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Search of human proteins with 12408654
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12408654 beta-1,3-glucuronyltransferase 3 [Homo sapiens]
(335 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12408654 beta-1,3-glucuronyltransferase 3 [Homo sapiens] 683 0.0
gi|16905510 beta-1,3-glucuronyltransferase 1 [Homo sapiens] 264 1e-70
gi|77695914 beta-1,3-glucuronyltransferase 1 [Homo sapiens] 264 1e-70
gi|18152775 beta-1,3-glucuronyltransferase 2 [Homo sapiens] 248 7e-66
gi|119226260 calcium homeostasis endoplasmic reticulum protein [... 38 0.011
gi|239752942 PREDICTED: hypothetical protein [Homo sapiens] 36 0.042
gi|239747476 PREDICTED: hypothetical protein XP_002347543 [Homo ... 36 0.042
gi|239741348 PREDICTED: hypothetical protein XP_002342180 [Homo ... 36 0.042
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.27
gi|118498345 AT-binding transcription factor 1 [Homo sapiens] 33 0.36
gi|169636435 caudal type homeobox 2 [Homo sapiens] 33 0.47
gi|50511941 EMI domain containing 1 [Homo sapiens] 33 0.47
gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens] 32 0.61
gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo sa... 32 0.61
gi|145386517 phostensin [Homo sapiens] 32 0.61
gi|199559805 phostensin [Homo sapiens] 32 0.61
gi|48762934 alpha 2 type I collagen [Homo sapiens] 32 0.80
gi|116734706 interferon regulatory factor 2 binding protein 2 is... 32 0.80
gi|98986321 gliomedin [Homo sapiens] 32 0.80
gi|116734704 interferon regulatory factor 2 binding protein 2 is... 32 0.80
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 31 1.4
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 31 1.4
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 31 1.4
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 31 1.4
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 31 1.8
gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B... 31 1.8
gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B... 31 1.8
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ... 31 1.8
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ... 31 1.8
gi|158420731 chromodomain helicase DNA binding protein 3 isoform... 31 1.8
>gi|12408654 beta-1,3-glucuronyltransferase 3 [Homo sapiens]
Length = 335
Score = 683 bits (1763), Expect = 0.0
Identities = 335/335 (100%), Positives = 335/335 (100%)
Query: 1 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR 60
MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR
Sbjct: 1 MKLKLKNVFLAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRR 60
Query: 61 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL 120
PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL
Sbjct: 61 PPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPL 120
Query: 121 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD 180
VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD
Sbjct: 121 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD 180
Query: 181 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH 240
PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH
Sbjct: 181 PPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVGFH 240
Query: 241 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN 300
TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN
Sbjct: 241 TAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPRGHLESSLLSHLVDPKDLEPRAAN 300
Query: 301 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV 335
CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV
Sbjct: 301 CTRVLVWHTRTEKPKMKQEEQLQRQGRGSDPAIEV 335
>gi|16905510 beta-1,3-glucuronyltransferase 1 [Homo sapiens]
Length = 334
Score = 264 bits (674), Expect = 1e-70
Identities = 149/271 (54%), Positives = 181/271 (66%), Gaps = 16/271 (5%)
Query: 68 PPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAA 127
PP + LPTI+VVTPTY+R VQKAEL R++ TL VP LHWL+VEDA TPL + LL
Sbjct: 77 PPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRD 136
Query: 128 SGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQ 187
+GL +THL V TP+ +LR PRG QRN AL WLR E P
Sbjct: 137 TGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLR--------ETFPRNSSQP 188
Query: 188 GVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQD-GRVVGFHTAWEPS 246
GVVYFADDDNTYS ELFEEMR TR VSVWPV VGGLR+E P+V G+VVG+ T ++P
Sbjct: 189 GVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPH 248
Query: 247 RPFPVDMAGFAVALPLLLDKPNAQFDSTAPR-GHLESSLLSHLVDPKDLEPRAANCTRVL 305
RPF +DMAGFAV L L+L + A F + G+ ESSLL LV DLEP+AANCT++L
Sbjct: 249 RPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKIL 308
Query: 306 VWHTRTEKPKMKQEEQLQRQGRG-SDPAIEV 335
VWHTRTEKP + E + +G +DP++E+
Sbjct: 309 VWHTRTEKPVLVNEGK-----KGFTDPSVEI 334
>gi|77695914 beta-1,3-glucuronyltransferase 1 [Homo sapiens]
Length = 334
Score = 264 bits (674), Expect = 1e-70
Identities = 149/271 (54%), Positives = 181/271 (66%), Gaps = 16/271 (5%)
Query: 68 PPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSGLLAA 127
PP + LPTI+VVTPTY+R VQKAEL R++ TL VP LHWL+VEDA TPL + LL
Sbjct: 77 PPWSDTLPTIHVVTPTYSRPVQKAELTRMANTLLHVPNLHWLVVEDAPRRTPLTARLLRD 136
Query: 128 SGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQ 187
+GL +THL V TP+ +LR PRG QRN AL WLR E P
Sbjct: 137 TGLNYTHLHVETPRNYKLRGDARDPRIPRGTMQRNLALRWLR--------ETFPRNSSQP 188
Query: 188 GVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQD-GRVVGFHTAWEPS 246
GVVYFADDDNTYS ELFEEMR TR VSVWPV VGGLR+E P+V G+VVG+ T ++P
Sbjct: 189 GVVYFADDDNTYSLELFEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVGWKTVFDPH 248
Query: 247 RPFPVDMAGFAVALPLLLDKPNAQFDSTAPR-GHLESSLLSHLVDPKDLEPRAANCTRVL 305
RPF +DMAGFAV L L+L + A F + G+ ESSLL LV DLEP+AANCT++L
Sbjct: 249 RPFAIDMAGFAVNLRLILQRSQAYFKLRGVKGGYQESSLLRELVTLNDLEPKAANCTKIL 308
Query: 306 VWHTRTEKPKMKQEEQLQRQGRG-SDPAIEV 335
VWHTRTEKP + E + +G +DP++E+
Sbjct: 309 VWHTRTEKPVLVNEGK-----KGFTDPSVEI 334
>gi|18152775 beta-1,3-glucuronyltransferase 2 [Homo sapiens]
Length = 323
Score = 248 bits (632), Expect = 7e-66
Identities = 136/262 (51%), Positives = 168/262 (64%), Gaps = 16/262 (6%)
Query: 59 RRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPT 118
