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Search of human proteins with 31415880
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31415880 protein phosphatase 1, regulatory (inhibitor)
subunit 1B isoform 2 [Homo sapiens]
(168 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|21735492 protein phosphatase 1, regulatory (inhibitor) subuni... 345 8e-96
gi|31415880 protein phosphatase 1, regulatory (inhibitor) subuni... 345 8e-96
gi|17975763 myelin transcription factor 1 [Homo sapiens] 51 4e-07
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 49 2e-06
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 49 2e-06
gi|100816397 MYST histone acetyltransferase (monocytic leukemia)... 49 3e-06
gi|118600967 shroom family member 4 [Homo sapiens] 48 5e-06
gi|4504487 histidine rich calcium binding protein precursor [Hom... 47 6e-06
gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [H... 47 8e-06
gi|4506411 Ran GTPase activating protein 1 [Homo sapiens] 47 8e-06
gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo sapi... 46 2e-05
gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isof... 46 2e-05
gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isof... 46 2e-05
gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isof... 46 2e-05
gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isof... 46 2e-05
gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isof... 46 2e-05
gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isof... 46 2e-05
gi|21735415 centromere protein B [Homo sapiens] 45 2e-05
gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens] 45 2e-05
gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens] 45 2e-05
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 45 3e-05
gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens] 45 4e-05
gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens] 45 4e-05
gi|115529449 upstream binding transcription factor, RNA polymera... 45 4e-05
gi|115529451 upstream binding transcription factor, RNA polymera... 45 4e-05
gi|7657671 upstream binding transcription factor, RNA polymerase... 45 4e-05
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is... 44 5e-05
gi|156142197 euchromatic histone-lysine N-methyltransferase 2 is... 44 5e-05
gi|21361639 DIPB protein [Homo sapiens] 44 5e-05
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 44 5e-05
>gi|21735492 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 1 [Homo sapiens]
Length = 204
Score = 345 bits (886), Expect = 8e-96
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MLFRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNL 60
MLFRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNL
Sbjct: 37 MLFRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNL 96
Query: 61 NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCG 120
NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCG
Sbjct: 97 NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCG 156
Query: 121 QGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT 168
QGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT
Sbjct: 157 QGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT 204
>gi|31415880 protein phosphatase 1, regulatory (inhibitor) subunit
1B isoform 2 [Homo sapiens]
Length = 168
Score = 345 bits (886), Expect = 8e-96
Identities = 168/168 (100%), Positives = 168/168 (100%)
Query: 1 MLFRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNL 60
MLFRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNL
Sbjct: 1 MLFRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNL 60
Query: 61 NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCG 120
NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCG
Sbjct: 61 NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCG 120
Query: 121 QGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT 168
QGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT
Sbjct: 121 QGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT 168
>gi|17975763 myelin transcription factor 1 [Homo sapiens]
