Guide to the Human Genome
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Name: USP49 Sequence: fasta or formatted (640aa) NCBI GI: 21361749
Description:

ubiquitin thioesterase 49

Referenced in:

Ubiquitin and Related Protein Modifications

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         43           2
 C cysteine            4.1         26           2
 D aspartate           3.3         21           1
 E glutamate           7.3         47           2
 F phenylalanine       3.3         21           1
 G glycine             5.3         34           2
 H histidine           3.3         21           2
 I isoleucine          2.5         16           1
 K lysine              5.8         37           2
 L leucine            12.8         82           3
 M methionine          2.0         13           1
 N asparagine          3.1         20           1
 P proline             4.7         30           2
 Q glutamine           4.8         31           2
 R arginine            9.7         62           5
 S serine              6.9         44           2
 T threonine           5.3         34           2
 V valine              5.0         32           2
 W tryptophan          1.6         10           1
 Y tyrosine            2.5         16           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin thioesterase 49 
USP44                 0.572   ubiquitin thiolesterase 44 
USP44                 0.572   ubiquitin thiolesterase 44 
USP3                  0.113   ubiquitin thiolesterase 3 
USP2                  0.066   ubiquitin specific peptidase 2 isoform b 
USP2                  0.066   ubiquitin specific peptidase 2 isoform a 
USP8                  0.063   ubiquitin specific peptidase 8 
USP8                  0.063   ubiquitin specific peptidase 8 
USP8                  0.063   ubiquitin specific peptidase 8 
USP27X                0.062   X-linked ubiquitin thioesterase 27 
USP22                 0.062   ubiquitin thiolesterase 22 
USP51                 0.061   ubiquitin specific protease 51 
USP20                 0.050   ubiquitin specific protease 20 
USP20                 0.050   ubiquitin specific protease 20 
USP20                 0.050   ubiquitin specific protease 20 
USP50                 0.050   ubiquitin specific protease 50 
USP46                 0.048   ubiquitin specific peptidase 46 isoform 2 
USP46                 0.048   ubiquitin specific peptidase 46 isoform 1 
USP48                 0.048   ubiquitin specific protease 48 isoform b 
USP48                 0.048   ubiquitin specific protease 48 isoform a 
USP12                 0.047   ubiquitin thiolesterase 12 
USP42                 0.046   ubiquitin specific peptidase 42 
USP21                 0.045   ubiquitin-specific protease 21 
USP21                 0.045   ubiquitin-specific protease 21 
USP36                 0.043   ubiquitin specific peptidase 36 
USP15                 0.041   ubiquitin specific peptidase 15 
USP16                 0.040   ubiquitin specific protease 16 isoform b 
USP16                 0.040   ubiquitin specific protease 16 isoform a 
USP16                 0.040   ubiquitin specific protease 16 isoform a 
USP6                  0.038   ubiquitin specific protease 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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