+R P PEP+ LPTIY +TPTY+R VQKAEL RL+ T V +LHW+LVEDA +
Sbjct: 65 KRNQSRPQPQPEPQ-LPTIYAITPTYSRPVQKAELTRLANTFRQVAQLHWILVEDAAARS 123
Query: 119 PLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGE 178
LVS LA +GL THL V TP+ R PG PR EQRN L WLR +
Sbjct: 124 ELVSRFLARAGLPSTHLHVPTPR----RYKRPGL--PRATEQRNAGLAWLR--------Q 169
Query: 179 KDPPPPGTQGVVYFADDDNTYSRELFEEMRWTRGVSVWPVGLVGGLRFEGPQVQDGRVVG 238
+ GV++FADDDNTYS ELF+EMR TR VSVWPVGLVGG R+E P V++G+VVG
Sbjct: 170 RHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVGLVGGRRYERPLVENGKVVG 229
Query: 239 FHTAWEPSRPFPVDMAGFAVALPLLLDKPNAQFDSTAPR-GHLESSLLSHLVDPKDLEPR 297
++T W RPF +DMAGFAV+L ++L P A F + G ES L + ++LEP+
Sbjct: 230 WYTGWRADRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDFLKQITTVEELEPK 289
Query: 298 AANCTRVLVWHTRTEKPKMKQE 319
A NCT+VLVWHTRTEK + E
Sbjct: 290 ANNCTKVLVWHTRTEKVNLANE 311
>gi|119226260 calcium homeostasis endoplasmic reticulum protein
[Homo sapiens]
Length = 916
Score = 38.1 bits (87), Expect = 0.011
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 42 EQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTI 77
+Q +Q+ L++ Q++AE++ PP PA PP P P I
Sbjct: 335 QQQQQQQLQMPQMEAEVKATPPPPAPPPAPAPAPAI 370
>gi|239752942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 36.2 bits (82), Expect = 0.042
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 34 LPPLRA--AAEQLRQKDLRISQLQAELRRPPP-----APAQP------PEPEALPTIYVV 80
+P +RA A QL + R LQ L+ PP PA P P P +LP
Sbjct: 146 VPHIRAQPAITQLGLEVARCRWLQRSLQTPPSHLPPTIPAPPAELHYSPHPNSLPPATFT 205
Query: 81 TPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSG 123
T R K E++ ++TL+ + R +L P +VSG
Sbjct: 206 FCTKFRAAPKCEMILSTETLTAIRRPGRMLFRGLRAPAQVVSG 248
>gi|239747476 PREDICTED: hypothetical protein XP_002347543 [Homo
sapiens]
Length = 278
Score = 36.2 bits (82), Expect = 0.042
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 34 LPPLRA--AAEQLRQKDLRISQLQAELRRPPP-----APAQP------PEPEALPTIYVV 80
+P +RA A QL + R LQ L+ PP PA P P P +LP
Sbjct: 146 VPHIRAQPAITQLGLEVARCRWLQRSLQTPPSHLPPTIPAPPAELHYSPHPNSLPPATFT 205
Query: 81 TPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSG 123
T R K E++ ++TL+ + R +L P +VSG
Sbjct: 206 FCTKFRAAPKCEMILSTETLTAIRRPGRMLFRGLRAPAQVVSG 248
>gi|239741348 PREDICTED: hypothetical protein XP_002342180 [Homo
sapiens]
Length = 278
Score = 36.2 bits (82), Expect = 0.042
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Query: 34 LPPLRA--AAEQLRQKDLRISQLQAELRRPPP-----APAQP------PEPEALPTIYVV 80
+P +RA A QL + R LQ L+ PP PA P P P +LP
Sbjct: 146 VPHIRAQPAITQLGLEVARCRWLQRSLQTPPSHLPPTIPAPPAELHYSPHPNSLPPATFT 205
Query: 81 TPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPTPLVSG 123
T R K E++ ++TL+ + R +L P +VSG
Sbjct: 206 FCTKFRAAPKCEMILSTETLTAIRRPGRMLFRGLRAPAQVVSG 248
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.5 bits (75), Expect = 0.27
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 144 RLREGEPGWVHPRGVE--QRNKALDWLRGRGGAVGGEKDPPPPGTQGV 189
R ++G PG RG+ + L RG G VGG DP PPG G+
Sbjct: 2146 RGQDGNPGLPGERGMAGPEGKPGLQGPRGPPGPVGGHGDPGPPGAPGL 2193
