Guide to the Human Genome
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Name: PET112L Sequence: fasta or formatted (557aa) NCBI GI: 4758894
Description:

PET112-like

Referenced in:

Oxidative Phosphorylation
tRNA Enzymes

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         43           2
 C cysteine            1.4          8           1
 D aspartate           3.6         20           1
 E glutamate           7.0         39           2
 F phenylalanine       2.7         15           2
 G glycine             6.5         36           2
 H histidine           2.5         14           2
 I isoleucine          5.0         28           1
 K lysine              5.7         32           2
 L leucine            11.7         65           2
 M methionine          2.3         13           1
 N asparagine          4.5         25           1
 P proline             5.0         28           2
 Q glutamine           6.8         38           2
 R arginine            6.1         34           2
 S serine              7.4         41           3
 T threonine           4.5         25           1
 V valine              7.0         39           2
 W tryptophan          0.9          5           1
 Y tyrosine            1.6          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PET112-like 
NOD2                  0.007   nucleotide-binding oligomerization domain containing...
TRIT1                 0.006   tRNA isopentenyltransferase 1 
ATR                   0.005   ataxia telangiectasia and Rad3 related protein [Hom...
LOC651921             0.005   PREDICTED: similar to ataxia telangiectasia and Rad...
DHX38                 0.005   DEAH (Asp-Glu-Ala-His) box polypeptide 38 
TPX2                  0.005   TPX2, microtubule-associated protein homolog 
PRAGMIN               0.005   pragmin 
STAT6                 0.004   signal transducer and activator of transcription 6 [...
AMPH                  0.004   amphiphysin isoform 2 
AMPH                  0.004   amphiphysin isoform 1 
UBR4                  0.004   retinoblastoma-associated factor 600 
CCDC123               0.004   coiled-coil domain containing 123 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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