Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FAM101B Sequence: fasta or formatted (214aa) NCBI GI: 33186901
Description:

hypothetical protein LOC359845

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.8         21           4
 C cysteine            2.8          6           1
 D aspartate           6.5         14           2
 E glutamate           6.1         13           1
 F phenylalanine       2.8          6           1
 G glycine             7.9         17           5
 H histidine           1.4          3           1
 I isoleucine          0.9          2           1
 K lysine              4.2          9           3
 L leucine            11.2         24           1
 M methionine          0.5          1           1
 N asparagine          1.4          3           1
 P proline            11.2         24           2
 Q glutamine           1.4          3           1
 R arginine            6.1         13           2
 S serine              8.4         18           2
 T threonine           6.1         13           3
 V valine              7.0         15           1
 W tryptophan          0.9          2           1
 Y tyrosine            3.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC359845 
FAM101A               0.187   hypothetical protein LOC144347 
LOC100131102          0.046   PREDICTED: hypothetical protein 
LOC100131102          0.046   PREDICTED: hypothetical protein 
LOC100131102          0.046   PREDICTED: hypothetical protein 
FZD8                  0.038   frizzled 8 
LOC100293375          0.029   PREDICTED: hypothetical protein 
MBD6                  0.029   methyl-CpG binding domain protein 6 
PTPN23                0.029   protein tyrosine phosphatase, non-receptor type 23 [...
ZNF703                0.026   zinc finger protein 703 
LOC100292180          0.024   PREDICTED: hypothetical protein 
LOC100288278          0.024   PREDICTED: hypothetical protein 
LOC100288278          0.024   PREDICTED: hypothetical protein XP_002342826 
LOC100288278          0.024   PREDICTED: hypothetical protein 
LOC100290783          0.024   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.024   PREDICTED: hypothetical protein XP_002343435 
SALL2                 0.024   sal-like 2 
LOC100133142          0.024   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.024   PREDICTED: similar to zinc finger protein 208 [Homo...
ZNRF2                 0.024   zinc finger/RING finger 2 
MEX3A                 0.024   MEX3A protein 
ATOH8                 0.022   atonal homolog 8 
HOXD8                 0.022   homeobox D8 
PHOX2B                0.022   paired-like homeobox 2b 
JPH4                  0.022   junctophilin 4 
JPH4                  0.022   junctophilin 4 
SHANK1                0.022   SH3 and multiple ankyrin repeat domains 1 
ZXDB                  0.022   zinc finger, X-linked, duplicated B 
GNAS                  0.019   GNAS complex locus XLas 
LOC100291582          0.019   PREDICTED: hypothetical protein XP_002345268 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press