Guide to the Human Genome
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Name: LOC100132934 Sequence: fasta or formatted (195aa) NCBI GI: 169163540
Description:

PREDICTED: similar to hCG1644233

Referenced in:

Left-Right Axis

Other entries for this name:
alt prot [195aa] PREDICTED: similar to hCG1644233
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         16           1
 C cysteine            7.2         14           2
 D aspartate           4.1          8           2
 E glutamate           5.6         11           2
 F phenylalanine       3.6          7           1
 G glycine             9.7         19           2
 H histidine           2.6          5           1
 I isoleucine          2.1          4           1
 K lysine              3.6          7           2
 L leucine             7.7         15           1
 M methionine          3.1          6           1
 N asparagine          2.1          4           1
 P proline             8.7         17           2
 Q glutamine           5.1         10           2
 R arginine            7.7         15           1
 S serine              6.7         13           2
 T threonine           4.1          8           2
 V valine              5.6         11           1
 W tryptophan          2.1          4           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1644233 
LOC100132934          0.992   PREDICTED: similar to hCG1644233 
TDGF1                 0.594   teratocarcinoma-derived growth factor 1 
CFC1                  0.128   cryptic 
CFC1B                 0.128   cripto, FRL-1, cryptic family 1B 
WIF1                  0.048   WNT inhibitory factor 1 precursor 
NOTCH1                0.038   notch1 preproprotein 
MEGF6                 0.038   EGF-like-domain, multiple 3 
NOTCH3                0.038   Notch homolog 3 
MEGF11                0.038   multiple EGF-like-domains 11 
FAT2                  0.038   FAT tumor suppressor 2 precursor 
EYS                   0.035   eyes shut homolog isoform 1 
VWDE                  0.035   von Willebrand factor D and EGF domains 
PEAR1                 0.033   platelet endothelial aggregation receptor 1 
KCP                   0.030   cysteine rich BMP regulator 2 isoform 2 
KCP                   0.030   cysteine rich BMP regulator 2 isoform 1 
HSPG2                 0.030   heparan sulfate proteoglycan 2 
FBN1                  0.028   fibrillin 1 precursor 
NOTCH2                0.028   notch 2 preproprotein 
MUC3A                 0.028   PREDICTED: mucin 3A, cell surface associated, parti...
MUC3A                 0.028   PREDICTED: mucin 3A, intestinal 
NELL2                 0.028   NEL-like protein 2 isoform d 
NELL2                 0.028   NEL-like protein 2 isoform c 
NELL2                 0.028   NEL-like protein 2 isoform b precursor 
NELL2                 0.028   NEL-like protein 2 isoform a 
NELL2                 0.028   NEL-like protein 2 isoform b precursor 
CRB1                  0.028   crumbs homolog 1 precursor 
NOTCH4                0.025   notch4 preproprotein 
SVEP1                 0.025   polydom 
ITGB5                 0.025   integrin, beta 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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