Length = 1121
Score = 51.2 bits (121), Expect = 4e-07
Identities = 31/83 (37%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
SH + E + EEEDE E E EE+EEEEE++EEEEEEE+ +A + ++
Sbjct: 256 SHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQE 315
Query: 112 ----SAGQKTTCGQGLEGPWERP 130
++ QK +G E P +P
Sbjct: 316 DTSHTSAQKAPELRGPESPSPKP 338
Score = 47.0 bits (110), Expect = 8e-06
Identities = 26/65 (40%), Positives = 36/65 (55%)
Query: 40 PPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEE 99
P SL+ S + I + E EEE+E E + EE+EEEEE++EEEEEEE
Sbjct: 237 PQSLEDAASEESSKQKGILSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEE 296
Query: 100 DSQAE 104
+ + E
Sbjct: 297 EEEEE 301
Score = 47.0 bits (110), Expect = 8e-06
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 8/86 (9%)
Query: 57 ISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAE-----VLKVIRQ 111
+S+ E++ EEE+E E E EE+EEEEE++EEEEEEE+ + E VI Q
Sbjct: 255 LSHEEEDEEEEEEEEEEEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEAAPDVIFQ 314
Query: 112 SAGQKTTCGQG--LEGPWERPPPLDE 135
T+ + L GP E P P E
Sbjct: 315 EDTSHTSAQKAPELRGP-ESPSPKPE 339
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 49.3 bits (116), Expect = 2e-06
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 12/75 (16%)
Query: 43 LKAVQRIAESHL------------QSISNLNENQASEEEDELGELRELGYPREEDEEEEE 90
L V+R+ SH+ Q +N E + EEEDE E + EE+EEEEE
Sbjct: 702 LNRVRRVGFSHMLLTTPQVPLAPVQPQANGKEEEEEEEEDEEEEEEDEEEEEEEEEEEEE 761
Query: 91 DDEEEEEEEDSQAEV 105
++EEEEEEE++ A V
Sbjct: 762 EEEEEEEEEEAAAAV 776
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 48.9 bits (115), Expect = 2e-06
Identities = 43/131 (32%), Positives = 60/131 (45%), Gaps = 13/131 (9%)
Query: 40 PPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEE--EE 97
PP+L E L I+ + ++ EEE+E E E EED EEEE+DEEE EE
Sbjct: 871 PPAL-------EEDLTVININSSDEEEEEEEEEEEEEEEEEEEEEDFEEEEEDEEEYFEE 923
Query: 98 EEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERPPPLDESE--RDGGSEDQVEDPALSEPG 155
EE+ + E + + G+ + E E L+E E G + +VE+ A P
Sbjct: 924 EEEEEEEFEEEFEEEEGELEE--EEEEEDEEEEEELEEVEDLEFGTAGGEVEEGAPPPPT 981
Query: 156 EEPQRPSPSEP 166
P P P P
Sbjct: 982 LPPALPPPESP 992
Score = 43.1 bits (100), Expect = 1e-04
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 9/116 (7%)
Query: 51 ESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIR 110
E + + E E E+E GEL E EE+E+EEE++E EE E+ +
Sbjct: 918 EEYFEEEEEEEEEFEEEFEEEEGELEE----EEEEEDEEEEEELEEVEDLEFGTAGGEVE 973
Query: 111 QSAGQKTTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEP 166
+ A T L P P E E + G +VE EPG E +R + + P
Sbjct: 974 EGAPPPPTLPPALPPPESPPKVQPEPEPEPGLLLEVE-----EPGTEEERGADTAP 1024
Score = 41.2 bits (95), Expect = 4e-04
Identities = 43/149 (28%), Positives = 56/149 (37%), Gaps = 42/149 (28%)
Query: 61 NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKV--------IRQS 112
+E + EEE+E E E + EE E EEE++EE+EEEE+ EV + + +
Sbjct: 916 DEEEYFEEEEEEEEEFEEEFEEEEGELEEEEEEEDEEEEEELEEVEDLEFGTAGGEVEEG 975
Query: 113 AGQKTTCGQGLEGPWERPP------------------PLDESER---------------D 139
A T L P E PP P E ER
Sbjct: 976 APPPPTLPPALPPP-ESPPKVQPEPEPEPGLLLEVEEPGTEEERGADTAPTLAPEALPSQ 1034
Query: 140 GGSEDQVEDPALSEPGEEPQRPSPSEPGT 168
G E + E PA P +E PS P T
Sbjct: 1035 GEVEREGESPAAGPPPQELVEEEPSAPPT 1063
>gi|100816397 MYST histone acetyltransferase (monocytic leukemia) 4
[Homo sapiens]
Length = 2073
Score = 48.5 bits (114), Expect = 3e-06
Identities = 37/103 (35%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 4 RLSEHSS---PEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNL 60
RL E +S EE+ RA+ K + N ++P S L +S
Sbjct: 1010 RLMEQASCWEKEEQEILSTRANSRQSPAKVQSKNKYLHSPESRPVTGE--RGQLLELSKE 1067
Query: 61 NENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQA 103
+ + EEEDE E E EEDEEEEE++EEEEEEE+ Q+
Sbjct: 1068 SSEEEEEEEDEEEEEEE--EEEEEDEEEEEEEEEEEEEENIQS 1108
Score = 46.6 bits (109), Expect = 1e-05
Identities = 44/171 (25%), Positives = 73/171 (42%), Gaps = 25/171 (14%)
Query: 3 FRLSEHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNE 62
