Guide to the Human Genome
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Name: OCA2 Sequence: fasta or formatted (838aa) NCBI GI: 157266326
Description:

oculocutaneous albinism II

Referenced in:

Skin and Related Tissues
Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.4         79           2
 C cysteine            1.8         15           1
 D aspartate           3.0         25           1
 E glutamate           5.7         48           2
 F phenylalanine       4.5         38           2
 G glycine             6.3         53           2
 H histidine           3.2         27           1
 I isoleucine          6.3         53           2
 K lysine              2.3         19           2
 L leucine            14.6        122           3
 M methionine          2.6         22           2
 N asparagine          2.5         21           1
 P proline             4.3         36           2
 Q glutamine           3.2         27           2
 R arginine            6.1         51           2
 S serine              7.6         64           3
 T threonine           4.5         38           2
 V valine              8.0         67           3
 W tryptophan          2.0         17           1
 Y tyrosine            1.9         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   oculocutaneous albinism II 
SLC13A4               0.019   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A1               0.017   solute carrier family 13 (sodium/sulfate symporters)...
SLC13A2               0.013   solute carrier family 13, member 2 isoform c 
SLC13A2               0.013   solute carrier family 13, member 2 isoform b 
SLC13A2               0.013   solute carrier family 13, member 2 isoform a 
TMEM64                0.007   transmembrane protein 64 isoform 2 
TMEM64                0.007   transmembrane protein 64 isoform 1 
SLC13A5               0.007   solute carrier family 13, member 5 isoform a 
INVS                  0.007   inversin isoform a 
FAM125A               0.006   family with sequence similarity 125, member A 
LOC389174             0.005   PREDICTED: hypothetical protein 
LOC389174             0.005   PREDICTED: hypothetical protein 
LOC389174             0.005   PREDICTED: hypothetical protein 
BLM                   0.005   Bloom syndrome protein 
SHROOM2               0.005   apical protein of Xenopus-like 
LOC100290140          0.004   PREDICTED: hypothetical protein XP_002346786 
LOC100288414          0.004   PREDICTED: hypothetical protein XP_002342651 
ADSSL1                0.004   adenylosuccinate synthase like 1 isoform 1 
TTBK2                 0.004   tau tubulin kinase 2 
SFRS16                0.004   splicing factor, arginine/serine-rich 16 
LOC100131397          0.003   PREDICTED: hypothetical protein 
LOC100131397          0.003   PREDICTED: hypothetical protein 
LOC100131397          0.003   PREDICTED: hypothetical protein 
LOC731275             0.003   PREDICTED: similar to Putative uncharacterized prot...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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