Search of human proteins with 33457346

Search of human proteins with 33457346

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|33457346 hypothetical protein LOC57184 [Homo sapiens]
         (198 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|33457346 hypothetical protein LOC57184 [Homo sapiens]              403   e-113
gi|22218621 hypothetical protein LOC203259 [Homo sapiens]             119   1e-27
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]        37   0.008
gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]            35   0.032
gi|195976782 Paf1/RNA polymerase II complex component [Homo sapi...    34   0.071
gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1 precu...    34   0.093
gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2 pre...    34   0.093
gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]        33   0.16 
gi|239757533 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]        33   0.21 
gi|239752049 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]        33   0.21 
gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]        33   0.21 
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]     32   0.27 
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]         32   0.27 
gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]             32   0.35 
gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo ...    32   0.35 
gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo ...    32   0.35 
gi|31324577 molecule interacting with Rab13 [Homo sapiens]             32   0.35 
gi|156071470 hyperpolarization activated cyclic nucleotide-gated...    32   0.46 
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [...    32   0.46 
gi|203096856 kinesin family member 7 [Homo sapiens]                    32   0.46 
gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]                 31   0.60 
gi|33598929 scavenger receptor class F, member 1 isoform 1 precu...    31   0.79 
gi|145309306 scavenger receptor class F, member 1 isoform 5 prec...    31   0.79 
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [...    31   0.79 
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    31   0.79 
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    31   0.79 
gi|239749936 PREDICTED: similar to single Ig IL-1R-related molec...    31   0.79 
gi|46409340 ankyrin repeat domain 13 family, member D [Homo sapi...    31   0.79 
gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]           30   1.0  
gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]           30   1.0  

>gi|33457346 hypothetical protein LOC57184 [Homo sapiens]
          Length = 198

 Score =  403 bits (1035), Expect = e-113
 Identities = 198/198 (100%), Positives = 198/198 (100%)

Query: 1   MATAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYM 60
           MATAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYM
Sbjct: 1   MATAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYM 60

Query: 61  VTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENL 120
           VTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENL
Sbjct: 61  VTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENL 120

Query: 121 VSLDSDSDGELGSRYSSGYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPMASS 180
           VSLDSDSDGELGSRYSSGYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPMASS
Sbjct: 121 VSLDSDSDGELGSRYSSGYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPMASS 180

Query: 181 TCSCCWCCLGDSSSCTLQ 198
           TCSCCWCCLGDSSSCTLQ
Sbjct: 181 TCSCCWCCLGDSSSCTLQ 198


>gi|22218621 hypothetical protein LOC203259 [Homo sapiens]
          Length = 168

 Score =  119 bits (299), Expect = 1e-27
 Identities = 71/138 (51%), Positives = 93/138 (67%), Gaps = 11/138 (7%)

Query: 69  AKLQKHRDLAKAVLRRKGMLGASPNRPDSSGK-----RSVKFNKGYTALSQSPDEN-LVS 122
           A+ +K R+LA+    + G +G+  N+           R V  NKGY++L QSPDE  LV+
Sbjct: 34  AREEKQRELARKGSLKNGSMGSPVNQQPKKNNVMARTRLVVPNKGYSSLDQSPDEKPLVA 93

Query: 123 LDSDSDGELG-SRYSS-GYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPMASS 180
           LD+DSD +   SRYSS GYSSAEQ+NQD++ QLL+DGY LDEIPDDEDLDLIPPK + + 
Sbjct: 94  LDTDSDDDFDMSRYSSSGYSSAEQINQDLNIQLLKDGYRLDEIPDDEDLDLIPPKSV-NP 152

Query: 181 TCSCCWCCLGDSSSCTLQ 198
           TC CC      S++C +Q
Sbjct: 153 TCMCCQAT--SSTACHIQ 168


>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
          Length = 2752

 Score = 37.4 bits (85), Expect = 0.008
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 5/141 (3%)

Query: 3   TAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPA--AVEKRGPYM 60
           T  P  R  R  +P  R   +R R P   G    +   R  R   RTPA  +   R    
Sbjct: 627 TRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRSRSRTP 686

Query: 61  VTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENL 120
             R  S     ++ R  +++++RR      +P R   SG  S + NK  T+  +S   + 
Sbjct: 687 ARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSS 746

