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Search of human proteins with 33300649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33300649 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A3 isoform 1 [Homo sapiens]
(133 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33300649 family with sequence similarity 19 (chemokine (C-C m... 288 7e-79
gi|52486734 family with sequence similarity 19 (chemokine (C-C m... 189 4e-49
gi|32698882 family with sequence similarity 19 (chemokine (C-C m... 179 6e-46
gi|53988383 family with sequence similarity 19 (chemokine (C-C m... 179 6e-46
gi|30425496 family with sequence similarity 19 (chemokine (C-C m... 175 1e-44
gi|50962799 family with sequence similarity 19 (chemokine (C-C m... 162 7e-41
gi|131887988 family with sequence similarity 19 (chemokine (C-C ... 99 8e-22
gi|53933210 family with sequence similarity 19 (chemokine (C-C m... 97 4e-21
gi|40317628 thrombospondin 2 precursor [Homo sapiens] 32 0.11
gi|32698704 tectonin beta-propeller repeat containing 1 [Homo sa... 31 0.33
gi|112420992 crumbs homolog 2 [Homo sapiens] 31 0.33
gi|41327708 crumbs homolog 1 precursor [Homo sapiens] 28 2.2
gi|54873613 agrin [Homo sapiens] 28 2.8
gi|93102379 low density lipoprotein-related protein 1B precursor... 28 2.8
gi|148833508 notch1 preproprotein [Homo sapiens] 27 3.7
gi|116812616 RecQ protein-like 4 [Homo sapiens] 27 3.7
gi|169164915 PREDICTED: similar to hCG1644233 [Homo sapiens] 27 3.7
gi|169163540 PREDICTED: similar to hCG1644233 [Homo sapiens] 27 3.7
gi|126012562 low density lipoprotein-related protein 1 [Homo sap... 27 4.8
gi|116256471 SNF1-like kinase [Homo sapiens] 27 4.8
gi|134031945 SCO-spondin [Homo sapiens] 27 4.8
gi|22749455 ring finger protein 182 [Homo sapiens] 27 4.8
gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3 [Ho... 27 6.3
gi|169171558 PREDICTED: hypothetical protein [Homo sapiens] 27 6.3
gi|239752966 PREDICTED: hypothetical protein [Homo sapiens] 27 6.3
gi|239748163 PREDICTED: similar to mCG127065 [Homo sapiens] 27 6.3
gi|239753596 PREDICTED: similar to mCG127065 [Homo sapiens] 26 8.2
gi|169164961 PREDICTED: similar to mCG127065 [Homo sapiens] 26 8.2
gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens] 26 8.2
gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens] 26 8.2
>gi|33300649 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A3 isoform 1 [Homo sapiens]
Length = 133
Score = 288 bits (738), Expect = 7e-79
Identities = 133/133 (100%), Positives = 133/133 (100%)
Query: 1 MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRI 60
MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRI
Sbjct: 1 MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRI 60
Query: 61 EERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEECKVLPDLSGWSC 120
EERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEECKVLPDLSGWSC
Sbjct: 61 EERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEECKVLPDLSGWSC 120
Query: 121 SSGHKVKTTKVTR 133
SSGHKVKTTKVTR
Sbjct: 121 SSGHKVKTTKVTR 133
>gi|52486734 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A3 isoform 2 [Homo sapiens]
Length = 169
