Guide to the Human Genome
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Name: FAM101A Sequence: fasta or formatted (135aa) NCBI GI: 116268099
Description:

hypothetical protein LOC144347

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         10           2
 C cysteine            3.0          4           1
 D aspartate           1.5          2           1
 E glutamate           5.2          7           1
 F phenylalanine       5.9          8           2
 G glycine             2.2          3           1
 H histidine           3.0          4           1
 I isoleucine          3.7          5           2
 K lysine              3.7          5           1
 L leucine             8.1         11           2
 M methionine          1.5          2           1
 N asparagine          3.0          4           1
 P proline            10.4         14           1
 Q glutamine           3.7          5           1
 R arginine            9.6         13           1
 S serine              8.1         11           1
 T threonine           9.6         13           2
 V valine              5.9          8           1
 W tryptophan          1.5          2           1
 Y tyrosine            3.0          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC144347 
FAM101B               0.302   hypothetical protein LOC359845 
PTPRC                 0.016   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.016   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.016   protein tyrosine phosphatase, receptor type, C isofo...
SCUBE2                0.008   CEGP1 protein 
LOC100290755          0.008   PREDICTED: hypothetical protein XP_002346496 
FGD5                  0.008   FYVE, RhoGEF and PH domain containing 5 
TAF1                  0.004   TBP-associated factor 1 isoform 2 
TAF1                  0.004   TBP-associated factor 1 isoform 1 
ZNF462                0.004   zinc finger protein 462 
NGEF                  0.004   neuronal guanine nucleotide exchange factor isoform...
NGEF                  0.004   neuronal guanine nucleotide exchange factor isoform...
TAF1L                 0.004   TBP-associated factor RNA polymerase 1-like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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