Query: 121 VSLDSDSDGELGSRYSSGYSS 141
             +       + SR S   SS
Sbjct: 747 PEM---KKSRISSRRSRSLSS 764


>gi|239748777 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 350

 Score = 35.4 bits (80), Expect = 0.032
 Identities = 25/54 (46%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 6   PSGRALRLSTPGPR--PSGARDRAPGAAGPPSGQIGNRALRLGE---RTPAAVE 54
           P  R    S PG R  P  AR R PG AGPP G    RA R G+   R+PA  E
Sbjct: 155 PGTRPRAKSRPGCRSSPFPARSRTPGEAGPPRGDPRPRAPRPGDHPRRSPALRE 208


>gi|195976782 Paf1/RNA polymerase II complex component [Homo
           sapiens]
          Length = 710

 Score = 34.3 bits (77), Expect = 0.071
 Identities = 28/87 (32%), Positives = 41/87 (47%), Gaps = 14/87 (16%)

Query: 82  LRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELGSRYSSGYSS 141
           + +KG +    N+  SSG      +K  +A S +P+E  VS DSDS+    S  S   S 
Sbjct: 120 IEKKGTMKKQANKTASSGSS----DKDSSAESSAPEEGEVS-DSDSNSSSSSSDSDSSSE 174

Query: 142 AEQVNQDVSRQLLQDGYHLDEIPDDED 168
            E+ +         DGY  D + D+ED
Sbjct: 175 DEEFH---------DGYGEDLMGDEED 192


>gi|4758172 dentin matrix acidic phosphoprotein 1 isoform 1
           precursor [Homo sapiens]
          Length = 513

 Score = 33.9 bits (76), Expect = 0.093
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 91  SPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELGSRYSSGYSSAEQVNQD-- 148
           SP  P+     S +  + +++ ++S  E   S + DSD +  SR     +S E  +    
Sbjct: 418 SPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRSKEDSNSTESKSSSEE 477

Query: 149 ---------VSRQLLQDGYHLDEIPDDEDLD 170
                     SR+L  D YH   I D +D D
Sbjct: 478 DGQLKNIEIESRKLTVDAYHNKPIGDQDDND 508


>gi|121256621 dentin matrix acidic phosphoprotein 1 isoform 2
           precursor [Homo sapiens]
          Length = 497

 Score = 33.9 bits (76), Expect = 0.093
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 91  SPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELGSRYSSGYSSAEQVNQD-- 148
           SP  P+     S +  + +++ ++S  E   S + DSD +  SR     +S E  +    
Sbjct: 402 SPESPEDENSSSQEGLQSHSSSAESQSEESHSEEDDSDSQDSSRSKEDSNSTESKSSSEE 461

Query: 149 ---------VSRQLLQDGYHLDEIPDDEDLD 170
                     SR+L  D YH   I D +D D
Sbjct: 462 DGQLKNIEIESRKLTVDAYHNKPIGDQDDND 492


>gi|119392094 immunoglobulin mu binding protein 2 [Homo sapiens]
          Length = 993

 Score = 33.1 bits (74), Expect = 0.16
 Identities = 43/171 (25%), Positives = 69/171 (40%), Gaps = 21/171 (12%)

Query: 2   ATAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPAAV-----EKR 56
           ++ E   R + +S   PRP  A        GPP+G  G   L+    TPA       E+R
Sbjct: 771 SSGEGKRRFITVSKRAPRPRAA-------LGPPAGTGGPAPLQPVPPTPAQTEQPPREQR 823

Query: 57  GPYMVTRAPSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSP 116
           GP           +LQ+ R        ++         P+   K++    KG+ A     
Sbjct: 824 GPDQPDLRTLHLERLQRVRSAQGQPASKEQQASGQQKLPEKKKKKA----KGHPATDLPT 879

Query: 117 DEN---LVSLDSDSDGELG-SRYSSGYSSAEQVNQDVSRQLLQDGYHLDEI 163
           +E+   LVS    +D   G ++ ++G ++  Q  Q  SR+     +HL EI
Sbjct: 880 EEDFEALVSAAVKADNTCGFAKCTAGVTTLGQFCQLCSRRYCL-SHHLPEI 929


>gi|239757533 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
          Length = 337

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 19/40 (47%), Positives = 21/40 (52%)

Query: 4  AEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRAL 43
          A P+G A RL     R SGAR  A G  GP  G   +RAL
Sbjct: 14 AGPTGGASRLHPNAGRRSGARAGAQGCGGPRVGSADSRAL 53


