Search of human proteins with 122937418

Search of human proteins with 122937418

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|122937418 similar to poly(A)binding protein nuclear-like 1
[Homo sapiens]
         (289 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|122937418 similar to poly(A)binding protein nuclear-like 1 [H...   601   e-172
gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]          179   3e-45
gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]     62   8e-10
gi|226497734 RNA binding motif protein 19 [Homo sapiens]               52   5e-07
gi|226497654 RNA binding motif protein 19 [Homo sapiens]               52   5e-07
gi|226497574 RNA binding motif protein 19 [Homo sapiens]               52   5e-07
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]        51   1e-06
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ...    50   2e-06
gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo s...    48   9e-06
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s...    48   9e-06
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s...    48   9e-06
gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo sap...    48   9e-06
gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]           47   1e-05
gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]          47   1e-05
gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b ...    47   2e-05
gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d ...    47   2e-05
gi|109809739 La ribonucleoprotein domain family, member 7 [Homo ...    47   2e-05
gi|109809741 La ribonucleoprotein domain family, member 7 [Homo ...    47   2e-05
gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo...    46   4e-05
gi|25121978 deleted in azoospermia-like [Homo sapiens]                 45   6e-05
gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform ...    45   6e-05
gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform ...    45   6e-05
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi...    44   1e-04
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]          44   2e-04
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]          44   2e-04
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]     44   2e-04
gi|153252068 testes-specific heterogenous nuclear ribonucleoprot...    44   2e-04
gi|187960109 RNA binding motif protein 28 [Homo sapiens]               44   2e-04
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    43   3e-04
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom...    43   3e-04

>gi|122937418 similar to poly(A)binding protein nuclear-like 1 [Homo
           sapiens]
          Length = 289

 Score =  601 bits (1550), Expect = e-172
 Identities = 289/289 (100%), Positives = 289/289 (100%)

Query: 1   MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED 60
           MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED
Sbjct: 1   MWPFPSRSLFPPPTQAWLQTVSSDPEAQGWGAWNETKEILGPEGGEGKEEKEEEEDAEED 60

Query: 61  QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA 120
           QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA
Sbjct: 61  QDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAEGTPRPPGVQQQAEEEEGTA 120

Query: 121 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC 180
           AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC
Sbjct: 121 AGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILC 180

Query: 181 DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH 240
           DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH
Sbjct: 181 DKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGH 240

Query: 241 PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK 289
           PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK
Sbjct: 241 PGSRGAPFPHSGLQGRPRLRPQGQNRTPAALTPLWARPLPWVVVSHVIK 289


>gi|4758876 poly(A) binding protein, nuclear 1 [Homo sapiens]
          Length = 306

 Score =  179 bits (453), Expect = 3e-45
 Identities = 111/240 (46%), Positives = 144/240 (60%), Gaps = 26/240 (10%)

Query: 41  GPEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQA 100
           GP  G G    +EEE+     +GD G            +  + D ELEAIK +V  ME  
Sbjct: 85  GPGPGSGAPGSQEEEEEPGLVEGDPG------------DGAIEDPELEAIKARVREME-- 130

Query: 101 EGTPRPPGVQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSA 160
           E   +   +Q + E++   +      P   G P+  + EEK+EAD RS+YVGNVDYG +A
Sbjct: 131 EEAEKLKELQNEVEKQMNMSP----PPGNAG-PVIMSIEEKMEADARSIYVGNVDYGATA 185

Query: 161 EELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVL 220
           EELEAHF  CG V+RVTILCDKFSGHPKG+AYIEF+ K SV+ ++ LD+SLFRGR IKV+
Sbjct: 186 EELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLALDESLFRGRQIKVI 245

Query: 221 PKRTNFPGISSTDRGGLRGHPGSRGAPFP------HSGLQGRPRLRP-QGQNRTPAALTP 273
           PKRTN PGIS+TDRG  R    +R   +       +SG   RPR R  +G+ R  +  +P
Sbjct: 246 PKRTNRPGISTTDRGFPRARYRARTTNYNSSRSRFYSGFNSRPRGRVYRGRARATSWYSP 305


