Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: SLC13A2 Sequence: fasta or formatted (549aa) NCBI GI: 225637552
Description:

solute carrier family 13, member 2 isoform c

Referenced in:

Kidney
Solute Carrier Families

Other entries for this name:
alt prot [641aa] solute carrier family 13, member 2 isoform a
alt prot [592aa] solute carrier family 13, member 2 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.5         52           2
 C cysteine            1.6          9           1
 D aspartate           1.5          8           1
 E glutamate           3.3         18           2
 F phenylalanine       6.0         33           2
 G glycine             6.4         35           3
 H histidine           1.8         10           1
 I isoleucine          7.1         39           2
 K lysine              3.3         18           1
 L leucine            15.1         83           4
 M methionine          2.9         16           2
 N asparagine          4.7         26           2
 P proline             6.7         37           2
 Q glutamine           4.2         23           3
 R arginine            1.8         10           1
 S serine              7.7         42           2
 T threonine           6.0         33           3
 V valine              6.6         36           2
 W tryptophan          2.6         14           1
 Y tyrosine            1.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 13, member 2 isoform c 
SLC13A2               0.981   solute carrier family 13, member 2 isoform b 
SLC13A2               0.936   solute carrier family 13, member 2 isoform a 
SLC13A5               0.493   solute carrier family 13, member 5 isoform a 
SLC13A5               0.408   solute carrier family 13, member 5 isoform b 
SLC13A1               0.400   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A3               0.381   solute carrier family 13 member 3 isoform b 
SLC13A3               0.381   solute carrier family 13 member 3 isoform a 
SLC13A4               0.362   solute carrier family 13 (sodium/sulfate symporters)...
OCA2                  0.020   oculocutaneous albinism II 
TSC22D1               0.006   TSC22 domain family, member 1 isoform 1 
MEAF6                 0.005   MYST/Esa1-associated factor 6 
MEF2D                 0.005   myocyte enhancer factor 2D 
SLC19A3               0.005   solute carrier family 19, member 3 
ARSH                  0.005   arylsulfatase family, member H 
DOCK4                 0.005   dedicator of cytokinesis 4 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press