Guide to the Human Genome
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Name: PTPRO Sequence: fasta or formatted (1188aa) NCBI GI: 4506323
Description:

receptor-type protein tyrosine phosphatase O isoform b precursor

Referenced in:

Protein Tyrosine Phosphatases

Other entries for this name:
alt prot [1216aa] receptor-type protein tyrosine phosphatase O isoform a precursor
alt prot [377aa] receptor-type protein tyrosine phosphatase O isoform d precursor
alt prot [405aa] receptor-type protein tyrosine phosphatase O isoform c precursor
alt prot [377aa] receptor-type protein tyrosine phosphatase O isoform d precursor
alt prot [405aa] receptor-type protein tyrosine phosphatase O isoform c precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         58           2
 C cysteine            1.4         17           2
 D aspartate           3.9         46           2
 E glutamate           7.0         83           3
 F phenylalanine       5.1         60           2
 G glycine             4.1         49           1
 H histidine           2.4         29           1
 I isoleucine          5.7         68           2
 K lysine              5.4         64           3
 L leucine             7.9         94           3
 M methionine          2.8         33           1
 N asparagine          4.6         55           2
 P proline             6.0         71           3
 Q glutamine           3.7         44           2
 R arginine            3.3         39           2
 S serine              9.6        114           3
 T threonine           7.4         88           2
 V valine              8.4        100           3
 W tryptophan          1.9         23           2
 Y tyrosine            4.5         53           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   receptor-type protein tyrosine phosphatase O isoform ... 
PTPRO                 0.994   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.313   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.313   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.307   receptor-type protein tyrosine phosphatase O isoform...
PTPRO                 0.307   receptor-type protein tyrosine phosphatase O isoform...
PTPRB                 0.118   protein tyrosine phosphatase, receptor type, B isof...
PTPRB                 0.118   protein tyrosine phosphatase, receptor type, B isof...
PTPRQ                 0.109   protein tyrosine phosphatase, receptor type, Q [Hom...
PTPRJ                 0.108   protein tyrosine phosphatase, receptor type, J isof...
PTPRH                 0.106   protein tyrosine phosphatase, receptor type, H isof...
PTPRH                 0.106   protein tyrosine phosphatase, receptor type, H isof...
PTPRF                 0.085   protein tyrosine phosphatase, receptor type, F isof...
PTPRF                 0.085   protein tyrosine phosphatase, receptor type, F isof...
PTPRD                 0.084   protein tyrosine phosphatase, receptor type, D isofor...
PTPRD                 0.084   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.084   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.084   protein tyrosine phosphatase, receptor type, D isofo...
PTPRD                 0.083   protein tyrosine phosphatase, receptor type, D isof...
PTPRS                 0.083   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.083   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.083   protein tyrosine phosphatase, receptor type, sigma ...
PTPRS                 0.083   protein tyrosine phosphatase, receptor type, sigma ...
PTPRT                 0.082   protein tyrosine phosphatase, receptor type, T isof...
PTPRT                 0.082   protein tyrosine phosphatase, receptor type, T isof...
PTPRC                 0.082   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.082   protein tyrosine phosphatase, receptor type, C isofo...
PTPRC                 0.082   protein tyrosine phosphatase, receptor type, C isofo...
PTPRM                 0.081   protein tyrosine phosphatase, receptor type, M isof...
PTPRM                 0.081   protein tyrosine phosphatase, receptor type, M isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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