Guide to the Human Genome
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Name: USP46 Sequence: fasta or formatted (366aa) NCBI GI: 31377709
Description:

ubiquitin specific peptidase 46 isoform 1

Referenced in:

Ubiquitin and Related Protein Modifications

Other entries for this name:
alt prot [359aa] ubiquitin specific peptidase 46 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         17           1
 C cysteine            3.6         13           2
 D aspartate           5.2         19           3
 E glutamate           7.9         29           2
 F phenylalanine       5.2         19           1
 G glycine             3.8         14           1
 H histidine           2.7         10           1
 I isoleucine          5.2         19           1
 K lysine              7.9         29           3
 L leucine            10.4         38           2
 M methionine          2.2          8           1
 N asparagine          7.4         27           2
 P proline             2.7         10           2
 Q glutamine           4.9         18           2
 R arginine            4.4         16           1
 S serine              6.0         22           2
 T threonine           5.5         20           1
 V valine              5.5         20           3
 W tryptophan          0.5          2           1
 Y tyrosine            4.4         16           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ubiquitin specific peptidase 46 isoform 1 
USP46                 0.971   ubiquitin specific peptidase 46 isoform 2 
USP12                 0.886   ubiquitin thiolesterase 12 
USP3                  0.156   ubiquitin thiolesterase 3 
USP22                 0.149   ubiquitin thiolesterase 22 
USP8                  0.145   ubiquitin specific peptidase 8 
USP8                  0.145   ubiquitin specific peptidase 8 
USP8                  0.145   ubiquitin specific peptidase 8 
USP42                 0.138   ubiquitin specific peptidase 42 
USP36                 0.131   ubiquitin specific peptidase 36 
USP2                  0.131   ubiquitin specific peptidase 2 isoform b 
USP2                  0.131   ubiquitin specific peptidase 2 isoform a 
USP51                 0.128   ubiquitin specific protease 51 
LOC100288520          0.127   PREDICTED: hypothetical protein XP_002342486 
USP48                 0.127   ubiquitin specific protease 48 isoform b 
USP48                 0.127   ubiquitin specific protease 48 isoform a 
USP21                 0.127   ubiquitin-specific protease 21 
USP21                 0.127   ubiquitin-specific protease 21 
USP27X                0.124   X-linked ubiquitin thioesterase 27 
LOC728379             0.124   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
USP17L5               0.123   PREDICTED: Ubiquitin carboxyl-terminal hydrolase 17...
LOC100287404          0.123   PREDICTED: hypothetical protein XP_002342477 
LOC100287364          0.123   PREDICTED: hypothetical protein XP_002342476 
LOC100287178          0.123   PREDICTED: hypothetical protein XP_002342472 
LOC728373             0.121   PREDICTED: similar to deubiquitinating enzyme DUB1 ...
LOC728419             0.121   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728405             0.121   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728400             0.121   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728393             0.121   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
LOC728379             0.121   PREDICTED: similar to deubiquitinating enzyme 1 [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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