Guide to the Human Genome
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Name: SLC13A2 Sequence: fasta or formatted (592aa) NCBI GI: 4506979
Description:

solute carrier family 13, member 2 isoform b

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt prot [641aa] solute carrier family 13, member 2 isoform a
alt prot [549aa] solute carrier family 13, member 2 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.1         60           2
 C cysteine            1.9         11           1
 D aspartate           1.5          9           1
 E glutamate           3.5         21           2
 F phenylalanine       6.1         36           2
 G glycine             6.1         36           3
 H histidine           1.7         10           1
 I isoleucine          7.3         43           2
 K lysine              3.0         18           1
 L leucine            15.2         90           4
 M methionine          3.2         19           2
 N asparagine          4.4         26           2
 P proline             6.8         40           2
 Q glutamine           3.9         23           3
 R arginine            1.7         10           1
 S serine              7.3         43           2
 T threonine           5.9         35           3
 V valine              6.4         38           2
 W tryptophan          2.5         15           1
 Y tyrosine            1.5          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 13, member 2 isoform b 
SLC13A2               0.980   solute carrier family 13, member 2 isoform a 
SLC13A2               0.901   solute carrier family 13, member 2 isoform c 
SLC13A5               0.522   solute carrier family 13, member 5 isoform a 
SLC13A5               0.444   solute carrier family 13, member 5 isoform b 
SLC13A1               0.426   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A3               0.416   solute carrier family 13 member 3 isoform a 
SLC13A4               0.391   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A3               0.387   solute carrier family 13 member 3 isoform b 
OCA2                  0.018   oculocutaneous albinism II 
TSC22D1               0.005   TSC22 domain family, member 1 isoform 1 
MEAF6                 0.004   MYST/Esa1-associated factor 6 
MEF2D                 0.004   myocyte enhancer factor 2D 
SLC19A3               0.004   solute carrier family 19, member 3 
ARSH                  0.004   arylsulfatase family, member H 
HHAT                  0.004   hedgehog acyltransferase 
HHAT                  0.004   hedgehog acyltransferase 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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