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Search of human proteins with 31543906
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
(422 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens] 863 0.0
gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo s... 551 e-157
gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo ... 499 e-141
gi|223555979 probable ubiquitin-conjugating enzyme E2 FLJ25076 [... 178 7e-45
gi|33359694 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens] 44 4e-04
gi|5454146 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens] 44 4e-04
gi|60498973 myelin transcription factor 1-like [Homo sapiens] 44 4e-04
gi|163660385 ubiquitin-conjugating enzyme E2K isoform 2 [Homo sa... 43 5e-04
gi|4885417 ubiquitin-conjugating enzyme E2K isoform 1 [Homo sapi... 43 5e-04
gi|154355000 KH-type splicing regulatory protein [Homo sapiens] 43 5e-04
gi|22749327 ubiquitin-conjugating enzyme E2E 2 [Homo sapiens] 41 0.002
gi|145301543 ubiquitin-conjugating enzyme E2W (putative) isoform... 41 0.002
gi|47933381 ubiquitin-conjugating enzyme E2W (putative) isoform ... 41 0.002
gi|169210053 PREDICTED: hypothetical protein [Homo sapiens] 40 0.003
gi|50428940 mediator complex subunit 25 [Homo sapiens] 40 0.005
gi|168229174 RNA binding motif protein 27 [Homo sapiens] 40 0.005
gi|165905613 ring finger and KH domain containing 1 [Homo sapiens] 40 0.005
gi|239751555 PREDICTED: functional smad suppressing element 18 [... 39 0.007
gi|239746067 PREDICTED: functional smad suppressing element 18 [... 39 0.007
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 0.007
gi|149158690 HLA-B associated transcript-2 [Homo sapiens] 39 0.012
gi|19923345 RNA binding motif protein 12 [Homo sapiens] 39 0.012
gi|23510462 RNA binding motif protein 12 [Homo sapiens] 39 0.012
gi|110347449 POU domain, class 4, transcription factor 1 [Homo s... 39 0.012
gi|7706501 WW domain binding protein 11 [Homo sapiens] 39 0.012
gi|12707580 paired-like homeobox 2b [Homo sapiens] 38 0.015
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H... 38 0.020
gi|194363768 homeobox D9 [Homo sapiens] 38 0.020
gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens] 38 0.020
gi|87299628 biorientation of chromosomes in cell division 1-like... 38 0.020
>gi|31543906 ubiquitin-conjugating enzyme E2Q [Homo sapiens]
Length = 422
Score = 863 bits (2229), Expect = 0.0
Identities = 422/422 (100%), Positives = 422/422 (100%)
Query: 1 MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFR 60
MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFR
Sbjct: 1 MQQPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFR 60
Query: 61 IASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPGDPVRIHCNITESYPAVPPIWS 120
IASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPGDPVRIHCNITESYPAVPPIWS
Sbjct: 61 IASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPGDPVRIHCNITESYPAVPPIWS 120
Query: 121 VESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC 180
VESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC
Sbjct: 121 VESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQC 180
Query: 181 TQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQD 240
TQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQD
Sbjct: 181 TQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQD 240
Query: 241 YLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALH 300
YLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALH
Sbjct: 241 YLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALH 300
Query: 301 NDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGW 360
NDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGW
Sbjct: 301 NDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGW 360
Query: 361 SSAYSIESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKE 420
SSAYSIESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKE
Sbjct: 361 SSAYSIESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKE 420
Query: 421 DG 422
DG
Sbjct: 421 DG 422
>gi|29789401 ubiquitin-conjugating enzyme E2Q 2 isoform 1 [Homo
sapiens]
Length = 375
Score = 551 bits (1419), Expect = e-157
Identities = 286/386 (74%), Positives = 319/386 (82%), Gaps = 20/386 (5%)
Query: 41 LRRELKLLESIFHRGHERFRIASACLDELSCEFLLAGAGGAGAGAAPGPH-LPPRGSVPG 99
L+ ELK L SIF + HERFRI S LDEL C+FL+ G PH LPP
Sbjct: 6 LKAELKFLASIFDKNHERFRIVSWKLDELHCQFLVPQQGS--------PHSLPP------ 51
Query: 100 DPVRIHCNITESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKL 159
P+ +HCNITESYP+ PIW V+S+DPNL +VLERL D K N LL Q LK +I +LC L
Sbjct: 52 -PLTLHCNITESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNN-LLRQQLKWLICELCSL 109
Query: 160 YNLPQHPDVEMLDQPLPAEQC-TQEDVSSEDEDEE--MPEDTEDLDHYEMKEEEPAEGKK 216
YNLP+H DVEMLDQPLP Q T E+V+SE+E+EE M ED EDLDHYEMKEEEP GKK
Sbjct: 110 YNLPKHLDVEMLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKK 169
Query: 217 SEDDGIGKENLAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAV 276
SED+GI KENLAILEKI+K QRQD+LNGAVSGSVQA+DRLMKELRDIYRSQS+K G Y+V
Sbjct: 170 SEDEGIEKENLAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSV 229
Query: 277 ELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVS 336
EL+NDSLYDW+VKL KVD DS LH+DLQILKEKEG ++ILLNFSFKDNFPFDPPFVRVV
Sbjct: 230 ELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVL 289
Query: 337 PVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQYSLT 396
PVLSGGYVLGGGA+CMELLTKQGWSSAYSIESVIMQI+ATLVKGKARVQFGANK+QY+L
Sbjct: 290 PVLSGGYVLGGGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA 349
Query: 397 RAQQSYKSLVQIHEKNGWYTPPKEDG 422
RAQQSY S+VQIHEKNGWYTPPKEDG
Sbjct: 350 RAQQSYNSIVQIHEKNGWYTPPKEDG 375
>gi|223890185 ubiquitin-conjugating enzyme E2Q 2 isoform 2 [Homo
sapiens]
Length = 359
Score = 499 bits (1284), Expect = e-141
Identities = 252/316 (79%), Positives = 279/316 (88%), Gaps = 4/316 (1%)
Query: 110 ESYPAVPPIWSVESDDPNLAAVLERLVDIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVE 169
ESYP+ PIW V+S+DPNL +VLERL D K N LL Q LK +I +LC LYNLP+H DVE