>gi|238859597 RNA binding motif protein 34 isoform 1 [Homo sapiens]
          Length = 430

 Score = 61.6 bits (148), Expect = 8e-10
 Identities = 31/81 (38%), Positives = 45/81 (55%)

Query: 140 EKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKG 199
           E    D RSV+VGN+ Y      +E HF  CG +  V I+ DK +G  KG+ Y+ F    
Sbjct: 280 ETSSRDKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTD 339

Query: 200 SVQAAVELDQSLFRGRVIKVL 220
           SV  A++L+ S   GR ++V+
Sbjct: 340 SVHLALKLNNSELMGRKLRVM 360


>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 134 LSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYI 193
           L    EE+  A+   ++V N+ Y  + E+LE  FS+ G +  +    D  +  PKG+A+I
Sbjct: 389 LGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448

Query: 194 EFA-TKGSVQAAVELDQSLFRGRVIKVLP 221
            F   + +V+A  E+D  +F+GR++ VLP
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRMLHVLP 477


>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 134 LSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYI 193
           L    EE+  A+   ++V N+ Y  + E+LE  FS+ G +  +    D  +  PKG+A+I
Sbjct: 389 LGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448

Query: 194 EFA-TKGSVQAAVELDQSLFRGRVIKVLP 221
            F   + +V+A  E+D  +F+GR++ VLP
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRMLHVLP 477


>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
          Length = 960

 Score = 52.4 bits (124), Expect = 5e-07
 Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)

Query: 134 LSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYI 193
           L    EE+  A+   ++V N+ Y  + E+LE  FS+ G +  +    D  +  PKG+A+I
Sbjct: 389 LGENEEEEDLAESGRLFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFI 448

Query: 194 EFA-TKGSVQAAVELDQSLFRGRVIKVLP 221
            F   + +V+A  E+D  +F+GR++ VLP
Sbjct: 449 TFMFPEHAVKAYSEVDGQVFQGRMLHVLP 477


>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
          Length = 577

 Score = 50.8 bits (120), Expect = 1e-06
 Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 142 VEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSV 201
           V+   RSV+VGN+ Y  + E+L+  FS  G V    ++ D+ +G PKGY + E+  + + 
Sbjct: 11  VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 70

Query: 202 QAAV-ELDQSLFRGRVIKV 219
            +A+  L+   F GR ++V
Sbjct: 71  LSAMRNLNGREFSGRALRV 89


>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
           64kDa, tau variant [Homo sapiens]
          Length = 616

 Score = 50.4 bits (119), Expect = 2e-06
 Identities = 26/74 (35%), Positives = 44/74 (59%), Gaps = 1/74 (1%)

Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAV- 205
           RSV+VGN+ Y  + E+L+  FS  G V    ++ D+ +G PKGY + E+  + +  +A+ 
Sbjct: 16  RSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMR 75

Query: 206 ELDQSLFRGRVIKV 219
            L+   F GR ++V
Sbjct: 76  NLNGREFSGRALRV 89


>gi|253970504 Ewing sarcoma breakpoint region 1 isoform 4 [Homo
           sapiens]
          Length = 600

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)

Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
           P+E  ++D+ ++YV  ++   + ++L   F +CG V          + I  DK +G PKG
Sbjct: 298 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 355

Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
            A + +    + +AAVE  D   F+G  +KV   R   P   ++ RGGL    G RG P 
Sbjct: 356 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 412

Query: 249 PHSGLQGRP 257
           P  G  G P
Sbjct: 413 PLRGGPGGP 421


>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
           sapiens]
          Length = 655

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)

Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
           P+E  ++D+ ++YV  ++   + ++L   F +CG V          + I  DK +G PKG
Sbjct: 353 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 410

Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
            A + +    + +AAVE  D   F+G  +KV   R   P   ++ RGGL    G RG P 
Sbjct: 411 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 467

