Guide to the Human Genome
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Name: TRIT1 Sequence: fasta or formatted (467aa) NCBI GI: 31581534
Description:

tRNA isopentenyltransferase 1

Referenced in:

tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         27           3
 C cysteine            1.3          6           1
 D aspartate           5.4         25           2
 E glutamate           7.9         37           2
 F phenylalanine       2.6         12           1
 G glycine             6.6         31           3
 H histidine           3.6         17           2
 I isoleucine          5.8         27           3
 K lysine              7.5         35           2
 L leucine            10.1         47           2
 M methionine          1.5          7           1
 N asparagine          3.9         18           1
 P proline             4.5         21           2
 Q glutamine           5.1         24           1
 R arginine            6.4         30           3
 S serine              6.6         31           1
 T threonine           4.3         20           1
 V valine              7.7         36           2
 W tryptophan          1.1          5           1
 Y tyrosine            2.4         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tRNA isopentenyltransferase 1 
MATR3                 0.009   matrin 3 
MATR3                 0.009   matrin 3 
RBM20                 0.009   RNA binding motif protein 20 
MAP1S                 0.008   BPY2 interacting protein 1 
ZFR                   0.008   zinc finger RNA binding protein 
ZC3H7A                0.008   zinc finger CCCH-type containing 7A 
GPATCH8               0.008   G patch domain containing 8 
ZNF407                0.008   zinc finger protein 407 isoform 3 
ZNF407                0.008   zinc finger protein 407 isoform 2 
KIF5B                 0.008   kinesin family member 5B 
ZNF407                0.008   zinc finger protein 407 isoform 1 
RFC2                  0.008   replication factor C 2 isoform 1 
CIZ1                  0.008   CDKN1A interacting zinc finger protein 1 isoform 4 ...
CIZ1                  0.008   CDKN1A interacting zinc finger protein 1 isoform 3 ...
CIZ1                  0.008   CDKN1A interacting zinc finger protein 1 isoform 1 ...
CIZ1                  0.008   CDKN1A interacting zinc finger protein 1 isoform 2 ...
CIZ1                  0.008   CDKN1A interacting zinc finger protein 1 isoform 1 [...
CCDC41                0.008   NY-REN-58 antigen 
CCDC41                0.008   NY-REN-58 antigen 
PDE6C                 0.007   phosphodiesterase 6C 
PET112L               0.007   PET112-like 
ZC3H7B                0.007   zinc finger CCCH-type containing 7B 
EIF4G3                0.007   eukaryotic translation initiation factor 4 gamma, 3 ...
THNSL1                0.007   threonine synthase-like 1 
TAF9                  0.005   TAF9 RNA polymerase II, TATA box binding protein-asso...
ZNF346                0.005   zinc finger protein 346 
WBP2                  0.005   WW domain binding protein 2 
CDCA2                 0.005   cell division cycle associated 2 
NLRP14                0.005   NLR family, pyrin domain containing 14 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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