Score = 189 bits (481), Expect = 4e-49
Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 1 MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRI 60
MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRI
Sbjct: 1 MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRI 60
Query: 61 EERSQTVKCSCFSGQVAGTTRAKPSCVD 88
EERSQTVKCSCFSGQVAGTTRAKPSCVD
Sbjct: 61 EERSQTVKCSCFSGQVAGTTRAKPSCVD 88
>gi|32698882 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A4 [Homo sapiens]
Length = 140
Score = 179 bits (454), Expect = 6e-46
Identities = 77/93 (82%), Positives = 87/93 (93%)
Query: 41 VQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQM 100
++QGTCEV+A HRCCN+NRIEERSQTVKCSCF GQVAGTTRA+PSCV+ASIV+Q+WWC M
Sbjct: 48 IKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCHM 107
Query: 101 EPCLPGEECKVLPDLSGWSCSSGHKVKTTKVTR 133
PCL GE+CKVLPD SGWSCSSG+KVKTTKVTR
Sbjct: 108 NPCLEGEDCKVLPDYSGWSCSSGNKVKTTKVTR 140
>gi|53988383 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A4 [Homo sapiens]
Length = 140
Score = 179 bits (454), Expect = 6e-46
Identities = 77/93 (82%), Positives = 87/93 (93%)
Query: 41 VQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQM 100
++QGTCEV+A HRCCN+NRIEERSQTVKCSCF GQVAGTTRA+PSCV+ASIV+Q+WWC M
Sbjct: 48 IKQGTCEVVAVHRCCNKNRIEERSQTVKCSCFPGQVAGTTRAQPSCVEASIVIQKWWCHM 107
Query: 101 EPCLPGEECKVLPDLSGWSCSSGHKVKTTKVTR 133
PCL GE+CKVLPD SGWSCSSG+KVKTTKVTR
Sbjct: 108 NPCLEGEDCKVLPDYSGWSCSSGNKVKTTKVTR 140
>gi|30425496 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A2 [Homo sapiens]
Length = 131
Score = 175 bits (443), Expect = 1e-44
Identities = 83/132 (62%), Positives = 99/132 (75%), Gaps = 2/132 (1%)
Query: 1 MSERVERNWSTGGWLLALCLAWLWTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRI 60
MS+R + + G L+ + + LW + +A V + GTCEV+A HRCCN+N+I
Sbjct: 1 MSKRYLQKATKGKLLIIIFIVTLWGKVVSSANHHKAHHV--KTGTCEVVALHRCCNKNKI 58
Query: 61 EERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEECKVLPDLSGWSC 120
EERSQTVKCSCF GQVAGTTRA PSCVDASIV Q+WWC M+PCL GEECKVLPD GWSC
Sbjct: 59 EERSQTVKCSCFPGQVAGTTRAAPSCVDASIVEQKWWCHMQPCLEGEECKVLPDRKGWSC 118
Query: 121 SSGHKVKTTKVT 132
SSG+KVKTT+VT
Sbjct: 119 SSGNKVKTTRVT 130
>gi|50962799 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A1 [Homo sapiens]
Length = 133
Score = 162 bits (410), Expect = 7e-41
Identities = 68/88 (77%), Positives = 80/88 (90%)
Query: 44 GTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPC 103
GTCEVIAAHRCCN+NRIEERSQTVKCSC G+VAGTTR +PSCVDASIV+ +WWC+MEPC
Sbjct: 42 GTCEVIAAHRCCNKNRIEERSQTVKCSCLPGKVAGTTRNRPSCVDASIVIGKWWCEMEPC 101
Query: 104 LPGEECKVLPDLSGWSCSSGHKVKTTKV 131
L GEECK LPD SGW C++G+K+KTT++
Sbjct: 102 LEGEECKTLPDNSGWMCATGNKIKTTRI 129
>gi|131887988 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A5 isoform 1 [Homo sapiens]
Length = 132
Score = 99.4 bits (246), Expect = 8e-22
Identities = 48/110 (43%), Positives = 69/110 (62%), Gaps = 2/110 (1%)
Query: 24 WTHLTLAALQPPTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAK 83
W + LA+L + L GTCE++ R ++ R QT +C+C GQ+AGTTRA+
Sbjct: 24 WAFMILASLLIAYCSQLAA-GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRAR 82