Query: 249 PHSGLQGRP 257
           P  G  G P
Sbjct: 468 PLRGGPGGP 476


>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
           sapiens]
          Length = 661

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)

Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
           P+E  ++D+ ++YV  ++   + ++L   F +CG V          + I  DK +G PKG
Sbjct: 359 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 416

Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
            A + +    + +AAVE  D   F+G  +KV   R   P   ++ RGGL    G RG P 
Sbjct: 417 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 473

Query: 249 PHSGLQGRP 257
           P  G  G P
Sbjct: 474 PLRGGPGGP 482


>gi|4885225 Ewing sarcoma breakpoint region 1 isoform 2 [Homo
           sapiens]
          Length = 656

 Score = 48.1 bits (113), Expect = 9e-06
 Identities = 41/129 (31%), Positives = 63/129 (48%), Gaps = 14/129 (10%)

Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFSGHPKG 189
           P+E  ++D+ ++YV  ++   + ++L   F +CG V          + I  DK +G PKG
Sbjct: 354 PDE--DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 411

Query: 190 YAYIEFATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPF 248
            A + +    + +AAVE  D   F+G  +KV   R   P   ++ RGGL    G RG P 
Sbjct: 412 DATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP--MNSMRGGLPPREG-RGMPP 468

Query: 249 PHSGLQGRP 257
           P  G  G P
Sbjct: 469 PLRGGPGGP 477


>gi|4507353 TBP-associated factor 15 isoform 2 [Homo sapiens]
          Length = 589

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 16/135 (11%)

Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFS 184
           P +    E   +D+ +++V  +  G S +++   F + G +          + +  DK +
Sbjct: 217 PRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDT 276

Query: 185 GHPKGYAYIEFATKGSVQAAVE-LDQSLFRGRVIKV--LPKRTNFPGISSTDRGGLRGHP 241
           G PKG A + F    S +AA++  D   F G +IKV    +R  F        GG RG  
Sbjct: 277 GKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPEFMR-GGGSGGGRRGRG 335

Query: 242 GSRGAPFPHSGLQGR 256
           G RG      G QGR
Sbjct: 336 GYRG----RGGFQGR 346


>gi|21327701 TBP-associated factor 15 isoform 1 [Homo sapiens]
          Length = 592

 Score = 47.4 bits (111), Expect = 1e-05
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 16/135 (11%)

Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR--------VTILCDKFS 184
           P +    E   +D+ +++V  +  G S +++   F + G +          + +  DK +
Sbjct: 220 PRTDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDT 279

Query: 185 GHPKGYAYIEFATKGSVQAAVE-LDQSLFRGRVIKV--LPKRTNFPGISSTDRGGLRGHP 241
           G PKG A + F    S +AA++  D   F G +IKV    +R  F        GG RG  
Sbjct: 280 GKPKGEATVSFDDPPSAKAAIDWFDGKEFHGNIIKVSFATRRPEFMR-GGGSGGGRRGRG 338

Query: 242 GSRGAPFPHSGLQGR 256
           G RG      G QGR
Sbjct: 339 GYRG----RGGFQGR 349


>gi|14110417 heterogeneous nuclear ribonucleoprotein D isoform b
           [Homo sapiens]
          Length = 336

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 118 GTAAGQLL--SPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR 175
           GTA+G     S E+ G  +  +   K E D   +++G + +  + ++L+ +FS+ GEV  
Sbjct: 50  GTASGGTEGGSAESEGAKIDAS---KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVD 106

Query: 176 VTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKR 223
            T+  D  +G  +G+ ++ F    SV   ++  +    G+VI   PKR
Sbjct: 107 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID--PKR 152



 Score = 34.7 bits (78), Expect = 0.10
 Identities = 45/237 (18%), Positives = 90/237 (37%), Gaps = 23/237 (9%)