>gi|239752049 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
          Length = 337

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 19/40 (47%), Positives = 21/40 (52%)

Query: 4  AEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRAL 43
          A P+G A RL     R SGAR  A G  GP  G   +RAL
Sbjct: 14 AGPTGGASRLHPNAGRRSGARAGAQGCGGPRVGSADSRAL 53


>gi|239746532 PREDICTED: ankyrin repeat domain 60 [Homo sapiens]
          Length = 345

 Score = 32.7 bits (73), Expect = 0.21
 Identities = 19/40 (47%), Positives = 21/40 (52%)

Query: 4  AEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRAL 43
          A P+G A RL     R SGAR  A G  GP  G   +RAL
Sbjct: 22 AGPTGGASRLHPNAGRRSGARAGAQGCGGPRVGSADSRAL 61


>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
          Length = 3664

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 38/180 (21%), Positives = 69/180 (38%), Gaps = 25/180 (13%)

Query: 24   RDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVLR 83
            R +   A G P G+ G    ++    P A  + GP +  +  S++ K  +    ++    
Sbjct: 1985 RSQKTAAGGGPQGKKGKNEPKVDATRPEATTEVGPQIGVKESSMEPKAAEEEAGSEQKRD 2044

Query: 84   RKGMLGASPNRPDS----------SGKRSVKFNKGYTALSQSPDENLVSLDS-------- 125
            RK   G   N P++          + +++ K  +G +  S+   +   SL +        
Sbjct: 2045 RKD-AGTDKNPPETAPVEVVEKKPAPEKNSKSKRGRSRNSRLAVDKSASLKNVDAAVSPR 2103

Query: 126  DSDGELGSR------YSSGYSSAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPKPMAS 179
             +  + G R       S   S + Q    +S QL  D    D+ P+ ED+    P P A+
Sbjct: 2104 GAAAQAGERESGVVAVSPEKSESPQKEDGLSSQLKSDPVDPDKEPEKEDVSASGPSPEAT 2163


>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
          Length = 953

 Score = 32.3 bits (72), Expect = 0.27
 Identities = 43/176 (24%), Positives = 70/176 (39%), Gaps = 17/176 (9%)

Query: 15  TPGPRPSGARD--RAPGAAGPPSGQIGNRALRLGERTPA---AVEKRGPYMVTRAPSIQA 69
           +P P PS  R   R  G   PP G+ G ++++     PA   A +   P      P    
Sbjct: 607 SPSPTPSPHRPSIRTKGEPAPPPGKAGEKSVKKPAPPPAPPQATKTTAPVPEPTKPGDPR 666

Query: 70  KLQKHRDLAKAVLRRKGMLGASPNRPDS-SGKRSVKFNKGYTALSQ-----SPDENLVSL 123
           + ++    A+   RR+ + G+      S SG  S   +   +++S      S   +  S+
Sbjct: 667 EARRKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSRSLSVSSVSSVSSATSSSSSAHSV 726

Query: 124 DS-DSDGELGSRYSSGYS---SAEQVNQDVSRQLLQDGYHLDEIPDDEDLDLIPPK 175
           DS D   +L S  SS  S   +  Q  ++  +   +DG  + E     D    PPK
Sbjct: 727 DSEDMYADLASPVSSASSRSPAPAQTRKEKGKSKKEDG--VKEEKRKRDSSTQPPK 780


>gi|239755776 PREDICTED: similar to Mucin-19 [Homo sapiens]
          Length = 1950

 Score = 32.0 bits (71), Expect = 0.35
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 19/139 (13%)

Query: 15   TPGPRPSGARDRAPGAAGPPSGQIGNRAL-RLGERTPAAVEKRGPYMVTRAPSIQA---- 69
            TP   P GA   APG++ P    IGN +  + G+    ++    P  + R P++ A    
Sbjct: 1794 TPVVSP-GATPGAPGSSTPGEADIGNTSFGKSGKSGHDSLTVLNPAFLRRTPTVSAASTT 1852

Query: 70   --KLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSV--KFNKGYTALSQSPDENLVSLDS 125
               + KH D A A      + G+ P  P + G  +   K   G+++   S         S
Sbjct: 1853 SSPVSKHTDAASAT--AVTISGSKPGTPGTPGGATSGGKITSGWSSSGTSTG------SS 1904

