Guide to the Human Genome
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Name: ZNF407 Sequence: fasta or formatted (2248aa) NCBI GI: 134133288
Description:

zinc finger protein 407 isoform 1

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [1815aa] zinc finger protein 407 isoform 2
alt prot [1660aa] zinc finger protein 407 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7        150           4
 C cysteine            3.5         78           2
 D aspartate           4.4         98           2
 E glutamate           9.5        214           3
 F phenylalanine       2.9         66           2
 G glycine             7.2        161           3
 H histidine           4.8        108           1
 I isoleucine          3.6         82           2
 K lysine              6.9        154           4
 L leucine             7.6        171           2
 M methionine          2.3         51           2
 N asparagine          4.0         90           2
 P proline             3.8         85           3
 Q glutamine           4.8        109           2
 R arginine            4.5        102           3
 S serine              9.8        221           3
 T threonine           5.9        133           3
 V valine              6.1        137           4
 W tryptophan          0.1          3           1
 Y tyrosine            1.6         35           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 407 isoform 1 
ZNF407                0.816   zinc finger protein 407 isoform 2 
ZNF407                0.724   zinc finger protein 407 isoform 3 
ZNF93                 0.042   zinc finger protein 93 
ZNF624                0.042   zinc finger protein 624 
ZNF33B                0.042   zinc finger protein 33B 
ZNF778                0.042   zinc finger protein 778 
ZNF235                0.041   zinc finger protein 93 homolog 
ZNF85                 0.041   zinc finger protein 85 
ZNF699                0.041   zinc finger protein 699 
ZNF160                0.041   zinc finger protein 160 
ZNF595                0.041   zinc finger protein 595 
ZNF160                0.041   zinc finger protein 160 
ZNF160                0.041   zinc finger protein 160 
ZNF91                 0.040   zinc finger protein 91 
ZNF568                0.040   zinc finger protein 568 
LOC388559             0.040   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.040   PREDICTED: similar to hCG1778601 isoform 1 
LOC388559             0.040   PREDICTED: hypothetical protein LOC388559 
ZSCAN2                0.040   zinc finger protein 29 isoform 1 
ZNF737                0.040   PREDICTED: zinc finger protein 737 
ZNF737                0.040   PREDICTED: zinc finger protein 737 
ZNF737                0.040   PREDICTED: zinc finger protein 737 
ZNF354A               0.040   zinc finger protein 354A 
ZNF347                0.040   zinc finger protein 347 
ZNF234                0.040   zinc finger protein 234 
ZNF234                0.040   zinc finger protein 234 
ZNF470                0.040   zinc finger protein 470 
ZNF585A               0.040   zinc finger protein 585A 
ZNF585A               0.040   zinc finger protein 585A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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