Guide to the Human Genome
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Name: RLF Sequence: fasta or formatted (1914aa) NCBI GI: 157671949
Description:

rearranged L-myc fusion

Referenced in:

Myc and Related Functions

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         88           3
 C cysteine            4.6         89           2
 D aspartate           5.4        103           3
 E glutamate           8.6        165           2
 F phenylalanine       3.6         69           2
 G glycine             4.2         80           2
 H histidine           4.8         91           2
 I isoleucine          3.8         72           2
 K lysine              7.9        151           3
 L leucine             9.8        188           3
 M methionine          1.6         31           1
 N asparagine          4.5         86           3
 P proline             4.4         84           4
 Q glutamine           5.0         96           2
 R arginine            4.5         86           3
 S serine              9.9        190           3
 T threonine           4.8         91           3
 V valine              4.5         86           3
 W tryptophan          0.5         10           1
 Y tyrosine            3.0         58           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   rearranged L-myc fusion 
ZNF292                0.180   zinc finger protein 292 
ZNF384                0.016   nuclear matrix transcription factor 4 isoform d [Ho...
ZNF654                0.016   zinc finger protein 654 
ZNF33A                0.016   zinc finger protein 33A isoform b 
ZNF33A                0.016   zinc finger protein 33A isoform a 
ZNF33B                0.016   zinc finger protein 33B 
ZNF674                0.016   zinc finger family member 674 isoform 2 
ZNF674                0.016   zinc finger family member 674 isoform 1 
ZNF624                0.016   zinc finger protein 624 
ZNF655                0.015   zinc finger protein 655 isoform f 
ZNF655                0.015   zinc finger protein 655 isoform f 
ZNF655                0.015   zinc finger protein 655 isoform a 
ZNF655                0.015   zinc finger protein 655 isoform a 
ZNF41                 0.015   zinc finger protein 41 
ZNF41                 0.015   zinc finger protein 41 
ZNF680                0.015   zinc finger protein 680 isoform 1 
ZNF23                 0.015   zinc finger protein 23 
LOC388559             0.014   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.014   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.014   PREDICTED: hypothetical protein LOC388559 
ZNF492                0.014   zinc finger protein 492 
ZNF776                0.014   zinc finger protein 776 
ZNF570                0.014   zinc finger protein 570 
ZNF852                0.014   PREDICTED: zinc finger protein 852 
ZNF852                0.014   PREDICTED: zinc finger protein 852 
ZNF852                0.014   PREDICTED: zinc finger protein 852 
ZNF167                0.014   zinc finger protein 167 isoform 1 
ZNF221                0.014   zinc finger protein 221 
ZNF840                0.014   PREDICTED: zinc finger protein 840 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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