Query: 126  DSDGELGSRYSSGYSSAEQ 144
            ++ GE+ S+   G+ +  Q
Sbjct: 1905 NTPGEI-SKALKGHKNGSQ 1922


>gi|239750277 PREDICTED: hypothetical protein XP_002347351 [Homo
            sapiens]
          Length = 2134

 Score = 32.0 bits (71), Expect = 0.35
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 19/139 (13%)

Query: 15   TPGPRPSGARDRAPGAAGPPSGQIGNRAL-RLGERTPAAVEKRGPYMVTRAPSIQA---- 69
            TP   P GA   APG++ P    IGN +  + G+    ++    P  + R P++ A    
Sbjct: 1978 TPVVSP-GATPGAPGSSTPGEADIGNTSFGKSGKSGHDSLTVLNPAFLRRTPTVSAASTT 2036

Query: 70   --KLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSV--KFNKGYTALSQSPDENLVSLDS 125
               + KH D A A      + G+ P  P + G  +   K   G+++   S         S
Sbjct: 2037 SSPVSKHTDAASAT--AVTISGSKPGTPGTPGGATSGGKITSGWSSSGTSTG------SS 2088

Query: 126  DSDGELGSRYSSGYSSAEQ 144
            ++ GE+ S+   G+ +  Q
Sbjct: 2089 NTPGEI-SKALKGHKNGSQ 2106


>gi|239744587 PREDICTED: hypothetical protein XP_002343203 [Homo
            sapiens]
          Length = 2134

 Score = 32.0 bits (71), Expect = 0.35
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 18/130 (13%)

Query: 15   TPGPRPSGARDRAPGAAGPPSGQIGNRAL-RLGERTPAAVEKRGPYMVTRAPSIQA---- 69
            TP   P GA   APG++ P    IGN +  + G+    ++    P  + R P++ A    
Sbjct: 1978 TPVVSP-GATPGAPGSSTPGEADIGNTSFGKSGKSGHDSLTVLNPAFLRRTPTVSAASTT 2036

Query: 70   --KLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSV--KFNKGY------TALSQSPDEN 119
               + KH D A A      + G+ P  P + G  +   K   G+      T  S +P E 
Sbjct: 2037 SSPVSKHTDAASAT--AVTISGSKPGTPGTPGGATSGGKITSGWSSSGTSTGASNTPGEI 2094

Query: 120  LVSLDSDSDG 129
              +L    +G
Sbjct: 2095 SKALKGHKNG 2104


>gi|31324577 molecule interacting with Rab13 [Homo sapiens]
          Length = 863

 Score = 32.0 bits (71), Expect = 0.35
 Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 1/117 (0%)

Query: 5   EPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPA-AVEKRGPYMVTR 63
           EP    +  ++PG  P       P  A P SG      L +G+R+P  +     P +  +
Sbjct: 568 EPRVEQMPQASPGLAPRTRGSSGPQPAKPCSGATPTPLLLVGDRSPVPSPGSSSPQLQVK 627

Query: 64  APSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENL 120
           +   +    +    A +   +K   G+ P RP + G       +   A    P+E++
Sbjct: 628 SSCKENPFNRKPSPAASPATKKATKGSKPVRPPAPGHGFPLIKRKVQADQYIPEEDI 684


>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
           potassium channel 2 [Homo sapiens]
          Length = 889

 Score = 31.6 bits (70), Expect = 0.46
 Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 10/128 (7%)

Query: 7   SGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGE--RTPAAVEKRGPYMVTRA 64
           S R +R   PGP P+ A    P  A PP      RA R       PAA    GP +  R 
Sbjct: 754 SPRLVRRPPPGPAPAAASPGPPPPASPPGAPASPRAPRTSPYGGLPAA-PLAGPALPARR 812

Query: 65  PSIQAKLQKHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLD 124
            S   +  +    ++  L       A+  RP SS    +       A + SPD      D
Sbjct: 813 LS---RASRPLSASQPSLPHGAPGPAASTRPASSSTPRLGPTPAARAAAPSPDRR----D 865

Query: 125 SDSDGELG 132
           S S G  G
Sbjct: 866 SASPGAAG 873


>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
           [Homo sapiens]
          Length = 650

 Score = 31.6 bits (70), Expect = 0.46
 Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 15/162 (9%)

