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Search of human proteins with 33359686
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33359686 ephrin A4 isoform b [Homo sapiens]
(207 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33359686 ephrin A4 isoform b [Homo sapiens] 438 e-123
gi|100913200 ephrin A4 isoform c [Homo sapiens] 339 1e-93
gi|4885197 ephrin A4 isoform a [Homo sapiens] 337 3e-93
gi|4503487 ephrin-A5 [Homo sapiens] 140 1e-33
gi|4826708 ephrin A3 [Homo sapiens] 139 2e-33
gi|27894381 ephrin-A2 precursor [Homo sapiens] 127 9e-30
gi|33359682 ephrin A1 isoform a precursor [Homo sapiens] 125 3e-29
gi|33359680 ephrin A1 isoform b precursor [Homo sapiens] 111 5e-25
gi|4503489 ephrin-B3 precursor [Homo sapiens] 68 5e-12
gi|4758250 ephrin B2 [Homo sapiens] 59 4e-09
gi|4758248 ephrin-B1 precursor [Homo sapiens] 54 1e-07
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 31 0.65
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 31 0.65
gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo ... 31 0.85
gi|31543106 basal cell adhesion molecule isoform 1 precursor [Ho... 31 0.85
gi|30425394 hypothetical protein LOC128876 [Homo sapiens] 30 1.4
gi|42476193 transmembrane protein 66 [Homo sapiens] 30 1.9
gi|111185957 downstream of tyrosine kinase 7 [Homo sapiens] 29 2.5
gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo... 29 2.5
gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo... 29 2.5
gi|22749199 fragile X mental retardation 1 neighbor [Homo sapiens] 29 2.5
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 28 5.5
gi|157671949 rearranged L-myc fusion [Homo sapiens] 28 7.2
gi|169162422 PREDICTED: hypothetical protein [Homo sapiens] 27 9.4
gi|169161962 PREDICTED: hypothetical protein [Homo sapiens] 27 9.4
gi|169162723 PREDICTED: hypothetical protein [Homo sapiens] 27 9.4
>gi|33359686 ephrin A4 isoform b [Homo sapiens]
Length = 207
Score = 438 bits (1127), Expect = e-123
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
Query: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRSPGGGGIPAACTGGANS 180
GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRSPGGGGIPAACTGGANS
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRSPGGGGIPAACTGGANS 180
Query: 181 DRQDGALMGEIRGSEVTLAGACPLITG 207
DRQDGALMGEIRGSEVTLAGACPLITG
Sbjct: 181 DRQDGALMGEIRGSEVTLAGACPLITG 207
>gi|100913200 ephrin A4 isoform c [Homo sapiens]
Length = 193
Score = 339 bits (869), Expect = 1e-93
Identities = 158/165 (95%), Positives = 159/165 (96%)
Query: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
Query: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVLPRSP 165
GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKER P+ P
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERNLPSHPKEP 165
>gi|4885197 ephrin A4 isoform a [Homo sapiens]
Length = 201
Score = 337 bits (865), Expect = 3e-93
Identities = 160/171 (93%), Positives = 162/171 (94%), Gaps = 2/171 (1%)
Query: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH
Sbjct: 1 MRLLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPH 60
Query: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL
Sbjct: 61 YEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSL 120
Query: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVL--PRSPGGGG 169
GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKER++ SPG G
Sbjct: 121 GFEFLPGETYYYISVPTPESSGQCLRLQVSVCCKERKSESAHPVGSPGESG 171
>gi|4503487 ephrin-A5 [Homo sapiens]
Length = 228
Score = 140 bits (352), Expect = 1e-33
Identities = 72/156 (46%), Positives = 98/156 (62%), Gaps = 6/156 (3%)
Query: 1 MRLLPLLRTVLW-AAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCP 59
+ +L L+ VLW F P + R+ VYWNSSNPR RGD +++ +NDYLD+ CP
Sbjct: 4 VEMLTLVFLVLWMCVFSQDPGSKAVADRYAVYWNSSNPRFQRGDYHIDVCINDYLDVFCP 63
Query: 60 HYEGPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCSLPF---GHVQFSEKIQRFT 116
HYE P + E + LYMV++ GY +C + +KRW C+ P G ++FSEK Q FT
Sbjct: 64 HYEDSVPEDKTERYVLYMVNFDGYSACD-HTSKGFKRWECNRPHSPNGPLKFSEKFQLFT 122
Query: 117 PFSLGFEFLPGETYYYISVPTPESSGQ-CLRLQVSV 151
PFSLGFEF PG Y+YIS P++ + CL+L+V V
Sbjct: 123 PFSLGFEFRPGREYFYISSAIPDNGRRSCLKLKVFV 158
>gi|4826708 ephrin A3 [Homo sapiens]
Length = 238
Score = 139 bits (349), Expect = 2e-33
Identities = 75/162 (46%), Positives = 91/162 (56%), Gaps = 13/162 (8%)
Query: 3 LLPLLRTVLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYE 62
LL LL V L G RH VYWNSSN L R V++ +NDYLDI CPHY
Sbjct: 8 LLLLLVPVPLLPLLAQGPGGALGNRHAVYWNSSNQHLRREGYTVQVNVNDYLDIYCPHYN 67
Query: 63 --------GPGPPEGPETFALYMVDWPGYESCQAEGPRAYKRWVCS---LPFGHVQFSEK 111
GPGP G E + LYMV GY +C A + +KRW C+ P ++FSEK
Sbjct: 68 SSGVGPGAGPGPGGGAEQYVLYMVSRNGYRTCNAS--QGFKRWECNRPHAPHSPIKFSEK 125
Query: 112 IQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQVSVCC 153
QR++ FSLG+EF G YYYIS PT +CLR++V VCC
Sbjct: 126 FQRYSAFSLGYEFHAGHEYYYISTPTHNLHWKCLRMKVFVCC 167
>gi|27894381 ephrin-A2 precursor [Homo sapiens]
Length = 213
Score = 127 bits (318), Expect = 9e-30
Identities = 71/139 (51%), Positives = 85/139 (61%), Gaps = 12/139 (8%)
Query: 24 SSLRHVVYWNSSNPRLLRGDA------VVELGLNDYLDIVCPHYEGPGPP-EGPETFALY 76
+S R+ VYWN SNPR G VE+ +NDYLDI CPHY P PP E E + LY
Sbjct: 33 NSDRYAVYWNRSNPRFHAGAGDDGGGYTVEVSINDYLDIYCPHYGAPLPPAERMEHYVLY 92
Query: 77 MVDWPGYESCQAEGPRAYKRWVCSLPF---GHVQFSEKIQRFTPFSLGFEFLPGETYYYI 133
MV+ G+ SC R +KRW C+ P G ++FSEK Q FTPFSLGFEF PG YYYI
Sbjct: 93 MVNGEGHASCDHR-QRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGFEFRPGHEYYYI 151
Query: 134 SVPTPESSGQ-CLRLQVSV 151
S P + + CLRL+V V
Sbjct: 152 SATPPNAVDRPCLRLKVYV 170
>gi|33359682 ephrin A1 isoform a precursor [Homo sapiens]
Length = 205
Score = 125 bits (313), Expect = 3e-29
Identities = 65/148 (43%), Positives = 88/148 (59%), Gaps = 5/148 (3%)
Query: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
Query: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
Query: 127 GETYYYISVPTPESSGQCLRLQVSVCCK 154
G +YYYIS P + +CLRL+V+V K
Sbjct: 123 GHSYYYISKPIHQHEDRCLRLKVTVSGK 150
>gi|33359680 ephrin A1 isoform b precursor [Homo sapiens]
Length = 183
Score = 111 bits (277), Expect = 5e-25
Identities = 57/128 (44%), Positives = 76/128 (59%), Gaps = 5/128 (3%)
Query: 11 LWAAFLGSPLRGGSSLRHVVYWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGP 70
LWA LG ++ RH V+WNSSNP+ D + + LNDY+DI+CPHYE +