Sbjct: 45 ESYPSSSPIWFVDSEDPNLTSVLERLEDTKNNN-LLRQQLKWLICELCSLYNLPKHLDVE 103
Query: 170 MLDQPLPAEQC-TQEDVSSEDEDEE--MPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKEN 226
MLDQPLP Q T E+V+SE+E+EE M ED EDLDHYEMKEEEP GKKSED+GI KEN
Sbjct: 104 MLDQPLPTGQNGTTEEVTSEEEEEEEEMAEDIEDLDHYEMKEEEPISGKKSEDEGIEKEN 163
Query: 227 LAILEKIKKNQRQDYLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDW 286
LAILEKI+K QRQD+LNGAVSGSVQA+DRLMKELRDIYRSQS+K G Y+VEL+NDSLYDW
Sbjct: 164 LAILEKIRKTQRQDHLNGAVSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDW 223
Query: 287 NVKLLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLG 346
+VKL KVD DS LH+DLQILKEKEG ++ILLNFSFKDNFPFDPPFVRVV PVLSGGYVLG
Sbjct: 224 HVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLG 283
Query: 347 GGAICMELLTKQGWSSAYSIESVIMQISATLVKGKARVQFGANKSQYSLTRAQQSYKSLV 406
GGA+CMELLTKQGWSSAYSIESVIMQI+ATLVKGKARVQFGANK+QY+L RAQQSY S+V
Sbjct: 284 GGALCMELLTKQGWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIV 343
Query: 407 QIHEKNGWYTPPKEDG 422
QIHEKNGWYTPPKEDG
Sbjct: 344 QIHEKNGWYTPPKEDG 359
>gi|223555979 probable ubiquitin-conjugating enzyme E2 FLJ25076
[Homo sapiens]
Length = 161
Score = 178 bits (452), Expect = 7e-45
Identities = 93/169 (55%), Positives = 123/169 (72%), Gaps = 11/169 (6%)
Query: 257 MKELRDIYR-SQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEGADFI 315
MKEL+DI R S F +VELV++SL+DWNVKL +VD+DS L D++ + +FI
Sbjct: 1 MKELQDIARLSDRF----ISVELVDESLFDWNVKLHQVDKDSVLWQDMK----ETNTEFI 52
Query: 316 LLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIMQISA 375
LLN +F DNFPF PPF+RV+SP L GYVL GGAICMELLT +GWSSAY++E+V+ Q +A
Sbjct: 53 LLNLTFPDNFPFSPPFMRVLSPRLENGYVLDGGAICMELLTPRGWSSAYTVEAVMRQFAA 112
Query: 376 TLVKGKARV--QFGANKSQYSLTRAQQSYKSLVQIHEKNGWYTPPKEDG 422
+LVKG+ R+ + G +K +S A+ ++KSLV+ HEK GW TPP DG
Sbjct: 113 SLVKGQGRICRKAGKSKKSFSRKEAEATFKSLVKTHEKYGWVTPPVSDG 161
>gi|33359694 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens]
Length = 207
Score = 43.5 bits (101), Expect = 4e-04
Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 29/214 (13%)
Query: 187 SEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV 246
S+DE + D D + EP E ++ + + KKN + A
Sbjct: 8 SDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQ---------KKNTKLSSKTTAK 58
Query: 247 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL 306
+ + R+ KEL +I N + D++Y+W +L +++
Sbjct: 59 LST--SAKRIQKELAEITLDPP---PNCSAGPKGDNIYEWRSTIL--GPPGSVY------ 105
Query: 307 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI 366
EG F L + +F ++PF PP V + + + G IC+++L K WS A +I
Sbjct: 106 ---EGGVFFL-DITFSSDYPFKPPKVTFRTRIYHCN-INSQGVICLDIL-KDNWSPALTI 159
Query: 367 ESVIMQISATLVK-GKARVQFGANKSQYSLTRAQ 399
V++ I + L A G+ +QY RA+
Sbjct: 160 SKVLLSICSLLTDCNPADPLVGSIATQYLTNRAE 193
>gi|5454146 ubiquitin-conjugating enzyme E2E 3 [Homo sapiens]
Length = 207
Score = 43.5 bits (101), Expect = 4e-04
Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 29/214 (13%)
Query: 187 SEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKKNQRQDYLNGAV 246
S+DE + D D + EP E ++ + + KKN + A
Sbjct: 8 SDDESPSTSSGSSDADQRDPAAPEPEEQEERKPSATQQ---------KKNTKLSSKTTAK 58
Query: 247 SGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQIL 306
+ + R+ KEL +I N + D++Y+W +L +++
Sbjct: 59 LST--SAKRIQKELAEITLDPP---PNCSAGPKGDNIYEWRSTIL--GPPGSVY------ 105
Query: 307 KEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSI 366
EG F L + +F ++PF PP V + + + G IC+++L K WS A +I
Sbjct: 106 ---EGGVFFL-DITFSSDYPFKPPKVTFRTRIYHCN-INSQGVICLDIL-KDNWSPALTI 159
Query: 367 ESVIMQISATLVK-GKARVQFGANKSQYSLTRAQ 399
V++ I + L A G+ +QY RA+
Sbjct: 160 SKVLLSICSLLTDCNPADPLVGSIATQYLTNRAE 193
>gi|60498973 myelin transcription factor 1-like [Homo sapiens]
Length = 1184
Score = 43.5 bits (101), Expect = 4e-04
Identities = 35/124 (28%), Positives = 62/124 (50%), Gaps = 8/124 (6%)
Query: 182 QEDVSSEDEDE-EMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIKK----N 236
+E++ EDED+ E ED ED + E +EEE E +++ED + N I++ +K N
Sbjct: 132 EEEIEEEDEDDDEDGEDVEDEEEEEEEEEEEEEEEENEDHQMNCHNTRIMQDTEKDDNNN 191
Query: 237 QRQDYLNGAVSGSVQATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNV---KLLKV 293
D + V+ S+ ++ ++ R++S N + L +DS + N+ L +
Sbjct: 192 DEYDNYDELVAKSLLNLGKIAEDAAYRARTESEMNSNTSNSLEDDSDKNENLGRKSELSL 251
Query: 294 DQDS 297
D DS
Sbjct: 252 DLDS 255
Score = 29.6 bits (65), Expect = 5.4
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 163 PQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDL-DHYEMKEEEPAEGKKSEDDG 221
PQ P + + A+ + ++ D E+M E ED + Y +EP + + +++G
Sbjct: 68 PQEPAPKRKPFAVKADSSSVDECDDSDGTEDMDEKEEDEGEEYSEDNDEPGDEDEEDEEG 127
Query: 222 IGKENLAILEKIKKNQRQDYLNG 244
+E E+I++ D +G
Sbjct: 128 DREEE----EEIEEEDEDDDEDG 146
Score = 29.6 bits (65), Expect = 5.4
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 187 SEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKE 225
SED DE ED ED + + +EEE E + +DD G++
Sbjct: 111 SEDNDEPGDEDEED-EEGDREEEEEIEEEDEDDDEDGED 148
>gi|163660385 ubiquitin-conjugating enzyme E2K isoform 2 [Homo
sapiens]
Length = 157
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 252 ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEG 311
A R+ +E +++ +S+ V+LV+++ + ++ EG
Sbjct: 5 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPY-----------EG 53
Query: 312 ADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIM 371
+ L + +PF+PP VR ++ + GAIC+++L K W++A ++ +V++
Sbjct: 54 GRY-QLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLL 111
Query: 372 QISATL 377
+ A L
Sbjct: 112 SLQALL 117
>gi|4885417 ubiquitin-conjugating enzyme E2K isoform 1 [Homo
sapiens]
Length = 200
Score = 43.1 bits (100), Expect = 5e-04
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 252 ATDRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVKLLKVDQDSALHNDLQILKEKEG 311
A R+ +E +++ +S+ V+LV+++ + ++ EG
Sbjct: 5 AVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPY-----------EG 53
Query: 312 ADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGAICMELLTKQGWSSAYSIESVIM 371
+ L + +PF+PP VR ++ + GAIC+++L K W++A ++ +V++
