   A L G +FIL+GL
Sbjct: 71  LALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAILGGTLFILAGL 130

Query: 128 CSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSISD 183
             M   S   N +   F++PL     K+E+G AL++G+  +SL +IGG + C S  D
Sbjct: 131 LCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQD 187


>gi|225703140 claudin 14 [Homo sapiens]
          Length = 239

 Score =  108 bits (270), Expect = 4e-24
 Identities = 59/177 (33%), Positives = 94/177 (53%), Gaps = 3/177 (1%)

Query: 9   LVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRPHFTI 67
           L+S +G  G L+  T    W+ T    ++++TA    +GLWM C  ++ G + C+ + ++
Sbjct: 12  LLSFLGMVGTLIT-TILPHWRRTAHVGTNILTAVSYLKGLWMECVWHSTGIYQCQIYRSL 70

Query: 68  FKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGL 127
             +   +QA R LM+ +  L       A+ GMKCT+      AK   A L G +FIL+GL
Sbjct: 71  LALPQDLQAARALMVISCLLSGIACACAVIGMKCTRCAKGTPAKTTFAILGGTLFILAGL 130

Query: 128 CSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSISD 183
             M   S   N +   F++PL     K+E+G AL++G+  +SL +IGG + C S  D
Sbjct: 131 LCMVAVSWTTNDVVQNFYNPLLPSGMKFEIGQALYLGFISSSLSLIGGTLLCLSCQD 187


>gi|11141861 claudin 9 [Homo sapiens]
          Length = 217

 Score =  107 bits (268), Expect = 6e-24
 Identities = 57/168 (33%), Positives = 96/168 (57%), Gaps = 3/168 (1%)

Query: 13  VGGFGALVAATTSNEWKVTTR-ASSVITATWVYQGLWMNCAGNALGSFHCRPHFTIFKVA 71
           +G  G LV+      WKVT    +S++ A  V++GLWM+C   + G   C+ + ++  + 
Sbjct: 16  LGWLGTLVSCALPL-WKVTAFIGNSIVVAQVVWEGLWMSCVVQSTGQMQCKVYDSLLALP 74

Query: 72  GYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFILSGLCSMT 131
             +QA R L + A+ L   G + A+ G +CT     + AKA+I   AG++ +L+G+  + 
Sbjct: 75  QDLQAARALCVIALLLALLGLLVAITGAQCTTCVEDEGAKARIVLTAGVILLLAGILVLI 134

Query: 132 GCSLYANKITTEFFDPLFVEQ-KYELGAALFIGWAGASLCIIGGVIFC 178
                A+ I  +F++PL  E  K ELGA+L++GWA A+L ++GG + C
Sbjct: 135 PVCWTAHAIIQDFYNPLVAEALKRELGASLYLGWAAAALLMLGGGLLC 182


>gi|47716519 claudin 20 [Homo sapiens]
          Length = 219

 Score =  107 bits (268), Expect = 6e-24
 Identities = 61/187 (32%), Positives = 92/187 (49%), Gaps = 2/187 (1%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRP 63
           Q+ A +  + G   ++ AT    WKV     S++ITA     GLWM+C   + G F C  
Sbjct: 7   QLLAFILALSGVSGVLTATLLPNWKVNVDVDSNIITAIVQLHGLWMDCTWYSTGMFSCAL 66

Query: 64  HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 123
             +I  +  ++QA R  M+ A  L   G   +  GMKCT++GG  + K+  +   G+ F+
Sbjct: 67  KHSILSLPIHVQAARATMVLACVLSALGICTSTVGMKCTRLGGDRETKSHASFAGGVCFM 126

Query: 124 LSGLCSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSIS 182
            +G+ S+     Y  +I   F D    E  K+E G A++IG+  A L  I G+IFC S  
Sbjct: 127 SAGISSLISTVWYTKEIIANFLDLTVPESNKHEPGGAIYIGFISAMLLFISGMIFCTSCI 186

Query: 183 DNNKTPR 189
             N   R
Sbjct: 187 KRNPEAR 193


>gi|9966781 claudin 2 [Homo sapiens]
          Length = 230

 Score =  103 bits (257), Expect = 1e-22
 Identities = 59/224 (26%), Positives = 106/224 (47%), Gaps = 2/224 (0%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTRA-SSVITATWVYQGLWMNCAGNALGSFHCRP 63
           Q+   + G+ G    + A     WK ++   +S++TA    +GLWM CA ++ G   C  
Sbjct: 7   QLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAVGFSKGLWMECATHSTGITQCDI 66

Query: 64  HFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGSDKAKAKIACLAGIVFI 123
           + T+  +   IQA + +M+ + ++     I ++ GM+CT      +AK ++A   G+ FI
Sbjct: 67  YSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGMRCTVFCQESRAKDRVAVAGGVFFI 126

Query: 124 LSGLCSMTGCSLYANKITTEFFDPLFVE-QKYELGAALFIGWAGASLCIIGGVIFCFSIS 182
           L GL      +   + I  +F+ PL  +  K+E+G AL++G   +   +I G+I CFS S
Sbjct: 127 LGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEIGEALYLGIISSLFSLIAGIILCFSCS 186

Query: 183 DNNKTPRYTYNGATSVMSSRTKYHGGEDFKTTNPSKQFDKNAYV 226
                  Y        +++R+    G+  K  +    +    YV
Sbjct: 187 SQRNRSNYYDAYQAQPLATRSSPRPGQPPKVKSEFNSYSLTGYV 230


