Guide to the Human Genome
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Name: PCGF5 Sequence: fasta or formatted (256aa) NCBI GI: 33300663
Description:

polycomb group ring finger 5

Referenced in:

Ring Finger Proteins
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.6          4           1
 C cysteine            5.5         14           1
 D aspartate           7.4         19           2
 E glutamate           7.8         20           2
 F phenylalanine       3.9         10           1
 G glycine             5.5         14           1
 H histidine           2.3          6           1
 I isoleucine          5.1         13           2
 K lysine              8.2         21           2
 L leucine             9.0         23           1
 M methionine          2.7          7           1
 N asparagine          5.5         14           2
 P proline             4.7         12           1
 Q glutamine           4.7         12           1
 R arginine            5.9         15           1
 S serine              5.1         13           2
 T threonine           5.9         15           2
 V valine              5.1         13           2
 W tryptophan          0.8          2           1
 Y tyrosine            3.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polycomb group ring finger 5 
PCGF3                 0.359   ring finger protein 3 
PCGF6                 0.234   polycomb group ring finger 6 isoform a 
PCGF1                 0.232   polycomb group ring finger 1 
BMI1                  0.218   BMI1 polycomb ring finger oncogene 
PCGF2                 0.216   ring finger protein 110 
PCGF6                 0.125   polycomb group ring finger 6 isoform b 
RNF2                  0.048   ring finger protein 2 
TRIML1                0.044   tripartite motif family-like 1 
HLTF                  0.042   helicase-like transcription factor 
HLTF                  0.042   helicase-like transcription factor 
RING1                 0.042   ring finger protein 1 
LONRF2                0.039   LON peptidase N-terminal domain and ring finger 2 [...
TRIM75                0.039   tripartite motif-containing 75 
BRCA1                 0.037   breast cancer 1, early onset isoform 2 
BRCA1                 0.037   breast cancer 1, early onset isoform 5 
BRCA1                 0.037   breast cancer 1, early onset isoform 4 
BRCA1                 0.037   breast cancer 1, early onset isoform 1 
LOC653192             0.037   PREDICTED: Tripartite motif-containing protein 43-li...
TRIM43                0.037   tripartite motif-containing 43 
RNF8                  0.035   ring finger protein 8 isoform 1 
RNF41                 0.035   ring finger protein 41 isoform 1 
RNF41                 0.035   ring finger protein 41 isoform 1 
RFWD2                 0.035   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.035   ring finger and WD repeat domain 2 isoform d24 [Homo...
LONRF1                0.035   LON peptidase N-terminal domain and ring finger 1 [H...
RNF151                0.035   ring finger protein 151 
SPRYD5                0.033   SPRY domain containing 5 
DTX3                  0.033   deltex homolog 3 
TRIM53                0.033   tripartite motif-containing 53 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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