Guide to the Human Genome
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Name: LOC100293536 Sequence: fasta or formatted (278aa) NCBI GI: 239752942
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.5         32           3
 C cysteine            2.2          6           1
 D aspartate           0.7          2           1
 E glutamate           4.7         13           1
 F phenylalanine       1.4          4           1
 G glycine             9.7         27           2
 H histidine           4.0         11           2
 I isoleucine          2.5          7           1
 K lysine              2.9          8           2
 L leucine            11.5         32           3
 M methionine          1.1          3           1
 N asparagine          1.1          3           1
 P proline            12.9         36           2
 Q glutamine           3.6         10           1
 R arginine           12.2         34           2
 S serine              4.7         13           2
 T threonine           5.8         16           1
 V valine              4.7         13           2
 W tryptophan          2.2          6           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291150          1.000   PREDICTED: hypothetical protein XP_002347543 
LOC100289439          1.000   PREDICTED: hypothetical protein XP_002342180 
LOC100129852          0.029   PREDICTED: hypothetical protein 
LOC100129852          0.029   PREDICTED: hypothetical protein 
LOC100129852          0.029   PREDICTED: hypothetical protein 
GLTSCR1               0.027   glioma tumor suppressor candidate region gene 1 [Ho...
B3GAT3                0.020   beta-1,3-glucuronyltransferase 3 
LOC729175             0.018   PREDICTED: hypothetical protein 
LOC729175             0.018   PREDICTED: hypothetical protein 
LOC729175             0.018   PREDICTED: hypothetical protein 
SMARCC2               0.018   SWI/SNF-related matrix-associated actin-dependent re...
YLPM1                 0.018   YLP motif containing 1 
BCORL1                0.018   BCL6 co-repressor-like 1 
SEC23IP               0.016   Sec23-interacting protein p125 
SF1                   0.016   splicing factor 1 isoform 3 
SF1                   0.016   splicing factor 1 isoform 2 
SF1                   0.016   splicing factor 1 isoform 1 
NACA                  0.016   nascent polypeptide-associated complex alpha subuni...
FOXN4                 0.014   forkhead box N4 
SMARCC2               0.014   SWI/SNF-related matrix-associated actin-dependent re...
NPW                   0.014   neuropeptide W preproprotein 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein FLJ22184 
FLJ22184              0.014   PREDICTED: hypothetical protein LOC80164 
LOC729378             0.014   PREDICTED: hypothetical protein 
LOC729378             0.014   PREDICTED: hypothetical protein 
LOC729378             0.014   PREDICTED: hypothetical protein 
ABI1                  0.014   abl-interactor 1 isoform c 
SFRS15                0.014   splicing factor, arginine/serine-rich 15 isoform 3 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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