Query: 41  GPEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQA 100
           G EGG  + E  + + ++ ++D    F+  L    +  +  L D   +  ++  C ++  
Sbjct: 55  GTEGGSAESEGAKIDASKNEEDEGKMFIGGL--SWDTTKKDLKDYFSKFGEVVDCTLKLD 112

Query: 101 EGTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSV 149
             T R  G           V +  +++E    G+++ P+      +  P +K+       
Sbjct: 113 PITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKI------- 165

Query: 150 YVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVEL-- 207
           +VG +      E++  +F   GEV  + +  D  +   +G+ +I F  +  V+  +E   
Sbjct: 166 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 225

Query: 208 -DQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQGRPRLRPQG 263
            +  L +  +   + K           RGG  G    RG     +  QG      QG
Sbjct: 226 HNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRGGGPSQNWNQGYSNYWNQG 282


>gi|51477708 heterogeneous nuclear ribonucleoprotein D isoform d
           [Homo sapiens]
          Length = 287

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 118 GTAAGQLL--SPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHR 175
           GTA+G     S E+ G  +  +   K E D   +++G + +  + ++L+ +FS+ GEV  
Sbjct: 50  GTASGGTEGGSAESEGAKIDAS---KNEEDEGKMFIGGLSWDTTKKDLKDYFSKFGEVVD 106

Query: 176 VTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKR 223
            T+  D  +G  +G+ ++ F    SV   ++  +    G+VI   PKR
Sbjct: 107 CTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVID--PKR 152



 Score = 33.9 bits (76), Expect = 0.17
 Identities = 41/219 (18%), Positives = 85/219 (38%), Gaps = 23/219 (10%)

Query: 41  GPEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQA 100
           G EGG  + E  + + ++ ++D    F+  L    +  +  L D   +  ++  C ++  
Sbjct: 55  GTEGGSAESEGAKIDASKNEEDEGKMFIGGL--SWDTTKKDLKDYFSKFGEVVDCTLKLD 112

Query: 101 EGTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSV 149
             T R  G           V +  +++E    G+++ P+      +  P +K+       
Sbjct: 113 PITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKI------- 165

Query: 150 YVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVEL-- 207
           +VG +      E++  +F   GEV  + +  D  +   +G+ +I F  +  V+  +E   
Sbjct: 166 FVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKY 225

Query: 208 -DQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245
            +  L +  +   + K           RGG  G    RG
Sbjct: 226 HNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAGRARGRG 264


>gi|109809739 La ribonucleoprotein domain family, member 7 [Homo
           sapiens]
          Length = 582

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAY 192
           PL   P+++   D R+VYV  +    +   +E  F +CG V  ++I   K +G PKG+A+
Sbjct: 114 PLGERPKDE---DERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAF 170

Query: 193 IEFATKGSVQAAVE 206
           +EF TK     A+E
Sbjct: 171 VEFETKEQAAKAIE 184


>gi|109809741 La ribonucleoprotein domain family, member 7 [Homo
           sapiens]
          Length = 582

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 3/74 (4%)

Query: 133 PLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAY 192
           PL   P+++   D R+VYV  +    +   +E  F +CG V  ++I   K +G PKG+A+
Sbjct: 114 PLGERPKDE---DERTVYVELLPKNVNHSWIERVFGKCGNVVYISIPHYKSTGDPKGFAF 170

Query: 193 IEFATKGSVQAAVE 206
           +EF TK     A+E
Sbjct: 171 VEFETKEQAAKAIE 184


>gi|14110407 heterogeneous nuclear ribonucleoprotein D-like [Homo
           sapiens]
          Length = 420

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 2/83 (2%)

Query: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
           K + D   +++G + +  S ++L  + SR GEV   TI  D  +G  +G+ ++ F    S
Sbjct: 142 KNQQDDGKMFIGGLSWDTSKKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAAS 201

Query: 201 VQAAVELDQSLFRGRVIKVLPKR 223
           V   +EL +    G++I   PKR
Sbjct: 202 VDKVLELKEHKLDGKLID--PKR 222



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 17/159 (10%)

