Guide to the Human Genome
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Name: PCGF2 Sequence: fasta or formatted (344aa) NCBI GI: 6005964
Description:

ring finger protein 110

Referenced in:

Ring Finger Proteins
Stem Cells and Early Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         23           2
 C cysteine            3.2         11           1
 D aspartate           4.9         17           2
 E glutamate           6.4         22           1
 F phenylalanine       2.0          7           1
 G glycine             6.1         21           2
 H histidine           2.3          8           1
 I isoleucine          3.2         11           1
 K lysine              6.4         22           2
 L leucine             8.7         30           2
 M methionine          2.6          9           1
 N asparagine          3.2         11           1
 P proline             9.6         33           2
 Q glutamine           1.5          5           1
 R arginine            5.8         20           3
 S serine              8.4         29           3
 T threonine           9.0         31           2
 V valine              5.5         19           1
 W tryptophan          0.3          1           1
 Y tyrosine            4.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ring finger protein 110 
BMI1                  0.577   BMI1 polycomb ring finger oncogene 
PCGF1                 0.204   polycomb group ring finger 1 
PCGF3                 0.188   ring finger protein 3 
PCGF6                 0.175   polycomb group ring finger 6 isoform a 
PCGF5                 0.164   polycomb group ring finger 5 
PCGF6                 0.093   polycomb group ring finger 6 isoform b 
LOC100294420          0.044   PREDICTED: similar to mucin 2 
MUC2                  0.039   mucin 2 precursor 
RNF2                  0.038   ring finger protein 2 
RING1                 0.038   ring finger protein 1 
RNF24                 0.036   ring finger protein 24 isoform 2 
RNF24                 0.036   ring finger protein 24 isoform 1 
RNF24                 0.036   ring finger protein 24 isoform 1 
MUC7                  0.035   mucin 7, secreted precursor 
MUC7                  0.035   mucin 7, secreted precursor 
MUC7                  0.035   mucin 7, secreted precursor 
RNF8                  0.035   ring finger protein 8 isoform 1 
DTX3                  0.035   deltex homolog 3 
LONRF1                0.035   LON peptidase N-terminal domain and ring finger 1 [H...
NACA                  0.034   nascent polypeptide-associated complex alpha subuni...
LONRF3                0.034   LON peptidase N-terminal domain and ring finger 3 is...
LONRF3                0.034   LON peptidase N-terminal domain and ring finger 3 is...
MUC21                 0.032   mucin 21 
RAD18                 0.031   postreplication repair protein hRAD18p 
GP1BA                 0.028   platelet glycoprotein Ib alpha polypeptide precurso...
TRIM39                0.028   tripartite motif-containing 39 isoform 2 
TRIM39                0.028   tripartite motif-containing 39 isoform 1 
TNRC18                0.028   trinucleotide repeat containing 18 
TRIM35                0.028   tripartite motif-containing 35 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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