>gi|118498345 AT-binding transcription factor 1 [Homo sapiens]
Length = 3703
Score = 33.1 bits (74), Expect = 0.36
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 61 PPPAPAQPPEPEALPTI-----YVVTPTYARLVQKAELVRLSQTLSL 102
PPP PA PP+P + P I + +PT A L +LS + L
Sbjct: 2048 PPPLPAAPPQPASTPAIPASAPPITSPTIAPAQPSVPLTQLSMPMEL 2094
>gi|169636435 caudal type homeobox 2 [Homo sapiens]
Length = 313
Score = 32.7 bits (73), Expect = 0.47
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 38 RAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIYVVTP 82
RA ++ +K L+ Q Q + +PPP P QPP+P+ P V P
Sbjct: 238 RAKERKINKKKLQ-QQQQQQPPQPPPPPPQPPQPQPGPLRSVPEP 281
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 32.7 bits (73), Expect = 0.47
Identities = 40/136 (29%), Positives = 54/136 (39%), Gaps = 20/136 (14%)
Query: 60 RPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSLVPRLHWLLVEDAEGPT- 118
R PP P PP P P V P +AR+ Q + + LS T + HW +GPT
Sbjct: 246 RGPPGPPGPPGPPGPPA--PVGPPHARISQHGDPL-LSNTFTETNN-HW-----PQGPTG 296
Query: 119 -PLVSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGV-----EQRNKALDWLRGRG 172
P G + G V +P G PG P+G+ E+ + L G
Sbjct: 297 PPGPPGPMGPPGPPGPTGVPGSPG----HIGPPGPTGPKGISGHPGEKGERGLRGEPGPQ 352
Query: 173 GAVGGEKDPPPPGTQG 188
G+ G +P P G G
Sbjct: 353 GSAGQRGEPGPKGDPG 368
>gi|148839378 gap junction protein, delta 3, 31.9kDa [Homo sapiens]
Length = 294
Score = 32.3 bits (72), Expect = 0.61
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 6 KNVF-LAYFLVSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRRPPPA 64
K VF L YF V + L ++ +LG L + ++D R ++ E ++ P
Sbjct: 187 KTVFVLFYFAVGLLSALLSVAELGHL------LWKGRPRAGERDNRCNRAHEEAQKLLPP 240
Query: 65 PAQPPEPEALPT 76
P PP P ALP+
Sbjct: 241 PPPPPPPPALPS 252
>gi|7662046 myeloid/lymphoid or mixed-lineage leukemia 4 [Homo
sapiens]
Length = 2715
Score = 32.3 bits (72), Expect = 0.61
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 44 LRQKDLRISQLQAELRRPPPAPAQPPEPEALP 75
LR+ R + L EL PPPAP PP P P
Sbjct: 604 LREPTFRWTSLTRELPPPPPAPPPPPAPSPPP 635
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 32.3 bits (72), Expect = 0.61
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 34 LPPLRAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEP 71
LPP A LRQ++ + EL+ PPPAP PP P
Sbjct: 403 LPPEDAGTGGLRQQE----EEAVELQPPPPAPLSPPPP 436
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 32.3 bits (72), Expect = 0.61
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 34 LPPLRAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEP 71
LPP A LRQ++ + EL+ PPPAP PP P
Sbjct: 403 LPPEDAGTGGLRQQE----EEAVELQPPPPAPLSPPPP 436
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 32.0 bits (71), Expect = 0.80
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 137 VLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQG 188
V+ P+ R G PG +G+ N LD L+G+ GA G + +P PG G
Sbjct: 158 VVGPQGARGFPGTPGLPGFKGIRGHN-GLDGLKGQPGAPGVKGEPGAPGENG 208
>gi|116734706 interferon regulatory factor 2 binding protein 2
isoform B [Homo sapiens]
Length = 571
Score = 32.0 bits (71), Expect = 0.80
