Guide to the Human Genome
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Name: PCGF6 Sequence: fasta or formatted (275aa) NCBI GI: 37655165
Description:

polycomb group ring finger 6 isoform b

Referenced in:

Ring Finger Proteins
Stem Cells and Early Development

Other entries for this name:
alt prot [350aa] polycomb group ring finger 6 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         20           3
 C cysteine            3.6         10           1
 D aspartate           4.0         11           1
 E glutamate          14.2         39           9
 F phenylalanine       2.9          8           1
 G glycine             8.4         23           2
 H histidine           2.9          8           1
 I isoleucine          5.1         14           2
 K lysine              3.6         10           2
 L leucine             9.8         27           2
 M methionine          1.5          4           1
 N asparagine          1.8          5           1
 P proline             7.6         21           5
 Q glutamine           2.5          7           1
 R arginine            5.8         16           2
 S serine              5.8         16           1
 T threonine           5.1         14           2
 V valine              5.5         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.5          7           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   polycomb group ring finger 6 isoform b 
PCGF6                 0.667   polycomb group ring finger 6 isoform a 
PCGF1                 0.134   polycomb group ring finger 1 
PCGF5                 0.121   polycomb group ring finger 5 
BMI1                  0.119   BMI1 polycomb ring finger oncogene 
PCGF2                 0.119   ring finger protein 110 
PCGF3                 0.119   ring finger protein 3 
PELP1                 0.076   proline, glutamic acid and leucine rich protein 1 [...
BPTF                  0.056   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.056   bromodomain PHD finger transcription factor isoform ...
DAXX                  0.046   death-domain associated protein isoform a 
DAXX                  0.046   death-domain associated protein isoform a 
DAXX                  0.046   death-domain associated protein isoform b 
LOC100289089          0.046   PREDICTED: hypothetical protein XP_002343359 
SCAF1                 0.046   SR-related CTD-associated factor 1 
RFWD2                 0.045   ring finger and WD repeat domain 2 isoform a 
RFWD2                 0.045   ring finger and WD repeat domain 2 isoform d24 [Homo...
PHRF1                 0.043   PHD and ring finger domains 1 
STK11IP               0.043   LKB1 interacting protein 
SETD1A                0.041   SET domain containing 1A 
NCL                   0.041   nucleolin 
CHFR                  0.041   checkpoint with forkhead and ring finger domains is...
CHFR                  0.041   checkpoint with forkhead and ring finger domains is...
CHFR                  0.041   checkpoint with forkhead and ring finger domains is...
RNF8                  0.041   ring finger protein 8 isoform 1 
MYT1                  0.041   myelin transcription factor 1 
ZFHX3                 0.039   AT-binding transcription factor 1 
ZNF526                0.039   zinc finger protein 526 
PXK                   0.039   PX domain containing serine/threonine kinase 
CCDC108               0.037   coiled-coil domain containing 108 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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