Query: 84 PSCVDASIVLQRWWCQMEPCLPGEECKVLPDLSGWSCSS-GHKVKTTKVT 132
P+CVDA I+ + WC M PCL GE C +L + SGW+C+ G ++KTT V+
Sbjct: 83 PACVDARIIKTKQWCDMLPCLEGEGCDLLINRSGWTCTQPGGRIKTTTVS 132
>gi|53933210 family with sequence similarity 19 (chemokine (C-C
motif)-like), member A5 isoform 2 [Homo sapiens]
Length = 125
Score = 97.1 bits (240), Expect = 4e-21
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 1/90 (1%)
Query: 44 GTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPC 103
GTCE++ R ++ R QT +C+C GQ+AGTTRA+P+CVDA I+ + WC M PC
Sbjct: 36 GTCEIVTLDRDSSQPRRTIARQTARCACRKGQIAGTTRARPACVDARIIKTKQWCDMLPC 95
Query: 104 LPGEECKVLPDLSGWSCSS-GHKVKTTKVT 132
L GE C +L + SGW+C+ G ++KTT V+
Sbjct: 96 LEGEGCDLLINRSGWTCTQPGGRIKTTTVS 125
>gi|40317628 thrombospondin 2 precursor [Homo sapiens]
Length = 1172
Score = 32.3 bits (72), Expect = 0.11
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 98 CQMEPCLPGEECKVLPDLSGWSCSS 122
C PC PG +C PD WSC S
Sbjct: 553 CLSNPCFPGAQCSSFPD-GSWSCGS 576
>gi|32698704 tectonin beta-propeller repeat containing 1 [Homo
sapiens]
Length = 1165
Score = 30.8 bits (68), Expect = 0.33
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 45 TCEVIAAHRCCNRNRIEERSQTVKCSCFSG-QVAGTTRAKPSCVDASIVLQR 95
T + I A R C+R+ S + CF G +V G+ + PS DAS ++R
Sbjct: 371 TWKAIIAARECDRSHSGSSSSLLSAGCFFGDEVRGSGESAPSDTDASSEVER 422
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 30.8 bits (68), Expect = 0.33
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 94 QRWWCQMEPCLPGEECKVLPDLSGWSC 120
Q+ WC +PCLP C+ +PD G+ C
Sbjct: 844 QQLWCPGQPCLPPATCEEVPD--GFVC 868
Score = 27.7 bits (60), Expect = 2.8
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 11/69 (15%)
Query: 54 CCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEECKVLP 113
C + + E S CSC G +AG P+ C+ PCL G C+
Sbjct: 1144 CLDGSPCEGGSPAANCSCLEG-LAGQRCQVPTLP----------CEANPCLNGGTCRAAG 1192
Query: 114 DLSGWSCSS 122
+S C++
Sbjct: 1193 GVSECICNA 1201
Score = 26.2 bits (56), Expect = 8.2
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 98 CQMEPCLPGEECKVLPDLSGWSC 120
C +PC PG EC+ + G++C
Sbjct: 42 CASDPCAPGTECQA-TESGGYTC 63
>gi|41327708 crumbs homolog 1 precursor [Homo sapiens]
Length = 1406
Score = 28.1 bits (61), Expect = 2.2
Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 14/67 (20%)
Query: 54 CCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEECKVLP 113
C N R CSC P+ + WC PC G +C+ P
Sbjct: 896 CHNGGVCHSRWDDFSCSC------------PALTSGKACEEVQWCGFSPCPHGAQCQ--P 941
Query: 114 DLSGWSC 120
L G+ C
Sbjct: 942 VLQGFEC 948
>gi|54873613 agrin [Homo sapiens]
Length = 2045
Score = 27.7 bits (60), Expect = 2.8
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 11/46 (23%)
Query: 69 CSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEECKVLPD 114
C C G+V P+C D ++ CQ PC C+VLP+
Sbjct: 1574 CQCPPGRVG------PTCAD-----EKSPCQPNPCHGAAPCRVLPE 1608
>gi|93102379 low density lipoprotein-related protein 1B precursor
[Homo sapiens]
Length = 4599
Score = 27.7 bits (60), Expect = 2.8
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 45 TCEVI---AAHRCCNRNRIEERSQTVKCSCFSG 74
TCE++ + H C++ E+ TVKCSC+ G
