Guide to the Human Genome
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Name: LOC100288278 Sequence: fasta or formatted (112aa) NCBI GI: 239743356
Description:

PREDICTED: hypothetical protein XP_002342826

Not currently referenced in the text

Other entries for this name:
alt mRNA {112aa} PREDICTED: hypothetical protein
alt mRNA {112aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.0          9           2
 C cysteine            1.8          2           1
 D aspartate           2.7          3           1
 E glutamate           1.8          2           1
 F phenylalanine       0.0          0           0
 G glycine            10.7         12           1
 H histidine           2.7          3           1
 I isoleucine          0.9          1           1
 K lysine              0.0          0           0
 L leucine            14.3         16           2
 M methionine          0.9          1           1
 N asparagine          0.0          0           0
 P proline            18.8         21           2
 Q glutamine           6.2          7           1
 R arginine            9.8         11           2
 S serine             12.5         14           3
 T threonine           0.9          1           1
 V valine              6.2          7           1
 W tryptophan          1.8          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342826 
LOC100292180          1.000   PREDICTED: hypothetical protein 
LOC100288278          1.000   PREDICTED: hypothetical protein 
LOC100288278          1.000   PREDICTED: hypothetical protein 
LOC100131102          0.090   PREDICTED: hypothetical protein 
LOC100131102          0.071   PREDICTED: hypothetical protein 
LOC100131102          0.071   PREDICTED: hypothetical protein 
LOC100132891          0.067   PREDICTED: hypothetical protein 
LOC100132891          0.067   PREDICTED: hypothetical protein 
LOC100132891          0.067   PREDICTED: hypothetical protein 
DAAM2                 0.067   dishevelled associated activator of morphogenesis 2 ...
ARHGAP17              0.062   nadrin isoform 1 
COL18A1               0.052   alpha 1 type XVIII collagen isoform 3 precursor [Ho...
ADAM15                0.052   a disintegrin and metalloproteinase domain 15 isofor...
COL18A1               0.052   alpha 1 type XVIII collagen isoform 2 precursor [Ho...
COL18A1               0.052   alpha 1 type XVIII collagen isoform 1 precursor [Ho...
COL8A1                0.052   alpha 1 type VIII collagen precursor 
COL8A1                0.052   alpha 1 type VIII collagen precursor 
LOC100292727          0.052   PREDICTED: hypothetical protein 
DRD4                  0.048   dopamine receptor D4 
LOC100287524          0.048   PREDICTED: hypothetical protein XP_002342307 
MYO9B                 0.048   myosin IXB isoform 1 
FAM101B               0.048   hypothetical protein LOC359845 
LOC100293919          0.048   PREDICTED: hypothetical protein 
GPR153                0.048   G protein-coupled receptor 153 
DNM3                  0.048   dynamin 3 isoform a 
DNM3                  0.048   dynamin 3 isoform b 
ARHGAP17              0.048   nadrin isoform 2 
TBKBP1                0.048   TBK1 binding protein 1 
IER5                  0.043   immediate early response 5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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