Sbjct: 4 LWAPLLGLCCSLAAADRHTVFWNSSNPKFRNEDYTIHVQLNDYVDIICPHYEDHSVADAA 63
Query: 71 -ETFALYMVDWPGYESCQAEGPRAYKRWVCSLP---FGHVQFSEKIQRFTPFSLGFEFLP 126
E + LY+V+ Y+ CQ + + RW C+ P G + SEK QRFTPF+LG EF
Sbjct: 64 MEQYILYLVEHEEYQLCQPQS-KDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGKEFKE 122
Query: 127 GETYYYIS 134
G +YYYIS
Sbjct: 123 GHSYYYIS 130
>gi|4503489 ephrin-B3 precursor [Homo sapiens]
Length = 340
Score = 68.2 bits (165), Expect = 5e-12
Identities = 52/163 (31%), Positives = 72/163 (44%), Gaps = 9/163 (5%)
Query: 30 VYWNSSNPRL-LRGDAVVELGLNDYLDIVCPHYEGPGPPEGP--ETFALYMVDWPGYESC 86
VYWNS+N R G V+ + D LD++CP PGP P E + LY+V C
Sbjct: 33 VYWNSANKRFQAEGGYVLYPQIGDRLDLLCPRARPPGPHSSPNYEFYKLYLVGGAQGRRC 92
Query: 87 QAEGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLR 146
+A P C P ++F+ K Q ++P G EF YY I+ T + + + L
Sbjct: 93 EAP-PAPNLLLTCDRPDLDLRFTIKFQEYSPNLWGHEFRSHHDYYIIA--TSDGTREGLE 149
Query: 147 LQVSVCCKERRARVLPR---SPGGGGIPAACTGGANSDRQDGA 186
C R +VL R SP GG +P +R GA
Sbjct: 150 SLQGGVCLTRGMKVLLRVGQSPRGGAVPRKPVSEMPMERDRGA 192
>gi|4758250 ephrin B2 [Homo sapiens]
Length = 333
Score = 58.5 bits (140), Expect = 4e-09
Identities = 42/133 (31%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Query: 30 VYWNSSNPRLLRGDAVVELG-LNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQA 88
+YWNSSN + L G +V + D LDI+CP + + E + +YMVD + C
Sbjct: 33 IYWNSSNSKFLPGQGLVLYPQIGDKLDIICPKVDSKTVGQY-EYYKVYMVDKDQADRCTI 91
Query: 89 EGPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLRLQ 148
+ C+ P ++F+ K Q F+P G EF + YY IS T S + L Q
Sbjct: 92 KKENT-PLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNKDYYIIS--TSNGSLEGLDNQ 148
Query: 149 VSVCCKERRARVL 161
C+ R ++L
Sbjct: 149 EGGVCQTRAMKIL 161
>gi|4758248 ephrin-B1 precursor [Homo sapiens]
Length = 346
Score = 53.5 bits (127), Expect = 1e-07
Identities = 47/159 (29%), Positives = 71/159 (44%), Gaps = 13/159 (8%)
Query: 6 LLRTVLWAAF-LGSPLRGGSSLRHVVYWNSSNPRLLRGDA-VVELGLNDYLDIVCPHYEG 63
L+ V+WA L +PL + V W+S NP+ L G V+ + D LDI+CP E
Sbjct: 13 LVAMVVWALCRLATPL---AKNLEPVSWSSLNPKFLSGKGLVIYPKIGDKLDIICPRAEA 69
Query: 64 PGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLGF 122
P E + LY+V +C P C+ P ++F+ K Q F+P +G
Sbjct: 70 GRPYE---YYKLYLVRPEQAAACSTVLDPNVLV--TCNRPEQEIRFTIKFQEFSPNYMGL 124
Query: 123 EFLPGETYYYISVPTPESSGQCLRLQVSVCCKERRARVL 161
EF YY S T S + L + C+ R +++
Sbjct: 125 EFKKHHDYYITS--TSNGSLEGLENREGGVCRTRTMKII 161
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 31.2 bits (69), Expect = 0.65
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 63 GPGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLG 121
GPGP GP +++ PG+ S + GP K V ++P F+ I F G
Sbjct: 826 GPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIK--VQNMP-----FTVSIDEILDFFYG 878
Query: 122 FEFLPGET---YYYISVPTPES 140
++ +PG Y +PT E+
Sbjct: 879 YQVIPGSVCLKYNEKGMPTGEA 900
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 31.2 bits (69), Expect = 0.65
Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 63 GPGPPEGPETFALYMVDWPGYESCQAE-GPRAYKRWVCSLPFGHVQFSEKIQRFTPFSLG 121
GPGP GP +++ PG+ S + GP K V ++P F+ I F G
