Guide to the Human Genome
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Name: SALL2 Sequence: fasta or formatted (1007aa) NCBI GI: 49087132
Description:

sal-like 2

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.1         92           4
 C cysteine            2.3         23           2
 D aspartate           2.3         23           2
 E glutamate           8.1         82           6
 F phenylalanine       2.8         28           2
 G glycine             9.6         97           5
 H histidine           3.4         34           2
 I isoleucine          2.1         21           2
 K lysine              4.4         44           2
 L leucine             8.0         81           3
 M methionine          1.5         15           1
 N asparagine          2.6         26           2
 P proline            11.0        111          11
 Q glutamine           5.4         54           3
 R arginine            3.9         39           2
 S serine             11.4        115          10
 T threonine           6.4         64           2
 V valine              4.8         48           1
 W tryptophan          0.2          2           1
 Y tyrosine            0.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   sal-like 2 
SALL3                 0.220   sal-like 3 
SALL1                 0.214   sal-like 1 isoform a 
SALL1                 0.198   sal-like 1 isoform b 
SALL4                 0.161   sal-like 4 
ZNF236                0.042   zinc finger protein 236 
E4F1                  0.031   p120E4F 
ZNF226                0.029   zinc finger protein 226 isoform a 
ZNF226                0.029   zinc finger protein 226 isoform a 
LOC100133142          0.028   PREDICTED: similar to zinc finger protein 208 [Homo...
LOC100133142          0.028   PREDICTED: similar to zinc finger protein 208 [Homo...
REPIN1                0.027   replication initiator 1 isoform 1 
REPIN1                0.027   replication initiator 1 isoform 1 
REPIN1                0.027   replication initiator 1 isoform 3 
REPIN1                0.027   replication initiator 1 isoform 1 
FIZ1                  0.027   FLT3-interacting zinc finger 1 
HIVEP3                0.027   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.027   human immunodeficiency virus type I enhancer bindin...
RREB1                 0.026   ras responsive element binding protein 1 isoform 1 [...
ZNF579                0.025   zinc finger protein 579 
PRDM1                 0.025   PR domain containing 1, with ZNF domain isoform 1 [...
PRDM1                 0.025   PR domain containing 1, with ZNF domain isoform 2 [H...
ZNF219                0.025   zinc finger protein 219 
ZNF219                0.025   zinc finger protein 219 
ZNF219                0.025   zinc finger protein 219 
BCL6B                 0.025   B-cell CLL/lymphoma 6, member B (zinc finger protein...
ZNF443                0.024   zinc finger protein 443 
ZNF77                 0.023   zinc finger protein 77 
KLF13                 0.023   Kruppel-like factor 13 
ZBTB38                0.023   zinc finger and BTB domain containing 38 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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