Sbjct: 54 GRY-QLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDIL-KDQWAAAMTLRTVLL 111
Query: 372 QISATL 377
+ A L
Sbjct: 112 SLQALL 117
>gi|154355000 KH-type splicing regulatory protein [Homo sapiens]
Length = 711
Score = 43.1 bits (100), Expect = 5e-04
Identities = 32/99 (32%), Positives = 33/99 (33%), Gaps = 44/99 (44%)
Query: 8 GQQQPGPGQQLGGQGAAPGAGGGPGGGP-------GPGPCLRRELKLLESIFHRGHERFR 60
G PGP GG G A GAGGGP GP G GP
Sbjct: 7 GGPPPGPPPPAGGGGGAGGAGGGPPPGPPGAGDRGGGGP--------------------- 45
Query: 61 IASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVPG 99
G GG G G+A GP PP G PG
Sbjct: 46 ----------------GGGGPGGGSAGGPSQPPGGGGPG 68
Score = 32.0 bits (71), Expect = 1.1
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 12 PGPGQQLGGQGAAPGAGGGPGGGP-----GPGPCLRRE 44
PG G + GG G GGG GGP G GP +R++
Sbjct: 35 PGAGDRGGGGPGGGGPGGGSAGGPSQPPGGGGPGIRKD 72
>gi|22749327 ubiquitin-conjugating enzyme E2E 2 [Homo sapiens]
Length = 201
Score = 40.8 bits (94), Expect = 0.002
Identities = 39/171 (22%), Positives = 77/171 (45%), Gaps = 19/171 (11%)
Query: 231 EKIKKNQRQDYLNGAVSGSVQAT-DRLMKELRDIYRSQSFKGGNYAVELVNDSLYDWNVK 289
E+++ +++ ++ + + + R+ KEL +I N + D++Y+W
Sbjct: 34 EQVQPKKKEGKISSKTAAKLSTSAKRIQKELAEITLDPP---PNCSAGPKGDNIYEWRST 90
Query: 290 LLKVDQDSALHNDLQILKEKEGADFILLNFSFKDNFPFDPPFVRVVSPVLSGGYVLGGGA 349
+L +++ EG F L + +F ++PF PP V + + + G
Sbjct: 91 IL--GPPGSVY---------EGGVFFL-DITFSPDYPFKPPKVTFRTRIYHCN-INSQGV 137
Query: 350 ICMELLTKQGWSSAYSIESVIMQISATLVK-GKARVQFGANKSQYSLTRAQ 399
IC+++L K WS A +I V++ I + L A G+ +QY RA+
Sbjct: 138 ICLDIL-KDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAE 187
>gi|145301543 ubiquitin-conjugating enzyme E2W (putative) isoform 2
[Homo sapiens]
Length = 151
Score = 40.8 bits (94), Expect = 0.002
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 310 EGADFILLNFSFKDNFPFDPPFVRVVSP-VLSGGYVLGGGAICMELLTKQGWSSAYSIES 368
EG F LL F F +PFD P V + +V G IC+ +LT + WS A S++S
Sbjct: 50 EGEKFQLL-FKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT-EDWSPALSVQS 107
Query: 369 VIMQISATLVKGKAR 383
V + I + L K +
Sbjct: 108 VCLSIISMLSSCKEK 122
>gi|47933381 ubiquitin-conjugating enzyme E2W (putative) isoform 1
[Homo sapiens]
Length = 162
Score = 40.8 bits (94), Expect = 0.002
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 310 EGADFILLNFSFKDNFPFDPPFVRVVSP-VLSGGYVLGGGAICMELLTKQGWSSAYSIES 368
EG F LL F F +PFD P V + +V G IC+ +LT + WS A S++S
Sbjct: 61 EGEKFQLL-FKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILT-EDWSPALSVQS 118
Query: 369 VIMQISATLVKGKAR 383
V + I + L K +
Sbjct: 119 VCLSIISMLSSCKEK 133
>gi|169210053 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 40.4 bits (93), Expect = 0.003
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 137 DIKKGNTLLLQHLKRIISDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPE 196
D+ GN L + ++++ C Q LP E+ E+ E E+EE E
Sbjct: 90 DLSAGNRLSVARTAALVAEECSA------------QQGLPVEEEEVEEEEEEVEEEEKEE 137
Query: 197 DTEDLDHYEMKEEEPAEGKKSED-DGIGKENLAILEKIKKN-QRQDYL 242