Query: 23  ARDRAPGAAGPPSGQIGNRALRL--------GERTPAAVEKRGPYMVTRAPSIQAKLQKH 74
           +R +  G + P   QIG+  + L        GE   AA     P+  +   +  ++  +H
Sbjct: 56  SRGQYYGGSLPNVNQIGSGTMDLPFQPSGFLGEALAAAPVSLTPFQSSGLDT--SRTTRH 113

Query: 75  RDLAKAVLRRKGMLGASPNRP---DSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGEL 131
             L   V R +G LG+   RP   D  G+++     G   LS   D +    +SDS    
Sbjct: 114 HGLVDRVYRERGRLGSPHRRPLSVDKHGRQADSCPYGTMYLSPPADTSWRRTNSDSALHQ 173

Query: 132 GSRYSSGYSSAEQVNQDV--SRQLLQDGYHLDEIPDDEDLDL 171
            +   +   S    +QDV   R LL     ++E   + D +L
Sbjct: 174 STMTPTQPESFSSGSQDVHQKRVLLLTVPGMEETTSEADKNL 215


>gi|203096856 kinesin family member 7 [Homo sapiens]
          Length = 1343

 Score = 31.6 bits (70), Expect = 0.46
 Identities = 33/147 (22%), Positives = 57/147 (38%), Gaps = 20/147 (13%)

Query: 19  RPSGAR---DRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYMVTRAPSIQ--AKLQK 73
           RP   R   + A GA GPP  +   R +  G R P      GP   + A +++  A+  +
Sbjct: 358 RPEAERPPEETASGARGPPRHRSETRIIHRGRRAP------GPATASAAAAMRLGAECAR 411

Query: 74  HRDLAKAVLRRKGMLGASPNRPDSSGKR------SVKFNKGYTALSQSPDENLVSL---D 124
           +R    A       L A P  P ++ ++      +V+  +   + +  PD  + S    D
Sbjct: 412 YRACTDAAYSLLRELQAEPGLPGAAARKVRDWLCAVEGERSALSSASGPDSGIESASVED 471

Query: 125 SDSDGELGSRYSSGYSSAEQVNQDVSR 151
             + G  G +   G      +   V+R
Sbjct: 472 QAAQGAGGRKEDEGAQQLLTLQNQVAR 498


>gi|13994335 Mix-like homeobox protein 1 [Homo sapiens]
          Length = 232

 Score = 31.2 bits (69), Expect = 0.60
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 5/56 (8%)

Query: 6  PSGRALRLSTP--GPRPS---GARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKR 56
          PS  A  L  P  GP P+   G   R PG A PP   +G+ A   G   P+A ++R
Sbjct: 33 PSPAAALLPAPPAGPGPATFAGFLGRDPGPAPPPPASLGSPAPPKGAAAPSASQRR 88


>gi|33598929 scavenger receptor class F, member 1 isoform 1
           precursor [Homo sapiens]
          Length = 830

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 2   ATAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPA 51
           A + P GR    ST GP  + A +  P AA P     G+R   LG RT A
Sbjct: 623 AQSGPEGREAEEST-GPEEAEAPESFPAAASPGDSATGHRRPPLGGRTVA 671


>gi|145309306 scavenger receptor class F, member 1 isoform 5
           precursor [Homo sapiens]
          Length = 744

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 1/50 (2%)

Query: 2   ATAEPSGRALRLSTPGPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPA 51
           A + P GR    ST GP  + A +  P AA P     G+R   LG RT A
Sbjct: 537 AQSGPEGREAEEST-GPEEAEAPESFPAAASPGDSATGHRRPPLGGRTVA 585


>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
           [Homo sapiens]
          Length = 634

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 39/154 (25%), Positives = 59/154 (38%), Gaps = 15/154 (9%)

Query: 23  ARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRDLAKAVL 82
           +R +  G + P   QIG+  + L  +TP           TR          H  L   V 
Sbjct: 56  SRGQYYGGSLPNVNQIGSGTMDLPFQTPFQSSGLDTSRTTR----------HHGLVDRVY 105

Query: 83  RRKGMLGASPNRP---DSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELGSRYSSGY 139
           R +G LG+   RP   D  G+++     G   LS   D +    +SDS     +   +  
Sbjct: 106 RERGRLGSPHRRPLSVDKHGRQADSCPYGTMYLSPPADTSWRRTNSDSALHQSTMTPTQP 165

