Guide to the Human Genome
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Name: ZC3H7A Sequence: fasta or formatted (971aa) NCBI GI: 27414497
Description:

zinc finger CCCH-type containing 7A

Referenced in:

Tetratricopeptide Domains
Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         58           2
 C cysteine            3.4         33           1
 D aspartate           4.9         48           2
 E glutamate           7.8         76           3
 F phenylalanine       4.4         43           2
 G glycine             5.3         51           2
 H histidine           3.2         31           1
 I isoleucine          4.6         45           2
 K lysine              7.7         75           2
 L leucine             8.4         82           3
 M methionine          2.6         25           1
 N asparagine          5.7         55           2
 P proline             5.1         50           3
 Q glutamine           4.0         39           2
 R arginine            4.8         47           2
 S serine              8.5         83           3
 T threonine           3.8         37           2
 V valine              4.8         47           2
 W tryptophan          1.3         13           1
 Y tyrosine            3.4         33           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger CCCH-type containing 7A 
ZC3H7B                0.430   zinc finger CCCH-type containing 7B 
UNC45A                0.019   smooth muscle cell associated protein-1 isoform 2 [H...
UNC45B                0.018   cardiomyopathy associated 4 isoform 2 
UNC45B                0.018   cardiomyopathy associated 4 isoform 1 
UNC45A                0.018   smooth muscle cell associated protein-1 isoform 3 [H...
TOMM34                0.015   translocase of outer mitochondrial membrane 34 [Homo...
PPID                  0.015   peptidylprolyl isomerase D 
PRIC285               0.015   PPAR-alpha interacting complex protein 285 isoform ...
TOMM70A               0.014   translocase of outer mitochondrial membrane 70 homol...
SPAG1                 0.014   sperm associated antigen 1 
SPAG1                 0.014   sperm associated antigen 1 
STIP1                 0.014   stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizi...
LONRF3                0.013   LON peptidase N-terminal domain and ring finger 3 is...
SGTA                  0.010   small glutamine-rich tetratricopeptide 
SGTB                  0.010   small glutamine-rich tetratricopeptide repeat (TPR)-...
DNAJC21               0.009   DnaJ homology subfamily A member 5 isoform 1 
TTC28                 0.009   tetratricopeptide repeat domain 28 
DNAJC7                0.009   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
MUC17                 0.009   mucin 17 
DNAJC7                0.009   DnaJ (Hsp40) homolog, subfamily C, member 7 isoform...
DNAJC21               0.009   DnaJ homology subfamily A member 5 isoform 2 
RPAP3                 0.008   RNA polymerase II associated protein 3 isoform 2 [H...
RPAP3                 0.008   RNA polymerase II associated protein 3 isoform 1 [H...
TTC9                  0.007   tetratricopeptide repeat domain 9 
WDTC1                 0.007   WD and tetratricopeptide repeats 1 
TTC12                 0.007   tetratricopeptide repeat domain 12 
FKBP8                 0.007   FK506-binding protein 8 
FKBP5                 0.007   FK506 binding protein 5 isoform 1 
FKBP5                 0.007   FK506 binding protein 5 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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