Guide to the Human Genome
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Name: ZMYM5 Sequence: fasta or formatted (669aa) NCBI GI: 218083730
Description:

zinc finger protein 237 isoform 3

Referenced in:

Zinc Finger Proteins

Other entries for this name:
alt prot [382aa] zinc finger protein 237 isoform 1
alt prot [208aa] zinc finger protein 237 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         30           2
 C cysteine            3.6         24           2
 D aspartate           4.6         31           7
 E glutamate           6.9         46           2
 F phenylalanine       3.9         26           1
 G glycine             5.1         34           2
 H histidine           2.1         14           2
 I isoleucine          4.9         33           2
 K lysine              9.1         61           2
 L leucine             7.9         53           3
 M methionine          1.5         10           2
 N asparagine          7.6         51           2
 P proline             4.9         33           2
 Q glutamine           4.9         33           3
 R arginine            3.7         25           1
 S serine             10.9         73           2
 T threonine           6.3         42           2
 V valine              4.5         30           2
 W tryptophan          0.9          6           1
 Y tyrosine            2.1         14           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 237 isoform 3 
ZMYM5                 0.506   zinc finger protein 237 isoform 1 
ZMYM2                 0.295   zinc finger protein 198 
ZMYM2                 0.295   zinc finger protein 198 
ZMYM5                 0.277   zinc finger protein 237 isoform 2 
ZMYM3                 0.101   zinc finger protein 261 
ZMYM3                 0.101   zinc finger protein 261 
ZMYM4                 0.101   zinc finger protein 262 
ZMYM1                 0.092   zinc finger, MYM domain containing 1 
ZMYM6                 0.070   zinc finger protein 258 
ZNF195                0.010   zinc finger protein 195 isoform 2 
ZNF195                0.010   zinc finger protein 195 isoform 1 
ZNF195                0.010   zinc finger protein 195 isoform 3 
ZNF770                0.010   zinc finger protein 770 
PHC1                  0.009   polyhomeotic 1-like 
RXRA                  0.008   retinoid X receptor, alpha 
ZNF840                0.007   PREDICTED: zinc finger protein 840 
ZNF840                0.007   PREDICTED: zinc finger protein 840 
ZNF840                0.007   PREDICTED: zinc finger protein 840 
DDX1                  0.007   DEAD (Asp-Glu-Ala-Asp) box polypeptide 1 
RABEP2                0.007   rabaptin, RAB GTPase binding effector protein 2 [Ho...
ZNF254                0.007   zinc finger protein 254 
ZNF90                 0.006   zinc finger protein 90 
ZNF81                 0.006   zinc finger protein 81 
ZNF341                0.006   zinc finger protein 341 
ZNF407                0.006   zinc finger protein 407 isoform 3 
ZNF407                0.006   zinc finger protein 407 isoform 2 
ZNF407                0.006   zinc finger protein 407 isoform 1 
FEZF1                 0.005   FEZ family zinc finger 1 isoform 2 
FEZF1                 0.005   FEZ family zinc finger 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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