Guide to the Human Genome
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Name: LOC100128160 Sequence: fasta or formatted (171aa) NCBI GI: 169164961
Description:

PREDICTED: similar to mCG127065

Not currently referenced in the text

Other entries for this name:
alt prot {171aa} PREDICTED: similar to mCG127065
alt mRNA {171aa} PREDICTED: similar to mCG127065
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.7          8           1
 C cysteine            9.4         16           2
 D aspartate           6.4         11           1
 E glutamate           9.4         16           2
 F phenylalanine       2.9          5           1
 G glycine             1.8          3           1
 H histidine           4.7          8           2
 I isoleucine          5.3          9           1
 K lysine              3.5          6           2
 L leucine             8.8         15           2
 M methionine          2.9          5           1
 N asparagine          5.3          9           1
 P proline             2.9          5           1
 Q glutamine           2.9          5           1
 R arginine            4.1          7           2
 S serine             11.7         20           2
 T threonine           8.8         15           2
 V valine              2.3          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to mCG127065 
LOC100128160          1.000   PREDICTED: similar to mCG127065 
LOC100128160          0.994   PREDICTED: similar to mCG127065 
MDFIC                 0.124   MyoD family inhibitor domain containing protein isof...
MDFI                  0.106   MyoD family inhibitor 
C12orf64              0.024   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.024   PREDICTED: chromosome 12 open reading frame 64 [Hom...
C12orf64              0.024   PREDICTED: hypothetical protein LOC283310 
FRAS1                 0.018   Fraser syndrome 1 
LAMA2                 0.015   laminin alpha 2 subunit isoform b precursor 
LAMA2                 0.015   laminin alpha 2 subunit isoform a precursor 
NOTCH2                0.012   notch 2 preproprotein 
PALM2-AKAP2           0.012   PALM2-AKAP2 protein isoform 2 
PALM2-AKAP2           0.012   PALM2-AKAP2 protein isoform 1 
AKAP2                 0.012   A kinase (PRKA) anchor protein 2 isoform 2 
AKAP2                 0.012   A kinase (PRKA) anchor protein 2 isoform 1 
TECTA                 0.009   tectorin alpha precursor 
KRTAP5-8              0.009   keratin associated protein 5-8 
LOC643008             0.009   hypothetical protein LOC643008 
SCUBE3                0.009   signal peptide, CUB domain, EGF-like 3 
ZNF280A               0.009   zinc finger protein 280A 
NTNG2                 0.009   netrin G2 
NCOA7                 0.009   nuclear receptor coactivator 7 isoform 2 
NCOA7                 0.009   nuclear receptor coactivator 7 isoform 1 
AP4E1                 0.009   adaptor-related protein complex 4, epsilon 1 subunit...
SULF2                 0.006   sulfatase 2 isoform a precursor 
SULF2                 0.006   sulfatase 2 isoform b precursor 
SULF2                 0.006   sulfatase 2 isoform a precursor 
LOC100132635          0.006   PREDICTED: similar to mucin 5, partial 
BRDT                  0.006   testis-specific bromodomain protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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