Query: 109 VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFS 168
           V +  E +E    G+L+ P+         P +KV       +VG +    S E+++ +F 
Sbjct: 202 VDKVLELKEHKLDGKLIDPKRAKALKGKEPPKKV-------FVGGLSPDTSEEQIKEYFG 254

Query: 169 RCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD-QSLFRGRV-IKVLPKRTNF 226
             GE+  + +  D  +   +G+ +I +  +  V+  +E     +  G+  IKV   +  +
Sbjct: 255 AFGEIENIELPMDTKTNERRGFCFITYTDEEPVKKLLESRYHQIGSGKCEIKVAQPKEVY 314

Query: 227 PGISSTDRGGLRGHPGSRGAPFPHSGLQGRPRLRPQGQN 265
                  +GG     G RG      G +GR   R QGQN
Sbjct: 315 RQQQQQQKGGRGAAAGGRG------GTRGRG--RGQGQN 345


>gi|25121978 deleted in azoospermia-like [Homo sapiens]
          Length = 295

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 29/84 (34%), Positives = 45/84 (53%), Gaps = 4/84 (4%)

Query: 138 PEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFAT 197
           PE K+  +  +V+VG +D      E+ + F+R G V  V I+ D+ +G  KGY ++ F  
Sbjct: 33  PEGKIMPN--TVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFFN 89

Query: 198 KGSVQAAVELDQSLFRGRVIKVLP 221
              VQ  VE  Q  F G+ +K+ P
Sbjct: 90  DVDVQKIVE-SQINFHGKKLKLGP 112


>gi|55956921 heterogeneous nuclear ribonucleoprotein A/B isoform b
           [Homo sapiens]
          Length = 285

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 24/77 (31%), Positives = 42/77 (54%)

Query: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
           K E D   ++VG + +  S ++L+ +F++ GEV   TI  D  +G  +G+ +I F    S
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 201 VQAAVELDQSLFRGRVI 217
           V+  ++  +    GRVI
Sbjct: 124 VEKVLDQKEHRLDGRVI 140



 Score = 32.0 bits (71), Expect = 0.65
 Identities = 30/176 (17%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 42  PEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAE 101
           P G +   E ++   ++ ++D    F+  L    + ++  L D   +  ++  C ++   
Sbjct: 48  PSGNQNGAEGDQINASKNEEDAGKMFVGGL--SWDTSKKDLKDYFTKFGEVVDCTIKMDP 105

Query: 102 GTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVY 150
            T R  G           V++  +++E    G+++ P+     +   P +K+       +
Sbjct: 106 NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA-MAMKKDPVKKI-------F 157

Query: 151 VGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
           VG ++   + E++  +F   GE+  + +  D      +G+ +I F  +  V+  +E
Sbjct: 158 VGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213


>gi|55956919 heterogeneous nuclear ribonucleoprotein A/B isoform a
           [Homo sapiens]
          Length = 332

 Score = 45.4 bits (106), Expect = 6e-05
 Identities = 24/77 (31%), Positives = 42/77 (54%)

Query: 141 KVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
           K E D   ++VG + +  S ++L+ +F++ GEV   TI  D  +G  +G+ +I F    S
Sbjct: 64  KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAAS 123

Query: 201 VQAAVELDQSLFRGRVI 217
           V+  ++  +    GRVI
Sbjct: 124 VEKVLDQKEHRLDGRVI 140



 Score = 32.0 bits (71), Expect = 0.65
 Identities = 30/176 (17%), Positives = 74/176 (42%), Gaps = 21/176 (11%)

Query: 42  PEGGEGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCAMEQAE 101
           P G +   E ++   ++ ++D    F+  L    + ++  L D   +  ++  C ++   
Sbjct: 48  PSGNQNGAEGDQINASKNEEDAGKMFVGGL--SWDTSKKDLKDYFTKFGEVVDCTIKMDP 105