Sbjct: 1211 TCEIVDYCSNHLKCSQV-CEQHKHTVKCSCYEG 1242
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 27.3 bits (59), Expect = 3.7
Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 11/71 (15%)
Query: 50 AAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPCLPGEEC 109
A++ C N+ + KC+C T +VL C PC G EC
Sbjct: 796 ASNPCLNQGTCIDDVAGYKCNCLLPYTGAT---------CEVVLAP--CAPSPCRNGGEC 844
Query: 110 KVLPDLSGWSC 120
+ D +SC
Sbjct: 845 RQSEDYESFSC 855
>gi|116812616 RecQ protein-like 4 [Homo sapiens]
Length = 1208
Score = 27.3 bits (59), Expect = 3.7
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 85 SCVDASIVLQRWWCQMEPCLPGEECKVLPDLSGWSCSSGHKVKTTKVT 132
+C+D + L +W PC CKVL + G C G T+ T
Sbjct: 602 ACIDEAHCLSQWSHNFRPCYL-RVCKVLRERMGVHCFLGLTATATRRT 648
>gi|169164915 PREDICTED: similar to hCG1644233 [Homo sapiens]
Length = 195
Score = 27.3 bits (59), Expect = 3.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 103 CLPGEECKVLPDLSGWSCSSG 123
C+ G C LP GW+C G
Sbjct: 108 CMLGSFCACLPSFYGWNCEHG 128
>gi|169163540 PREDICTED: similar to hCG1644233 [Homo sapiens]
Length = 195
Score = 27.3 bits (59), Expect = 3.7
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 103 CLPGEECKVLPDLSGWSCSSG 123
C+ G C LP GW+C G
Sbjct: 108 CMLGSFCACLPSFYGWNCEHG 128
>gi|126012562 low density lipoprotein-related protein 1 [Homo sapiens]
Length = 4544
Score = 26.9 bits (58), Expect = 4.8
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 38 TVLVQQGTCEVIAAHRCCNRNRI-EERSQTVKCSCFSGQVA-------GTTRAKPSCVDA 89
T + CEV RC + ++S V C+C G+VA G SC
Sbjct: 4331 TAYFEGSRCEVNKCSRCLEGACVVNKQSGDVTCNCTDGRVAPSCLTCVGHCSNGGSCTMN 4390
Query: 90 SIVLQRWWCQMEPCLPGEECK 110
S ++ CQ P + G C+
Sbjct: 4391 SKMMPE--CQCPPHMTGPRCE 4409
>gi|116256471 SNF1-like kinase [Homo sapiens]
Length = 783
Score = 26.9 bits (58), Expect = 4.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 92 VLQRWWCQMEPCLPGEEC 109
+ Q W + EPCLPG C
Sbjct: 272 IRQHRWMRAEPCLPGPAC 289
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 26.9 bits (58), Expect = 4.8
Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 25/87 (28%)
Query: 40 LVQQGTCEVIAAHRC----CNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQR 95
LVQ G C I++ RC N + +Q V+ C +CV+ S+V
Sbjct: 4711 LVQDGRCVPISSCRCGLPSANASWELAPAQAVQLDC----------QNCTCVNESLVC-- 4758
Query: 96 WWCQMEPCLPGEECKVLPDLSGWSCSS 122
P +EC VL S WS S
Sbjct: 4759 ---------PHQECPVLGPWSAWSSCS 4776
>gi|22749455 ring finger protein 182 [Homo sapiens]
Length = 247
Score = 26.9 bits (58), Expect = 4.8
Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 18/92 (19%)
Query: 31 ALQPPTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDAS 90
A QPP T Q + + C NR +++R V C R C+
Sbjct: 2 ASQPPEDTAESQAS--DELECKICYNRYNLKQRKPKVLECCH--------RVCAKCLYKI 51
Query: 91 I--------VLQRWWCQMEPCLPGEECKVLPD 114
I V+ +C+ E CLP +E LPD
Sbjct: 52 IDFGDSPQGVIVCPFCRFETCLPDDEVSSLPD 83
>gi|237858797 lymphocyte antigen 6 complex, locus K isoform 3
[Homo sapiens]
Length = 105
Score = 26.6 bits (57), Expect = 6.3
Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 15 LLALCLAWLWTHLTLAALQ-PPTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFS 73