F+L+ ++ PE P ++ + E + K + +P ++ + + E+ +++ E
Sbjct: 1269 FKLNLYTPPETPMEPDEQVTVE----EQKETSEGKTSPSPIRIEEEVKETG-EALLPQEE 1323
Query: 63 NQASEE------EDELGELRE--LGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAG 114
N+ E GE E L P EE+EEEEE++EEEEEEE + E G
Sbjct: 1324 NRREETCAPVSPNTSPGEKPEDDLIKPEEEEEEEEEEEEEEEEEEGEEEE-------GGG 1376
Query: 115 QKTTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSE 165
G + + P + + D D E E EE + PS +E
Sbjct: 1377 NVEKDPDGAKSQEKEEPEISTEKEDSARLDDHE-----EEEEEDEEPSHNE 1422
Score = 43.9 bits (102), Expect = 7e-05
Identities = 25/64 (39%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 42 SLKAVQRIAESHLQSISN-LNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEED 100
S +A R + + +QS + L+ ++ E G+L EL E+EEEEED+EEEEEEE+
Sbjct: 1027 STRANSRQSPAKVQSKNKYLHSPESRPVTGERGQLLELSKESSEEEEEEEDEEEEEEEEE 1086
Query: 101 SQAE 104
+ +
Sbjct: 1087 EEED 1090
Score = 32.0 bits (71), Expect = 0.26
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAE 104
+EE E+ +E ++ EEEEE+DEE ED A+
Sbjct: 1390 KEEPEISTEKEDSARLDDHEEEEEEDEEPSHNEDHDAD 1427
Score = 28.9 bits (63), Expect = 2.2
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 7 EHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQAS 66
E EEE + EG K P+ S + + + + + L++++
Sbjct: 1356 EEEEEEEEEEEEEGEEEEGGGNVEKDPDGAK----SQEKEEPEISTEKEDSARLDDHEEE 1411
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEEEEEE--EDSQAEVLK 107
EEEDE E +ED+ E E E+EE +S EVL+
Sbjct: 1412 EEEDEEPSHNEDHDADDEDDSHMESAEVEKEELPRESFKEVLE 1454
Score = 28.1 bits (61), Expect = 3.7
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEE-EEDDEEEEEEEDSQAEVLKVIRQ 111
E + S E+++ L + EEDEE +D + ++E+DS E +V ++
Sbjct: 1392 EPEISTEKEDSARLDDHEEEEEEDEEPSHNEDHDADDEDDSHMESAEVEKE 1442
>gi|118600967 shroom family member 4 [Homo sapiens]
Length = 1493
Score = 47.8 bits (112), Expect = 5e-06
Identities = 33/114 (28%), Positives = 48/114 (42%), Gaps = 13/114 (11%)
Query: 40 PPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEE 99
PP+ + + + Q + Q EEE EE+EEEEE++EEEEEE
Sbjct: 1106 PPNWEKYRLFRAAQQQKQQQQQQKQQEEEE-------------EEEEEEEEEEEEEEEEA 1152
Query: 100 DSQAEVLKVIRQSAGQKTTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSE 153
+ + E L S+ +C E E+P PL +G + PA E
Sbjct: 1153 EEEEEELPPQYFSSETSGSCALNPEEVLEQPQPLSFGHLEGSRQGSQSVPAEQE 1206
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 47.4 bits (111), Expect = 6e-06
Identities = 38/112 (33%), Positives = 55/112 (49%), Gaps = 11/112 (9%)
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQ-----AEV-LKVIRQSAGQKTTCG 120
++EDE E G ++EEEEED EEEEEEED + AEV + + ++
Sbjct: 515 DQEDEEDEEEGHGLSLNQEEEEEEDKEEEEEEEDEERREERAEVGAPLSPDHSEEEEEEE 574
Query: 121 QGLEGPWER----PPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT 168
+GLE R P PLD E GG+ + E + P ++ Q +PG+
Sbjct: 575 EGLEEDEPRFTIIPNPLDRREEAGGASSEEESGEDTGP-QDAQEYGNYQPGS 625
Score = 42.0 bits (97), Expect = 2e-04
Identities = 40/146 (27%), Positives = 56/146 (38%), Gaps = 29/146 (19%)
Query: 8 HSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASE 67
H S + E S R HHL S R SH + +E +SE
Sbjct: 137 HGSEDTEDSAEHR-----HHLPSHR-------------------SHSHQDEDEDEVVSSE 172
Query: 68 EEDELGELRELGYPREEDEEEEEDDEEEEEEEDS-----QAEVLKVIRQSAGQKTTCGQG 122
+ G+ E+DE EEE++EEEEEEE S QA + + + G
Sbjct: 173 HHHHILRHGHRGHDGEDDEGEEEEEEEEEEEEASTEYGHQAHRHRGHGSEEDEDVSDGHH 232
Query: 123 LEGPWERPPPLDESERDGGSEDQVED 148
GP R +E + D +D +D
Sbjct: 233 HHGPSHRHQGHEEDDDDDDDDDDDDD 258
Score = 30.8 bits (68), Expect = 0.57
Identities = 21/107 (19%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 61 NENQASEEEDELGELRELGYP------REEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAG 114
+ SEE++++ + P EED+++++DD+++++++D E + G
Sbjct: 216 HRGHGSEEDEDVSDGHHHHGPSHRHQGHEEDDDDDDDDDDDDDDDDVSIEYRHQAHRHQG 275
Query: 115 QKTTCGQGL-EGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQR 160
+ + +G R P R +D +D +E G + R
Sbjct: 276 HGIEEDEDVSDGHHHRDP--SHRHRSHEEDDNDDDDVSTEYGHQAHR 320
>gi|114205399 cyclic nucleotide gated channel beta 1 isoform a [Homo