Sbjct: 826 GPGPGPGPGPGPIHIGGPPGFASSSGKPGPTVIK--VQNMP-----FTVSIDEILDFFYG 878
Query: 122 FEFLPGET---YYYISVPTPES 140
++ +PG Y +PT E+
Sbjct: 879 YQVIPGSVCLKYNEKGMPTGEA 900
>gi|239744725 PREDICTED: hypothetical protein XP_002343253 [Homo
sapiens]
Length = 756
Score = 30.8 bits (68), Expect = 0.85
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 139 ESSGQC-LRLQVSVCCKERRARVLPRSPGGGGIPAACTGGANSDRQDGALMG 189
E+SG L LQVS +R+ P S GG P+ C+ G S + GA +G
Sbjct: 451 EASGSLGLALQVSQSALSQRS---PHSAPGGATPSPCSTGPRSHSRSGAELG 499
>gi|31543106 basal cell adhesion molecule isoform 1 precursor [Homo
sapiens]
Length = 628
Score = 30.8 bits (68), Expect = 0.85
Identities = 29/111 (26%), Positives = 39/111 (35%), Gaps = 18/111 (16%)
Query: 85 SCQAEGPRAYKRWVCSLPFGHVQFSEK--IQRFTPFSLGFEFLPGETYYYISVPTPESSG 142
SC+A P KR V Q S+ S+G L +Y
Sbjct: 521 SCEASNPHGNKRHVFHFGTVSPQTSQAGVAVMAVAVSVGLLLLVVAVFY----------- 569
Query: 143 QCLRLQVSVCCKERRARVLPRSPGGGGIPAACTGGANSDRQDGALMGEIRG 193
C+R + CC++RR + P G P G+ Q G LMG G
Sbjct: 570 -CVRRKGGPCCRQRREKGAPPP----GEPGLSHSGSEQPEQTGLLMGGASG 615
>gi|30425394 hypothetical protein LOC128876 [Homo sapiens]
Length = 747
Score = 30.0 bits (66), Expect = 1.4
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 10 VLWAAFLGSPLRGGSSLRHVVYWNSSNPRLLR--------GDAVVELGLNDYLDIVCPHY 61
VL A + PLRG + +W S+P +LR DA++E G YL ++
Sbjct: 9 VLGAQGMAGPLRGRVEELKLPWWRESSPLVLRHSEAARLAADALLERGEAAYLRVISEER 68
Query: 62 EGP 64
E P
Sbjct: 69 ELP 71
>gi|42476193 transmembrane protein 66 [Homo sapiens]
Length = 339
Score = 29.6 bits (65), Expect = 1.9
Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 31 YWNSSNPRLLRGDAVVELGLNDYLDIVCPHYEGPGPPEGPETFALYMVDWPGYESCQAEG 90
Y +S + +LRG +E L DY ++ + G G +F+ Y W +SC G
Sbjct: 117 YESSEDQYVLRGSCGLEYNL-DYTELGLQKLKESGKQHGFASFSDYYYKWSSADSCNMSG 175
>gi|111185957 downstream of tyrosine kinase 7 [Homo sapiens]
Length = 504
Score = 29.3 bits (64), Expect = 2.5
Identities = 15/37 (40%), Positives = 18/37 (48%)
Query: 167 GGGIPAACTGGANSDRQDGALMGEIRGSEVTLAGACP 203
GG A C G R+ G +M +GSE TL G P
Sbjct: 435 GGQTSAGCPSGWLGTRRRGLVMEAPQGSEATLPGPAP 471
>gi|239757409 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 90 GPRAYKRWVCSLPFGHVQF---SEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLR 146
G R Y+ VC + HV + + P + G PG + +P P +S
Sbjct: 248 GERPYECGVCGRTYNHVSSLIRHRRCHKDVPPAAGGPPQPGPHLPPLGLPAPAASAATAA 307
Query: 147 LQVSVCCKERRARVLPR-------SPGGGGIPAACTGGAN 179
+V V P +P G G+P TGG +
Sbjct: 308 APSTVSSGPPATPVAPAPSADGSAAPAGVGVPPPATGGGD 347
Score = 28.1 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 159 RVLPRSPGGGGIPAACTGGANSDRQDGALMGEIRGSEVTLAG 200
R+LP +PGG P +G + D L GE+ + LAG
Sbjct: 725 RLLPPAPGGLQPPDGSSGTDAASVLDNGLAGEVGAAVAALAG 766
>gi|239746371 PREDICTED: similar to zinc finger protein 208 [Homo
sapiens]
Length = 1059
Score = 29.3 bits (64), Expect = 2.5
Identities = 24/100 (24%), Positives = 36/100 (36%), Gaps = 10/100 (10%)
Query: 90 GPRAYKRWVCSLPFGHVQF---SEKIQRFTPFSLGFEFLPGETYYYISVPTPESSGQCLR 146
G R Y+ VC + HV + + P + G PG + +P P +S
Sbjct: 248 GERPYECGVCGRTYNHVSSLIRHRRCHKDVPPAAGGPPQPGPHLPPLGLPAPAASAATAA 307
Query: 147 LQVSVCCKERRARVLPR-------SPGGGGIPAACTGGAN 179