Query: 102 GTPRPPG-----------VQQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVY 150
            T R  G           V++  +++E    G+++ P+     +   P +K+       +
Sbjct: 106 NTGRSRGFGFILFKDAASVEKVLDQKEHRLDGRVIDPKKA-MAMKKDPVKKI-------F 157

Query: 151 VGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
           VG ++   + E++  +F   GE+  + +  D      +G+ +I F  +  V+  +E
Sbjct: 158 VGGLNPEATEEKIREYFGEFGEIEAIELPMDPKLNKRRGFVFITFKEEEPVKKVLE 213


>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
           sapiens]
          Length = 437

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 11/101 (10%)

Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
           ++++V  V+Y  +  +L   F   G + R+ ++  K SG P+GYA+IE+  +  + +A +
Sbjct: 103 KTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYK 162

Query: 207 -----------LDQSLFRGRVIKVLPKRTNFPGISSTDRGG 236
                      +   + RGR +K    R    G+  T RGG
Sbjct: 163 HADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGG 203


>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
          Length = 378

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
           ++VG + +     EL  +F + G V  V ++ D     P+G+ +I F  + SV  AV + 
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174

Query: 209 QSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHP--GSRGAPFPHSGLQGRP 257
                G+ ++V  KR   P  S +   G  G    GSR  P   +G  G+P
Sbjct: 175 FHDIMGKKVEV--KRAE-PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/73 (27%), Positives = 36/73 (49%)

Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
           ++VG +D+  + E L ++FS+ GEV    I+ DK +   +G+ +++F     V   +   
Sbjct: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71

Query: 209 QSLFRGRVIKVLP 221
                GR I   P
Sbjct: 72  PHTLDGRNIDPKP 84


>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
          Length = 407

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
           ++VG + +     EL  +F + G V  V ++ D     P+G+ +I F  + SV  AV + 
Sbjct: 115 IFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVNMH 174

Query: 209 QSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHP--GSRGAPFPHSGLQGRP 257
                G+ ++V  KR   P  S +   G  G    GSR  P   +G  G+P
Sbjct: 175 FHDIMGKKVEV--KRAE-PRDSKSQAPGQPGASQWGSRVVPNAANGWAGQP 222



 Score = 38.9 bits (89), Expect = 0.005
 Identities = 20/73 (27%), Positives = 36/73 (49%)

Query: 149 VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELD 208
           ++VG +D+  + E L ++FS+ GEV    I+ DK +   +G+ +++F     V   +   
Sbjct: 12  LFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLASR 71

Query: 209 QSLFRGRVIKVLP 221
                GR I   P
Sbjct: 72  PHTLDGRNIDPKP 84


>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
          Length = 221

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 5/133 (3%)

Query: 136 GTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEF 195
           G P   VE    S+ V N+ Y  S + L   F + G V  V I  D+++   +G+A++ F
Sbjct: 4   GRPPPDVEG-MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRF 62

Query: 196 ATKGSVQAAVE-LDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQ 254
             K   + A++ +D ++  GR ++V   R   P  S   R   RG P  R     +    
Sbjct: 63  HDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSR---RGPPPRRYGGGGYGRRS 119

Query: 255 GRPRLRPQGQNRT 267
             PR R + ++R+
Sbjct: 120 RSPRRRRRSRSRS 132


>gi|153252068 testes-specific heterogenous nuclear ribonucleoprotein
           G-T [Homo sapiens]
          Length = 392

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 32/116 (27%), Positives = 57/116 (49%), Gaps = 6/116 (5%)

Query: 142 VEADHRS-VYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGS 200
           VEAD    +++G ++     + LEA F + G +  V ++ D+ +   +G+A++ F +   
Sbjct: 2   VEADRPGKLFIGGLNLETDEKALEAEFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPAD 61

Query: 201 VQAAV-ELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRGAPFPHSGLQG 255
            +AA  +++     G+ IKV   +   P   S+ RG     P SRG P    G +G
Sbjct: 62  AKAAARDMNGKSLDGKAIKV--AQATKPAFESSRRG--PPPPRSRGRPRFLRGTRG 113


