Guide to the Human Genome
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Name: SLC13A4 Sequence: fasta or formatted (626aa) NCBI GI: 31795546
Description:

solute carrier family 13 (sodium/sulfate symporters), member 4

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         40           3
 C cysteine            2.4         15           2
 D aspartate           1.9         12           1
 E glutamate           5.4         34           2
 F phenylalanine       5.1         32           3
 G glycine             5.8         36           3
 H histidine           2.1         13           2
 I isoleucine          6.2         39           2
 K lysine              5.3         33           4
 L leucine            12.9         81           4
 M methionine          3.2         20           1
 N asparagine          4.6         29           2
 P proline             5.8         36           2
 Q glutamine           3.0         19           1
 R arginine            2.1         13           1
 S serine              8.0         50           2
 T threonine           6.5         41           2
 V valine              8.6         54           2
 W tryptophan          2.4         15           1
 Y tyrosine            2.2         14           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 13 (sodium/sulfate symporters)... 
SLC13A1               0.453   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A5               0.371   solute carrier family 13, member 5 isoform a 
SLC13A2               0.366   solute carrier family 13, member 2 isoform b 
SLC13A2               0.347   solute carrier family 13, member 2 isoform a 
SLC13A3               0.345   solute carrier family 13 member 3 isoform a 
SLC13A3               0.325   solute carrier family 13 member 3 isoform b 
SLC13A2               0.313   solute carrier family 13, member 2 isoform c 
SLC13A5               0.307   solute carrier family 13, member 5 isoform b 
OCA2                  0.025   oculocutaneous albinism II 
BAZ2B                 0.008   bromodomain adjacent to zinc finger domain, 2B [Homo...
PTPRO                 0.006   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.006   receptor-type protein tyrosine phosphatase O isoform ...
RDH10                 0.006   retinol dehydrogenase 10 
GPR68                 0.006   G protein-coupled receptor 68 
NLRP4                 0.006   NLR family, pyrin domain containing 4 
KIAA1024              0.006   hypothetical protein LOC23251 
MLL5                  0.006   myeloid/lymphoid or mixed-lineage leukemia 5 
MLL5                  0.006   myeloid/lymphoid or mixed-lineage leukemia 5 
RIF1                  0.006   RAP1 interacting factor 1 
ARHGAP15              0.005   ARHGAP15 
TRDN                  0.005   triadin 
ZFYVE9                0.005   zinc finger, FYVE domain containing 9 isoform 1 [Hom...
ZFYVE9                0.005   zinc finger, FYVE domain containing 9 isoform 3 [Hom...
ZFYVE9                0.005   zinc finger, FYVE domain containing 9 isoform 2 [Homo...
FKBP15                0.005   FK506 binding protein 15, 133kDa 
MTNR1A                0.004   melatonin receptor 1A 
CREG2                 0.004   cellular repressor of E1A-stimulated genes 2 
ZMYM5                 0.004   zinc finger protein 237 isoform 3 
PCDHGB5               0.004   protocadherin gamma subfamily B, 5 isoform 2 precurs...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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