+ E+ + E KEEE E ++ E+ +G E + E+I QR YL
Sbjct: 138 EKEEDEEEEEKEEEKEEDEEEEEKEGKKMEEEKVEEEIDTEIQRTQYL 185
Score = 33.1 bits (74), Expect = 0.49
Identities = 20/82 (24%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 175 LPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDGIGKENLAILEKIK 234
L AE+C+ + E+EE+ E+ E+++ E +EE+ + ++ E + +E+ EK
Sbjct: 105 LVAEECSAQQ-GLPVEEEEVEEEEEEVEEEEKEEEKEEDEEEEEKEEEKEEDEEEEEKEG 163
Query: 235 KNQRQDYLNGAVSGSVQATDRL 256
K ++ + + +Q T L
Sbjct: 164 KKMEEEKVEEEIDTEIQRTQYL 185
>gi|50428940 mediator complex subunit 25 [Homo sapiens]
Length = 747
Score = 39.7 bits (91), Expect = 0.005
Identities = 22/40 (55%), Positives = 22/40 (55%), Gaps = 7/40 (17%)
Query: 3 QPQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLR 42
QPQPQG QP PG G PGA GP P PGP LR
Sbjct: 604 QPQPQGTAQPPPGAPQG----PPGAASGP---PPPGPILR 636
>gi|168229174 RNA binding motif protein 27 [Homo sapiens]
Length = 1060
Score = 39.7 bits (91), Expect = 0.005
Identities = 20/40 (50%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
Query: 4 PQPQGQQQPGPGQQL----GGQGAAPGAGGGPGGGPGPGP 39
P P G P P L G G PG G GPG GPGPGP
Sbjct: 318 PPPPGLPPPPPPGMLMPPMPGPGPGPGPGPGPGPGPGPGP 357
Score = 37.7 bits (86), Expect = 0.020
Identities = 19/39 (48%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 4 PQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLR 42
P P P PG G G PG G GPG GPGPG +R
Sbjct: 327 PPPGMLMPPMPGP---GPGPGPGPGPGPGPGPGPGHSMR 362
Score = 33.9 bits (76), Expect = 0.29
Identities = 18/36 (50%), Positives = 18/36 (50%), Gaps = 6/36 (16%)
Query: 4 PQPQGQ---QQPGPGQQLGGQGAAPGAGGGPGGGPG 36
P P G PGPG G G PG G GPG GPG
Sbjct: 326 PPPPGMLMPPMPGPGP---GPGPGPGPGPGPGPGPG 358
>gi|165905613 ring finger and KH domain containing 1 [Homo sapiens]
Length = 651
Score = 39.7 bits (91), Expect = 0.005
Identities = 45/138 (32%), Positives = 51/138 (36%), Gaps = 25/138 (18%)
Query: 6 PQGQQQPGPGQQLGGQGAAPGAGG-GPGGGPGPGPCLRRELKLLESIFHRGHERFRIASA 64
P QP G GG G GA G PG GP P P +E +
Sbjct: 2 PSSLGQPDGGGGGGGGGGGVGAAGEDPGPGPAPPPEGAQEAAPAPRPPPEPDDAAAALRL 61
Query: 65 CLDELSCEFL---------------LAGAGGAGAGAAPGPHLPPRGSVPGDPVRIHCNIT 109
LD+LS L A AGGA GAAP P +PP G G P +
Sbjct: 62 ALDQLSALGLGGAGDTDEEGAAGDGAAAAGGADGGAAPEP-VPPDGPEAGAPPTL----- 115
Query: 110 ESYPAVPPIWSVESDDPN 127
PAV P S+ DPN
Sbjct: 116 --APAVAP-GSLPLLDPN 130
>gi|239751555 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 39.3 bits (90), Expect = 0.007
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 162 LPQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKE-EEPAEGKKSEDD 220
L QHP L P C + SSEDED+E E D++ ++ E EE EG+ +DD
Sbjct: 707 LAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDD 766
Query: 221 GIGKENLAIL 230
E +L
Sbjct: 767 EEEDEETEVL 776
>gi|239746067 PREDICTED: functional smad suppressing element 18
[Homo sapiens]
Length = 1252
Score = 39.3 bits (90), Expect = 0.007
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 162 LPQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKE-EEPAEGKKSEDD 220