+V V P +P G G+P TGG +
Sbjct: 308 APSTVSSGPPATPVAPAPSADGSAAPAGVGVPPPATGGGD 347
Score = 28.1 bits (61), Expect = 5.5
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 159 RVLPRSPGGGGIPAACTGGANSDRQDGALMGEIRGSEVTLAG 200
R+LP +PGG P +G + D L GE+ + LAG
Sbjct: 725 RLLPPAPGGLQPPDGSSGTDAASVLDNGLAGEVGAAVAALAG 766
>gi|22749199 fragile X mental retardation 1 neighbor [Homo sapiens]
Length = 255
Score = 29.3 bits (64), Expect = 2.5
Identities = 22/74 (29%), Positives = 35/74 (47%), Gaps = 9/74 (12%)
Query: 81 PGYESCQAEGP----RAYKRWVCSLPFGHVQFSEKIQRFTPFSLGFEFLPGETYYYIS-- 134
PGYE+ A+ P R + S PFG + S I F + L + G +Y+ ++
Sbjct: 43 PGYEAAMADRPQPGWRESLKMRVSKPFGMLMLSIWILLFVCYYLSYYLCSGSSYFVLANG 102
Query: 135 --VPTPESS-GQCL 145
+P E++ GQ L
Sbjct: 103 HILPNSENAHGQSL 116
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 28.1 bits (61), Expect = 5.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 63 GPGPPEGPETFALYMVDWPGYESCQAEGPRAY 94
GPGPP GP + A V PG A GPR +
Sbjct: 641 GPGPPPGPLSKAPQPVP-PGVGELPARGPRLF 671
>gi|157671949 rearranged L-myc fusion [Homo sapiens]
Length = 1914
Score = 27.7 bits (60), Expect = 7.2
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 138 PESSGQCLRLQVSVCCKERRARVLPRSPGGGGIPAACTGGANSDRQDGALMGEIRGSEV 196
P + C++ + + C+ R SPG P T +S +DG G I S V
Sbjct: 1603 PSEADPCIKKEENRSCESERTEH-SHSPGDSSAPIQNTDCCHSSERDGGQKGCIESSSV 1660
>gi|169162422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 249
Score = 27.3 bits (59), Expect = 9.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 150 SVCCKERRARVLPRSPG-----GGGIPAACTGGANSDRQDGALMG----EIRGSEVTLAG 200
S C R R+ RSP G G AC G +S ++ G L+G + + L
Sbjct: 107 SAACAGHRRRLTRRSPRPRKSRGRGAANACLPGKSSHQERGVLVGCPSPALSARDALLRS 166
Query: 201 ACPL 204
+C L
Sbjct: 167 SCEL 170
>gi|169161962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 258
Score = 27.3 bits (59), Expect = 9.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 150 SVCCKERRARVLPRSPG-----GGGIPAACTGGANSDRQDGALMG----EIRGSEVTLAG 200
S C R R+ RSP G G AC G +S ++ G L+G + + L
Sbjct: 116 SAACAGHRRRLTRRSPRPRKSRGRGAANACLPGKSSHQERGVLVGCPSPALSARDALLRS 175
Query: 201 ACPL 204
+C L
Sbjct: 176 SCEL 179
>gi|169162723 PREDICTED: hypothetical protein [Homo sapiens]
Length = 258
Score = 27.3 bits (59), Expect = 9.4
Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 150 SVCCKERRARVLPRSPG-----GGGIPAACTGGANSDRQDGALMG----EIRGSEVTLAG 200
S C R R+ RSP G G AC G +S ++ G L+G + + L
Sbjct: 116 SAACAGHRRRLTRRSPRPRKSRGRGAANACLPGKSSHQERGVLVGCPSPALSARDALLRS 175
Query: 201 ACPL 204
+C L
Sbjct: 176 SCEL 179
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.141 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,310,241
Number of Sequences: 37866
Number of extensions: 561069
Number of successful extensions: 1316
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1283
Number of HSP's gapped (non-prelim): 28
length of query: 207
length of database: 18,247,518
effective HSP length: 98
effective length of query: 109
effective length of database: 14,536,650
effective search space: 1584494850
effective search space used: 1584494850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.