Identities = 48/163 (29%), Positives = 66/163 (40%), Gaps = 22/163 (13%)
Query: 36 PLRAAAEQLRQKDLRISQLQAEL--RRPPPAPAQPPEPEALPTIYVVTPT-YARLVQKAE 92
PL AAAE R +L ++ RP + AQPP P+ P ++ P +++L + E
Sbjct: 118 PLAAAAE-------RPPRLGSDFGSSRPAASLAQPPTPQPPPVNGILVPNGFSKLEEPPE 170
Query: 93 LVRLS---QTLSLVPRLHWLLVEDAEGPTPLVSGL--LAASGLLFTHLVVLTPKAQRLRE 147
L R S + VP L+ + P P GL AA+ L V A L
Sbjct: 171 LNRQSPNPRRGHAVPPTLVPLMNGSATPLPTALGLGGRAAASL----AAVSGTAAASLGS 226
Query: 148 GEPG--WVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQG 188
+P H R + A R A EK PPPP +G
Sbjct: 227 AQPTDLGAHKRPASVSSSAAVEHEQR-EAAAKEKQPPPPAHRG 268
>gi|98986321 gliomedin [Homo sapiens]
Length = 551
Score = 32.0 bits (71), Expect = 0.80
Identities = 41/188 (21%), Positives = 70/188 (37%), Gaps = 34/188 (18%)
Query: 15 VSIAGLLYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEAL 74
++ AG ++AL Q L L A + +++D + AEL R P + PP+ A
Sbjct: 29 LNAAGTVFALCQWRGLSSALRALEAQRGREQREDSALRSFLAELSRAPRGASAPPQDPAS 88
Query: 75 -----------PTIYVVTPTYARLVQKA-ELVRLSQTLSLVPRLHWLLVEDAEGP--TPL 120
P ++ ++ L+ +V + + L + + GP P
Sbjct: 89 SARNKRSHSGEPAPHIRAESHDMLMMMTYSMVPIRVMVDLCNSTKGICLTGPSGPPGPPG 148
Query: 121 VSGLLAASGLLFTHLVVLTPKAQRLREGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKD 180
GL +GL +G+PG P+G K + RG+ G G +
Sbjct: 149 AGGLPGHNGL----------------DGQPGPQGPKG----EKGANGKRGKMGIPGAAGN 188
Query: 181 PPPPGTQG 188
P G +G
Sbjct: 189 PGERGEKG 196
>gi|116734704 interferon regulatory factor 2 binding protein 2
isoform A [Homo sapiens]
Length = 587
Score = 32.0 bits (71), Expect = 0.80
Identities = 48/163 (29%), Positives = 66/163 (40%), Gaps = 22/163 (13%)
Query: 36 PLRAAAEQLRQKDLRISQLQAEL--RRPPPAPAQPPEPEALPTIYVVTPT-YARLVQKAE 92
PL AAAE R +L ++ RP + AQPP P+ P ++ P +++L + E
Sbjct: 118 PLAAAAE-------RPPRLGSDFGSSRPAASLAQPPTPQPPPVNGILVPNGFSKLEEPPE 170
Query: 93 LVRLS---QTLSLVPRLHWLLVEDAEGPTPLVSGL--LAASGLLFTHLVVLTPKAQRLRE 147
L R S + VP L+ + P P GL AA+ L V A L
Sbjct: 171 LNRQSPNPRRGHAVPPTLVPLMNGSATPLPTALGLGGRAAASL----AAVSGTAAASLGS 226
Query: 148 GEPG--WVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQG 188
+P H R + A R A EK PPPP +G
Sbjct: 227 AQPTDLGAHKRPASVSSSAAVEHEQR-EAAAKEKQPPPPAHRG 268
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 147 EGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQG 188
+G PG P GV + +D +G G++G + +P PPG QG
Sbjct: 529 KGPPGIPGPPGV----RGMDGPQGPKGSLGPQGEPGPPGQQG 566
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 147 EGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQG 188
+G PG P GV + +D +G G++G + +P PPG QG
Sbjct: 508 KGPPGIPGPPGV----RGMDGPQGPKGSLGPQGEPGPPGQQG 545
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 31.2 bits (69), Expect = 1.4
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Query: 147 EGEPGWVHPRGVEQRNKALDWLRGRGGAVGGEKDPPPPGTQG 188
+G PG P GV + +D +G G++G + +P PPG QG
Sbjct: 615 KGPPGIPGPPGV----RGMDGPQGPKGSLGPQGEPGPPGQQG 652
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 31.2 bits (69), Expect = 1.4
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 20/77 (25%)
Query: 3 LKLKNVFLAYFLVSIAGLLYALVQL----GQPCDCLPPLRAAAEQLRQKDLRISQLQAEL 58