L QHP L P C + SSEDED+E E D++ ++ E EE EG+ +DD
Sbjct: 707 LAQHPHHRGLLSPGGTSCCYPSEDSSEDEDDEEEEQEVDVEGHKPPEGEEEEEGRDPDDD 766
Query: 221 GIGKENLAIL 230
E +L
Sbjct: 767 EEEDEETEVL 776
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.3 bits (90), Expect = 0.007
Identities = 18/37 (48%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 3 QPQPQGQQQP-GPGQQLGGQGAAPGAGGGPGGGPGPG 38
+P P G +P GP G PG G GPG GPGPG
Sbjct: 151 EPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPG 187
Score = 35.0 bits (79), Expect = 0.13
Identities = 15/27 (55%), Positives = 16/27 (59%)
Query: 13 GPGQQLGGQGAAPGAGGGPGGGPGPGP 39
GP + G A AG GPG GPGPGP
Sbjct: 156 GPAKPAGPAALAARAGPGPGPGPGPGP 182
>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
Length = 2157
Score = 38.5 bits (88), Expect = 0.012
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 2 QQPQPQGQ-QQPGPGQQLGGQGAAP-GAGGGPGGGPGPG 38
Q+P + Q ++PGPG + G G++ G GGGPGG GPG
Sbjct: 1388 QRPGMERQNRRPGPGGKAGSSGSSSGGGGGGPGGRTGPG 1426
>gi|19923345 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 38.5 bits (88), Expect = 0.012
Identities = 18/36 (50%), Positives = 18/36 (50%)
Query: 4 PQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGP 39
P G PG G G G P G GPG GPGPGP
Sbjct: 802 PPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGP 837
>gi|23510462 RNA binding motif protein 12 [Homo sapiens]
Length = 932
Score = 38.5 bits (88), Expect = 0.012
Identities = 18/36 (50%), Positives = 18/36 (50%)
Query: 4 PQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGP 39
P G PG G G G P G GPG GPGPGP
Sbjct: 802 PPGFGSGPPGLGSAPGHLGGPPAFGPGPGPGPGPGP 837
>gi|110347449 POU domain, class 4, transcription factor 1 [Homo
sapiens]
Length = 419
Score = 38.5 bits (88), Expect = 0.012
Identities = 18/28 (64%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 13 GPGQQLGGQGA--APGAGGGPGGGPGPG 38
G G GG GA PG GGGPGGG GPG
Sbjct: 133 GAGAAAGGGGAHDGPGGGGGPGGGGGPG 160
Score = 36.6 bits (83), Expect = 0.044
Identities = 18/32 (56%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 8 GQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGP 39
G GPG GG G G GGGPGGG G GP
Sbjct: 141 GGAHDGPGGG-GGPGGGGGPGGGPGGGGGGGP 171
Score = 36.6 bits (83), Expect = 0.044
Identities = 29/81 (35%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 6 PQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASAC 65
P G PG G GG G G GGGPGGG G + S+ H H A
Sbjct: 153 PGGGGGPGGGPGGGGGGGPGGGGGGPGGGLLGGSA--HPHPHMHSLGHLSHPAAAAAMNM 210
Query: 66 LDELSCEFLLAGAGGAGAGAA 86
L L+A A GA AA
Sbjct: 211 PSGLPHPGLVAAAAHHGAAAA 231
Score = 33.1 bits (74), Expect = 0.49
Identities = 16/26 (61%), Positives = 16/26 (61%), Gaps = 3/26 (11%)
Query: 13 GPGQQLGGQGAAPGAGGGPGGGPGPG 38
GPG GG G G GGG GGGPG G
Sbjct: 152 GPG---GGGGPGGGPGGGGGGGPGGG 174
>gi|7706501 WW domain binding protein 11 [Homo sapiens]
Length = 641
Score = 38.5 bits (88), Expect = 0.012
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 163 PQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAEGKKSEDDG 221