sapiens]
Length = 1251
Score = 47.0 bits (110), Expect = 8e-06
Identities = 33/107 (30%), Positives = 53/107 (49%), Gaps = 12/107 (11%)
Query: 65 ASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQS-------AGQKT 117
A EEE++ E R E+E+E+E++EEEEEEE+ + EV +V+ S GQ
Sbjct: 332 AYEEENKAVEKMPRELSRIEEEKEDEEEEEEEEEEEEEEEVTEVLLDSCVVSQVGVGQSE 391
Query: 118 TCGQGLEGP-----WERPPPLDESERDGGSEDQVEDPALSEPGEEPQ 159
G + WE + E + ++++ E+ A E +EPQ
Sbjct: 392 EDGTRPQSTSDQKLWEEVGEEAKKEAEEKAKEEAEEVAEEEAEKEPQ 438
Score = 30.4 bits (67), Expect = 0.75
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 8/66 (12%)
Query: 39 TPPSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEE 98
T P + Q++ E + E +A EE +E+ E EE E+E +D E +EE
Sbjct: 395 TRPQSTSDQKLWEEVGEEAKKEAEEKAKEEAEEVAE--------EEAEKEPQDWAETKEE 446
Query: 99 EDSQAE 104
+++AE
Sbjct: 447 PEAEAE 452
>gi|4506411 Ran GTPase activating protein 1 [Homo sapiens]
Length = 587
Score = 47.0 bits (110), Expect = 8e-06
Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 29/112 (25%)
Query: 57 ISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQK 116
+++L++++ EEE+E E E EE++EEEE++EEEEEEE+ Q
Sbjct: 354 LASLSDDEDEEEEEEGEEEEEEAEEEEEEDEEEEEEEEEEEEEEPQQR------------ 401
Query: 117 TTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPGT 168
GQG E+ ++ DP EP P P++ T
Sbjct: 402 ---GQG--------------EKSATPSRKILDPNTGEPAPVLSSPPPADVST 436
>gi|211904182 DDB1 and CUL4 associated factor 8-like 2 [Homo
sapiens]
Length = 631
Score = 45.8 bits (107), Expect = 2e-05
Identities = 23/41 (56%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQ 102
E EEEDE E++E G EE+EEEEE++EEEEEEE+ +
Sbjct: 109 EETEREEEDE--EIQEEGGEEEEEEEEEEEEEEEEEEEEEE 147
Score = 44.7 bits (104), Expect = 4e-05
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 2/41 (4%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQ 102
E + EE++E+ E E G EE+EEEEE++EEEEEEE+ Q
Sbjct: 110 ETEREEEDEEIQE--EGGEEEEEEEEEEEEEEEEEEEEEEQ 148
Score = 29.3 bits (64), Expect = 1.7
Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 22/96 (22%)
Query: 56 SISNLNENQASEEED-ELGELRELG-----------YPR--EEDEEEEEDD--------E 93
S N + +Q S ED EL L + YP EE+ E EE+D E
Sbjct: 67 STENRSSDQESASEDIELESLEDFEHFLMSGESLFHYPLVGEEETEREEEDEEIQEEGGE 126
Query: 94 EEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGPWER 129
EEEEEE+ + E + + Q QG G E+
Sbjct: 127 EEEEEEEEEEEEEEEEEEEEEQPRAGPQGSGGNHEQ 162
>gi|16332372 cell division cycle 2-like 1 (PITSLRE proteins) isoform
9 [Homo sapiens]
Length = 771
Score = 45.8 bits (107), Expect = 2e-05
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 266 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 323
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED---------PALSEPGEE 157
SA + + + E P +RD G ++ E+ AL+E
Sbjct: 324 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYV 383
Query: 158 PQRPSPS 164
P P+ S
Sbjct: 384 PDSPALS 390
Score = 34.3 bits (77), Expect = 0.052
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 14 EASPHQRASGEGHHLKSKRPNPCAYTPP-----------SLKAVQRIAESHLQSISNLNE 62
E S H R E + K K + + +PP K V+ +S+L +
Sbjct: 199 EVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQD 257
Query: 63 NQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQG 122
SE + E +EEEEE++EEEEE S+ + + ++ T
Sbjct: 258 ISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNS 317
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
E + + E E E + E+ L P R S
Sbjct: 318 EEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 357
>gi|16332370 cell division cycle 2-like 1 (PITSLRE proteins) isoform
8 [Homo sapiens]
Length = 780
Score = 45.8 bits (107), Expect = 2e-05
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 275 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 332
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED---------PALSEPGEE 157
SA + + + E P +RD G ++ E+ AL+E
Sbjct: 333 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYV 392
Query: 158 PQRPSPS 164
P P+ S
Sbjct: 393 PDSPALS 399
Score = 34.3 bits (77), Expect = 0.052