+KL++ A L+++A LL AL+ L +P LP A+A Q
Sbjct: 1 MKLRSKAAALLLLALAALLLALLSLRAGRAEP-PALPARPASAPQ--------------- 44
Query: 59 RRPPPAPAQPPEPEALP 75
R P P PA+ P P ALP
Sbjct: 45 RHPAPVPARWPGPGALP 61
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 30.8 bits (68), Expect = 1.8
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 12/67 (17%)
Query: 51 ISQLQAELRRPPPAPAQPPEPEALPTIYVVTPTYARLVQKAELVRLSQTLSL-VPRLHWL 109
++QL + PPP P PP P A P ++ + R S+T + V RL W
Sbjct: 788 LTQLSHPVPPPPPPPLPPPVPCAPP-----------MLSRGLGHRRSETSHMSVKRLRWE 836
Query: 110 LVEDAEG 116
VE++EG
Sbjct: 837 QVENSEG 843
>gi|125988400 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 1 [Homo sapiens]
Length = 598
Score = 30.8 bits (68), Expect = 1.8
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 LYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQA-ELRRPP--PAPAQPPEPEALPTI 77
LYA V+ QP D + AA +D+ +QL + LRR P P+Q EP A P+I
Sbjct: 532 LYAAVKDTQPEDGVEMDTRAAASEAPQDVTYAQLHSLTLRRKATEPPPSQEREPPAEPSI 591
Query: 78 Y 78
Y
Sbjct: 592 Y 592
>gi|125988398 leukocyte immunoglobulin-like receptor, subfamily B,
member 2 isoform 2 [Homo sapiens]
Length = 597
Score = 30.8 bits (68), Expect = 1.8
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
Query: 21 LYALVQLGQPCDCLPPLRAAAEQLRQKDLRISQLQA-ELRRPP--PAPAQPPEPEALPTI 77
LYA V+ QP D + AA +D+ +QL + LRR P P+Q EP A P+I
Sbjct: 531 LYAAVKDTQPEDGVEMDTRAAASEAPQDVTYAQLHSLTLRRKATEPPPSQEREPPAEPSI 590
Query: 78 Y 78
Y
Sbjct: 591 Y 591
>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
[Homo sapiens]
Length = 2000
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 34 LPPLRAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIY 78
+PP+ AA Q+ ++ + +S+L ++ P P PA PP P A P Y
Sbjct: 1889 IPPI-AARLQMSERSI-LSRLASKGTEPHPTPAYPPGPYATPPGY 1931
>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
[Homo sapiens]
Length = 1966
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 34 LPPLRAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIY 78
+PP+ AA Q+ ++ + +S+L ++ P P PA PP P A P Y
Sbjct: 1855 IPPI-AARLQMSERSI-LSRLASKGTEPHPTPAYPPGPYATPPGY 1897
>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
[Homo sapiens]
Length = 2059
Score = 30.8 bits (68), Expect = 1.8
Identities = 17/45 (37%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 34 LPPLRAAAEQLRQKDLRISQLQAELRRPPPAPAQPPEPEALPTIY 78
+PP+ AA Q+ ++ + +S+L ++ P P PA PP P A P Y
Sbjct: 1948 IPPI-AARLQMSERSI-LSRLASKGTEPHPTPAYPPGPYATPPGY 1990
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.138 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,869,882
Number of Sequences: 37866
Number of extensions: 862397
Number of successful extensions: 6611
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 6201
Number of HSP's gapped (non-prelim): 440
length of query: 335
length of database: 18,247,518
effective HSP length: 103
effective length of query: 232
effective length of database: 14,347,320
effective search space: 3328578240
effective search space used: 3328578240
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.