P+ D +ML P A++ +DVSS ED+ PED + H + ++ + E DG
Sbjct: 227 PRRRDEDMLYSPELAQRGHDDDVSSTSEDDGYPEDMDQDKHDDSTDDSDTDKSDGESDG 285
>gi|12707580 paired-like homeobox 2b [Homo sapiens]
Length = 314
Score = 38.1 bits (87), Expect = 0.015
Identities = 35/102 (34%), Positives = 38/102 (37%), Gaps = 22/102 (21%)
Query: 4 PQPQGQQQPGPGQQLGGQGA-----APGAGG--GPGGGPGPGPCLRRELKLLESIFHRGH 56
P P P G GG G APGA G GPGG PG G
Sbjct: 198 PGPNPNPTPSCGANGGGGGGPSPAGAPGAAGPGGPGGEPGKGGAAAAAAAAA-------- 249
Query: 57 ERFRIASACLDELSCEFLLAGAGGAGAGAAPGPHLPPRGSVP 98
A+A + LA AGG G G APGP P S+P
Sbjct: 250 -----AAAAAAAAAAAGGLAAAGGPGQGWAPGP--GPITSIP 284
>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
sapiens]
Length = 859
Score = 37.7 bits (86), Expect = 0.020
Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 14 PGQQLGGQGAAPGAGGGPGGGPGPGPCLRRELKLLESIFHRGHERFRIASACLDELSCEF 73
P + GG G+ G GGGP P LR H +++S+ D LS
Sbjct: 567 PPHEPGGPGSPGGLGGGPSAWEACPPALRG--------LHHDLLLRKMSSSSPDLLSAAL 618
Query: 74 LLAGAGGAGAGAAPGPHLPPRGSVP 98
G G G PG P RG P
Sbjct: 619 GSRGRGATGGAGDPGSPPPARGDTP 643
>gi|194363768 homeobox D9 [Homo sapiens]
Length = 352
Score = 37.7 bits (86), Expect = 0.020
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 11 QPGPGQQLGGQGAAPGAGGGPGGGPGPGP 39
+P PG G G G GGGPG GP PGP
Sbjct: 121 EPLPGFPGGAGGGGGGGGGGPGRGPSPGP 149
>gi|24497618 ATPase family, AAA domain containing 2 [Homo sapiens]
Length = 1390
Score = 37.7 bits (86), Expect = 0.020
Identities = 36/149 (24%), Positives = 67/149 (44%), Gaps = 14/149 (9%)
Query: 102 VRIHCNITESYPAVPPIWSVESDDPNLA-AVLERLVDIKKGNTLLLQHLKRI-------I 153
VR C I Y V + N A AVL+++ D+KK ++ L+ +
Sbjct: 154 VRRSCRIRSRYSGVNQSMLFDKLITNTAEAVLQKMDDMKKMRRQRMRELEDLGVFNETEE 213
Query: 154 SDLCKLYNLPQHPDVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDHYEMKEEEPAE 213
S+L +Y + D++ D+ Q + S E ED+E +D ED D + +++ +
Sbjct: 214 SNL-NMYTRGKQKDIQRTDEETTDNQEGSVESSEEGEDQEHEDDGEDEDDEDDDDDDDDD 272
Query: 214 GKKSEDDGIGKENLAILEKIKKNQRQDYL 242
++D +E + ++NQ++ YL
Sbjct: 273 DDDDDEDDEDEE-----DGEEENQKRYYL 296
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 37.7 bits (86), Expect = 0.020
Identities = 18/35 (51%), Positives = 18/35 (51%)
Query: 4 PQPQGQQQPGPGQQLGGQGAAPGAGGGPGGGPGPG 38
P P Q QP P G GA PGAGG G G G G
Sbjct: 15 PPPPPQPQPQPPPPPPGPGAGPGAGGAGGAGAGAG 49
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.136 0.404
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,806,441
Number of Sequences: 37866
Number of extensions: 1245969
Number of successful extensions: 16143
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 394
Number of HSP's that attempted gapping in prelim test: 10671
Number of HSP's gapped (non-prelim): 4149
length of query: 422
length of database: 18,247,518
effective HSP length: 105
effective length of query: 317
effective length of database: 14,271,588
effective search space: 4524093396
effective search space used: 4524093396
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.