LL + L +WT L A Q P + +G V H C ER T +C
Sbjct: 7 LLVVALPRVWTDANLTARQRDPEDSQRTDEGDNRVWC-HVC-------ERENTFECQ--- 55
Query: 74 GQVAGTTRAK---PSCVDASIVLQRWWC 98
R K P CV A++ + RW C
Sbjct: 56 ----NPRRCKWTEPYCVIAAVTVLRWLC 79
>gi|169171558 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 26.6 bits (57), Expect = 6.3
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 10/65 (15%)
Query: 35 PTATVLVQQGTCEVIAAHRCCNRNRIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQ 94
P T+ +Q C + +A E + + S QV A+P A IV++
Sbjct: 76 PVITIATRQNLCSLASA----------EPGEQYRPSNEQSQVTAGPPARPLASQAPIVIK 125
Query: 95 RWWCQ 99
RW+ Q
Sbjct: 126 RWFQQ 130
>gi|239752966 PREDICTED: hypothetical protein [Homo sapiens]
Length = 117
Score = 26.6 bits (57), Expect = 6.3
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 94 QRWWCQMEPCLPGEEC 109
+RW+C+ C PGE C
Sbjct: 4 RRWFCRRWNCTPGESC 19
>gi|239748163 PREDICTED: similar to mCG127065 [Homo sapiens]
Length = 171
Score = 26.6 bits (57), Expect = 6.3
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 39 VLVQQGTCEVIAAHRCCNRNRI----EERSQTVKCSC 71
+L+ GTCE + CC +R +E CSC
Sbjct: 104 LLMLPGTCETVCTKMCCPSHRYHHTSDENHSRNDCSC 140
>gi|239753596 PREDICTED: similar to mCG127065 [Homo sapiens]
Length = 171
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 39 VLVQQGTCEVIAAHRCCNRNRI----EERSQTVKCSC 71
+L+ GTCE + CC R +E CSC
Sbjct: 104 LLMLPGTCETVCTKMCCPSRRYHHTSDENHSRNDCSC 140
>gi|169164961 PREDICTED: similar to mCG127065 [Homo sapiens]
Length = 171
Score = 26.2 bits (56), Expect = 8.2
Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 39 VLVQQGTCEVIAAHRCCNRNRI----EERSQTVKCSC 71
+L+ GTCE + CC R +E CSC
Sbjct: 104 LLMLPGTCETVCTKMCCPSRRYHHTSDENHSRNDCSC 140
>gi|209571521 cysteine rich BMP regulator 2 isoform 2 [Homo sapiens]
Length = 814
Score = 26.2 bits (56), Expect = 8.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 59 RIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPC-LPGEECKVLP--DL 115
R++ER V+CSC +G+V SC + C + PC LP ++ P +L
Sbjct: 382 RLQERGLCVRCSCQAGEV--------SCEEQE-------CPVTPCALPASGRQLCPACEL 426
Query: 116 SGWSCSSG 123
G + G
Sbjct: 427 DGEEFAEG 434
>gi|209571519 cysteine rich BMP regulator 2 isoform 1 [Homo sapiens]
Length = 1503
Score = 26.2 bits (56), Expect = 8.2
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 18/68 (26%)
Query: 59 RIEERSQTVKCSCFSGQVAGTTRAKPSCVDASIVLQRWWCQMEPC-LPGEECKVLP--DL 115
R++ER V+CSC +G+V SC + C + PC LP ++ P +L
Sbjct: 324 RLQERGLCVRCSCQAGEV--------SCEEQE-------CPVTPCALPASGRQLCPACEL 368
Query: 116 SGWSCSSG 123
G + G
Sbjct: 369 DGEEFAEG 376
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.130 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,864,912
Number of Sequences: 37866
Number of extensions: 229004
Number of successful extensions: 585
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 554
Number of HSP's gapped (non-prelim): 49
length of query: 133
length of database: 18,247,518
effective HSP length: 91
effective length of query: 42
effective length of database: 14,801,712
effective search space: 621671904
effective search space used: 621671904
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.