>gi|10938016 claudin 11 [Homo sapiens]
          Length = 207

 Score = 88.2 bits (217), Expect = 5e-18
 Identities = 61/183 (33%), Positives = 94/183 (51%), Gaps = 21/183 (11%)

Query: 5   QIWALVSGVGGFGALVAATTSNEWKVTTRASSVITATWVYQ----GLWMNCAGNALGSFH 60
           Q+   V+   G+  ++  T++N+W VT    ++ T   + +    GLW +C   A G +H
Sbjct: 7   QVVGFVTSFVGWIGVIVTTSTNDWVVTC-GYTIPTCRKLDELGSKGLWADCV-MATGLYH 64

Query: 61  CRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVGGS-DKAKAKIACLAG 119
           C+P   I  + GY+QACR LMIAA  LG    +  L  + C ++G     AK + A LAG
Sbjct: 65  CKPLVDILILPGYVQACRALMIAASVLGLPAILLLLTVLPCIRMGQEPGVAKYRRAQLAG 124

Query: 120 IVFILSGLCSMTGCSLY---ANKITTEFFDPLFVEQKYELGAALFIGWAGASLCIIGG-V 175
           ++ IL  LC++     +   A++ TT              G +L+ GW GA LC++GG V
Sbjct: 125 VLLILLALCALVATIWFPVCAHRETT----------IVSFGYSLYAGWIGAVLCLVGGCV 174

Query: 176 IFC 178
           I C
Sbjct: 175 ILC 177


>gi|162417973 claudin 22 [Homo sapiens]
          Length = 220

 Score = 72.8 bits (177), Expect = 2e-13
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 46  GLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVG 105
           GLW  C         C+   +   +   ++  R LM  +  LGF G + + FG+ C ++G
Sbjct: 49  GLWQTCVIQEEVGMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIG 108

Query: 106 GSDK-AKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALF 161
            S +  K ++  L GI+   SG+ ++   S  A+K   EF+D   P FV  ++E G ALF
Sbjct: 109 ESQRDLKRRLLILGGILSWASGVTALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALF 167

Query: 162 IGW-AGASLCIIGGVIFCFSISDN 184
           +GW AG SL + G ++ C + S +
Sbjct: 168 LGWFAGLSLLLGGCLLHCAACSSH 191


>gi|169167239 PREDICTED: claudin-24-like [Homo sapiens]
          Length = 220

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 46  GLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVG 105
           GLW  C         C+   +   +   ++  R LM  +  LGF G + + FG+ C ++G
Sbjct: 49  GLWQTCVIQEEVGMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIG 108

Query: 106 GSDK-AKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALF 161
            S +  K ++  L GI+   SG+ ++   S  A+K   EF+D   P FV  ++E G ALF
Sbjct: 109 ESQRDLKRRLLILGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALF 167

Query: 162 IGW-AGASLCIIGGVIFCFSISDN 184
           +GW AG SL + G ++ C + S +
Sbjct: 168 LGWFAGLSLLLGGCLLNCAACSSH 191


>gi|169166931 PREDICTED: claudin-24-like [Homo sapiens]
          Length = 220

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 46  GLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVG 105
           GLW  C         C+   +   +   ++  R LM  +  LGF G + + FG+ C ++G
Sbjct: 49  GLWQTCVIQEEVGMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIG 108

Query: 106 GSDK-AKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALF 161
            S +  K ++  L GI+   SG+ ++   S  A+K   EF+D   P FV  ++E G ALF
Sbjct: 109 ESQRDLKRRLLILGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALF 167

Query: 162 IGW-AGASLCIIGGVIFCFSISDN 184
           +GW AG SL + G ++ C + S +
Sbjct: 168 LGWFAGLSLLLGGCLLNCAACSSH 191


>gi|169166402 PREDICTED: claudin-24-like [Homo sapiens]
          Length = 220

 Score = 72.4 bits (176), Expect = 3e-13
 Identities = 46/144 (31%), Positives = 74/144 (51%), Gaps = 6/144 (4%)

Query: 46  GLWMNCAGNALGSFHCRPHFTIFKVAGYIQACRGLMIAAVSLGFFGSIFALFGMKCTKVG 105
           GLW  C         C+   +   +   ++  R LM  +  LGF G + + FG+ C ++G
Sbjct: 49  GLWQTCVIQEEVGMQCKDFDSFLALPAELRVSRILMFLSNGLGFLGLLVSGFGLDCLRIG 108

Query: 106 GSDK-AKAKIACLAGIVFILSGLCSMTGCSLYANKITTEFFD---PLFVEQKYELGAALF 161
            S +  K ++  L GI+   SG+ ++   S  A+K   EF+D   P FV  ++E G ALF
Sbjct: 109 ESQRDLKRRLLILGGILSWASGITALVPVSWVAHKTVQEFWDENVPDFV-PRWEFGEALF 167

Query: 162 IGW-AGASLCIIGGVIFCFSISDN 184
           +GW AG SL + G ++ C + S +
Sbjct: 168 LGWFAGLSLLLGGCLLNCAACSSH 191


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.136    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,857,752
Number of Sequences: 37866
Number of extensions: 296182
Number of successful extensions: 933
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 78
length of query: 226
length of database: 18,247,518
effective HSP length: 99
effective length of query: 127
effective length of database: 14,498,784
effective search space: 1841345568
effective search space used: 1841345568
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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