Guide to the Human Genome
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Name: SLC13A5 Sequence: fasta or formatted (568aa) NCBI GI: 29171306
Description:

solute carrier family 13, member 5 isoform a

Referenced in:

Solute Carrier Families

Other entries for this name:
alt prot [522aa] solute carrier family 13, member 5 isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.2         52           2
 C cysteine            1.9         11           1
 D aspartate           2.3         13           1
 E glutamate           4.6         26           3
 F phenylalanine       6.9         39           2
 G glycine             5.8         33           3
 H histidine           0.9          5           1
 I isoleucine          5.6         32           2
 K lysine              5.1         29           2
 L leucine            13.6         77           4
 M methionine          4.4         25           2
 N asparagine          3.0         17           1
 P proline             5.8         33           3
 Q glutamine           2.8         16           2
 R arginine            2.6         15           1
 S serine              5.3         30           1
 T threonine           6.5         37           3
 V valine              9.0         51           2
 W tryptophan          2.8         16           1
 Y tyrosine            1.9         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   solute carrier family 13, member 5 isoform a 
SLC13A5               0.898   solute carrier family 13, member 5 isoform b 
SLC13A2               0.543   solute carrier family 13, member 2 isoform b 
SLC13A2               0.523   solute carrier family 13, member 2 isoform a 
SLC13A2               0.474   solute carrier family 13, member 2 isoform c 
SLC13A3               0.467   solute carrier family 13 member 3 isoform a 
SLC13A3               0.438   solute carrier family 13 member 3 isoform b 
SLC13A1               0.419   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A4               0.412   solute carrier family 13 (sodium/sulfate symporters)...
OCA2                  0.010   oculocutaneous albinism II 
ARSH                  0.007   arylsulfatase family, member H 
OR5H2                 0.007   olfactory receptor, family 5, subfamily H, member 2 ...
FTSJ3                 0.004   FtsJ homolog 3 
METTL14               0.004   methyltransferase like 14 
FAM38A                0.004   family with sequence similarity 38, member A 
LMBRD2                0.004   LMBR1 domain containing 2 
KCNJ5                 0.004   potassium inwardly-rectifying channel J5 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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