Guide to the Human Genome
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Name: LOC284648 Sequence: fasta or formatted (258aa) NCBI GI: 169162723
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt mRNA {258aa} PREDICTED: hypothetical protein
alt prot {249aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.9         28           4
 C cysteine            3.9         10           1
 D aspartate           1.6          4           1
 E glutamate           4.7         12           1
 F phenylalanine       2.7          7           1
 G glycine             7.8         20           2
 H histidine           2.3          6           1
 I isoleucine          2.7          7           2
 K lysine              5.0         13           1
 L leucine            11.2         29           2
 M methionine          1.2          3           1
 N asparagine          1.2          3           1
 P proline             8.9         23           1
 Q glutamine           4.3         11           1
 R arginine            8.5         22           3
 S serine             13.2         34           2
 T threonine           4.7         12           1
 V valine              4.7         12           2
 W tryptophan          0.0          0           0
 Y tyrosine            0.8          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC284648             1.000   PREDICTED: hypothetical protein 
LOC284648             0.781   PREDICTED: hypothetical protein 
LOC100127891          0.031   PREDICTED: hypothetical protein 
CCDC120               0.029   coiled-coil domain containing 120 isoform 3 
CCDC120               0.029   coiled-coil domain containing 120 isoform 4 
CCDC120               0.029   coiled-coil domain containing 120 isoform 2 
CCDC120               0.029   coiled-coil domain containing 120 isoform 1 
LOC643355             0.025   PREDICTED: hypothetical protein 
LOC643355             0.025   PREDICTED: hypothetical protein 
C10orf140             0.025   hypothetical protein LOC387640 
C13orf23              0.023   hypothetical protein LOC80209 isoform 2 
C13orf23              0.023   hypothetical protein LOC80209 isoform 1 
PAWR                  0.018   PRKC, apoptosis, WT1, regulator 
TTC28                 0.016   tetratricopeptide repeat domain 28 
PRR12                 0.016   proline rich 12 
MDC1                  0.016   mediator of DNA-damage checkpoint 1 
LOC100293375          0.016   PREDICTED: hypothetical protein 
BLNK                  0.016   B-cell linker isoform 1 
PKD2                  0.014   polycystin 2 
PRDM2                 0.014   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.014   retinoblastoma protein-binding zinc finger protein i...
PRDM2                 0.014   retinoblastoma protein-binding zinc finger protein i...
AGRN                  0.014   agrin 
SETD1B                0.014   SET domain containing 1B 
KRTAP4-6              0.014   PREDICTED: keratin associated protein 4.6 
WDR81                 0.012   PREDICTED: WD repeat domain 81 
LOC728800             0.012   PREDICTED: similar to FLJ00402 protein 
LOC728800             0.012   PREDICTED: similar to FLJ00402 protein 
KCTD8                 0.012   potassium channel tetramerisation domain containing ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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