>gi|187960109 RNA binding motif protein 28 [Homo sapiens]
          Length = 759

 Score = 43.9 bits (102), Expect = 2e-04
 Identities = 40/178 (22%), Positives = 73/178 (41%), Gaps = 29/178 (16%)

Query: 46  EGKEEKEEEEDAEEDQDGDAGFLLSLLEQENLAECPLPDQELEAIKMKVCA----MEQAE 101
           +G+EE++ EE+  +D D D      + + E        D+E E I+ KV       ++A 
Sbjct: 221 KGREEEDMEEEENDDDDDDDDEEDGVFDDE--------DEEEENIESKVTKPVQIQKRAV 272

Query: 102 GTPRPPGVQQQAEEEEGTAAGQLLSP--------------ETVGCPLSGTPEEKVEAD-- 145
             P P      +EE+        +                E     +S   + K+ +D  
Sbjct: 273 KRPAPAKSSDHSEEDSDLEESDSIDDGEELAQSDTSTEEQEDKAVQVSNKKKRKLPSDVN 332

Query: 146 -HRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQ 202
             ++V++ N+ +    EEL     + GE+  V I+    + H KG A+ +F T+ + Q
Sbjct: 333 EGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQ 390



 Score = 36.2 bits (82), Expect = 0.034
 Identities = 21/72 (29%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 148 SVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVEL 207
           +++VG +     +E+LE  FS+ G V +  ++ +K S   +G+ Y+ F+    VQ A++ 
Sbjct: 5   TLFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALK- 63

Query: 208 DQSLFRGRVIKV 219
           + + F G  I V
Sbjct: 64  EITTFEGCKINV 75


>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
           + ++VG +        L  +F + G++  + I+ D+ SG  +G+A++ F    SV   V 
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164

Query: 207 LDQSLFRG---RVIKVLPKRTNFPGISSTDRG--GLRGHPGSRGAPFPHSGLQGR 256
                 +G    V K LPK+      SS+ RG  G     G RG  F  +   GR
Sbjct: 165 QKYHTVKGHNCEVRKALPKQ-EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGR 218



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIE 194
           S +P+E  +   R +++G + +  + E L +HF + G +    ++ D  +   +G+ ++ 
Sbjct: 4   SASPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61

Query: 195 FATKGSVQAAVELDQSLFRGRVIKVLPKR 223
           +AT   V AA+        GRV++  PKR
Sbjct: 62  YATVEEVDAAMNTTPHKVDGRVVE--PKR 88


>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
           sapiens]
          Length = 320

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 147 RSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVE 206
           + ++VG +        L  +F + G++  + I+ D+ SG  +G+A++ F    SV   V 
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164

Query: 207 LDQSLFRG---RVIKVLPKRTNFPGISSTDRG--GLRGHPGSRGAPFPHSGLQGR 256
                 +G    V K LPK+      SS+ RG  G     G RG  F  +   GR
Sbjct: 165 QKYHTVKGHNCEVRKALPKQ-EMASASSSQRGRRGSGNFGGGRGDGFGGNDNFGR 218



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 23/89 (25%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 135 SGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIE 194
           S +P+E  +   R +++G + +  + E L +HF + G +    ++ D  +   +G+ ++ 
Sbjct: 4   SASPKEPEQL--RKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVT 61

Query: 195 FATKGSVQAAVELDQSLFRGRVIKVLPKR 223
           +AT   V AA+        GRV++  PKR
Sbjct: 62  YATVEEVDAAMNTTPHKVDGRVVE--PKR 88


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.134    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,929,452
Number of Sequences: 37866
Number of extensions: 873424
Number of successful extensions: 8898
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 263
Number of HSP's that attempted gapping in prelim test: 5831
Number of HSP's gapped (non-prelim): 2119
length of query: 289
length of database: 18,247,518
effective HSP length: 101
effective length of query: 188
effective length of database: 14,423,052
effective search space: 2711533776
effective search space used: 2711533776
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.