Query: 140 SSAEQVNQDV--SRQLLQDGYHLDEIPDDEDLDL 171
            S    +QDV   R LL     ++E   + D +L
Sbjct: 166 ESFSSGSQDVHQKRVLLLTVPGMEETTSEADKNL 199


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 16/131 (12%)

Query: 17   GPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRD 76
            GP     R+ +PGA GPP G+ G   ++       AV   G      +P       K  D
Sbjct: 1029 GPAGEPGREGSPGADGPP-GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD 1087

Query: 77   LAKAVLR----------RKGMLGASPNRPDSS-----GKRSVKFNKGYTALSQSPDENLV 121
              +A  +           +G+ G    R D       G+R +K ++G+T L   P     
Sbjct: 1088 RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGP 1147

Query: 122  SLDSDSDGELG 132
            S D  + G  G
Sbjct: 1148 SGDQGASGPAG 1158


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 16/131 (12%)

Query: 17   GPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYMVTRAPSIQAKLQKHRD 76
            GP     R+ +PGA GPP G+ G   ++       AV   G      +P       K  D
Sbjct: 960  GPAGEPGREGSPGADGPP-GRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGD 1018

Query: 77   LAKAVLR----------RKGMLGASPNRPDSS-----GKRSVKFNKGYTALSQSPDENLV 121
              +A  +           +G+ G    R D       G+R +K ++G+T L   P     
Sbjct: 1019 RGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKGHRGFTGLQGLPGPPGP 1078

Query: 122  SLDSDSDGELG 132
            S D  + G  G
Sbjct: 1079 SGDQGASGPAG 1089


>gi|239749936 PREDICTED: similar to single Ig IL-1R-related molecule
           [Homo sapiens]
          Length = 304

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 17  GPRPSGARDRAPGAAGPPSGQIGNRALRLGERTPAAVEKRGPYMVTRAPS 66
           GPRP   R R PG++   S  +G RA R     P     R    V+  PS
Sbjct: 58  GPRP--VRQRLPGSSAASSASLGRRAGRWAAPPPPGASPRSWQQVSGEPS 105


>gi|46409340 ankyrin repeat domain 13 family, member D [Homo
           sapiens]
          Length = 518

 Score = 30.8 bits (68), Expect = 0.79
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 10  ALRLSTPGPRPSGARDRAPGAAGPPSGQIGNR-ALRLGERTPAAVEKRG 57
           +L+LST  PR  G+  R P A GPPS +   R AL L  R     E+RG
Sbjct: 453 SLQLSTE-PRGPGSPPRTPPAPGPPSFEEQLRLALELSSREQEERERRG 500


>gi|94536805 splicing factor YT521-B isoform 2 [Homo sapiens]
          Length = 709

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 73  KHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELG 132
           K++     V +R     A    PD S +  ++ ++  +  SQS  E + S +  SD E G
Sbjct: 127 KNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETG 186

Query: 133 SRYSSGY--SSAEQVNQDVSRQLLQDGYHLDEIPDDEDLD 170
           S  SS    ++ E   + V   + +D    ++  +DE++D
Sbjct: 187 SSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVD 226


>gi|72534750 splicing factor YT521-B isoform 1 [Homo sapiens]
          Length = 727

 Score = 30.4 bits (67), Expect = 1.0
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 73  KHRDLAKAVLRRKGMLGASPNRPDSSGKRSVKFNKGYTALSQSPDENLVSLDSDSDGELG 132
           K++     V +R     A    PD S +  ++ ++  +  SQS  E + S +  SD E G
Sbjct: 127 KNQPEKTCVRKRDPERRAKSPTPDGSERIGLEVDRRASRSSQSSKEEVNSEEYGSDHETG 186

Query: 133 SRYSSGY--SSAEQVNQDVSRQLLQDGYHLDEIPDDEDLD 170
           S  SS    ++ E   + V   + +D    ++  +DE++D
Sbjct: 187 SSGSSDEQGNNTENEEEGVEEDVEEDEEVEEDAEEDEEVD 226


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.312    0.130    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,158,160
Number of Sequences: 37866
Number of extensions: 477200
Number of successful extensions: 2491
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 99
Number of HSP's that attempted gapping in prelim test: 2376
Number of HSP's gapped (non-prelim): 214
length of query: 198
length of database: 18,247,518
effective HSP length: 97
effective length of query: 101
effective length of database: 14,574,516
effective search space: 1472026116
effective search space used: 1472026116
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.