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 14 EASPHQRASGEGHHLKSKRPNPCAYTPP-----------SLKAVQRIAESHLQSISNLNE 62
E S H R E + K K + + +PP K V+ +S+L +
Sbjct: 208 EVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQD 266
Query: 63 NQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQG 122
SE + E +EEEEE++EEEEE S+ + + ++ T
Sbjct: 267 ISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNS 326
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
E + + E E E + E+ L P R S
Sbjct: 327 EEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 366
>gi|16332364 cell division cycle 2-like 1 (PITSLRE proteins) isoform
5 [Homo sapiens]
Length = 748
Score = 45.8 bits (107), Expect = 2e-05
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 243 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 300
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED---------PALSEPGEE 157
SA + + + E P +RD G ++ E+ AL+E
Sbjct: 301 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYV 360
Query: 158 PQRPSPS 164
P P+ S
Sbjct: 361 PDSPALS 367
Score = 34.3 bits (77), Expect = 0.052
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 14 EASPHQRASGEGHHLKSKRPNPCAYTPP-----------SLKAVQRIAESHLQSISNLNE 62
E S H R E + K K + + +PP K V+ +S+L +
Sbjct: 176 EVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQD 234
Query: 63 NQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQG 122
SE + E +EEEEE++EEEEE S+ + + ++ T
Sbjct: 235 ISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNS 294
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
E + + E E E + E+ L P R S
Sbjct: 295 EEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 334
>gi|16332362 cell division cycle 2-like 1 (PITSLRE proteins) isoform
4 [Homo sapiens]
Length = 737
Score = 45.8 bits (107), Expect = 2e-05
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 232 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 289
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED---------PALSEPGEE 157
SA + + + E P +RD G ++ E+ AL+E
Sbjct: 290 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYV 349
Query: 158 PQRPSPS 164
P P+ S
Sbjct: 350 PDSPALS 356
Score = 34.3 bits (77), Expect = 0.052
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 14 EASPHQRASGEGHHLKSKRPNPCAYTPP-----------SLKAVQRIAESHLQSISNLNE 62
E S H R E + K K + + +PP K V+ +S+L +
Sbjct: 165 EVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQD 223
Query: 63 NQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQG 122
SE + E +EEEEE++EEEEE S+ + + ++ T
Sbjct: 224 ISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNS 283
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
E + + E E E + E+ L P R S
Sbjct: 284 EEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 323
>gi|16332360 cell division cycle 2-like 1 (PITSLRE proteins) isoform
3 [Homo sapiens]
Length = 526
Score = 45.8 bits (107), Expect = 2e-05
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 21 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 78
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED---------PALSEPGEE 157
SA + + + E P +RD G ++ E+ AL+E
Sbjct: 79 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYV 138
Query: 158 PQRPSPS 164
P P+ S
Sbjct: 139 PDSPALS 145
Score = 33.9 bits (76), Expect = 0.067
Identities = 26/106 (24%), Positives = 42/106 (39%)
Query: 57 ISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQK 116
+S+L + SE + E +EEEEE++EEEEE S+ + + ++
Sbjct: 7 LSDLQDISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEE 66
Query: 117 TTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
T E + + E E E + E+ L P R S
Sbjct: 67 ETGSNSEEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 112
Score = 33.9 bits (76), Expect = 0.067
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDD---------EEEEEEEDSQ 102
S LQ IS+ +E + S E E EE+EEEEE++ EEEEEEE+ +
Sbjct: 8 SDLQDISD-SERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEE 66
>gi|16332358 cell division cycle 2-like 1 (PITSLRE proteins) isoform
2 [Homo sapiens]
Length = 782
Score = 45.8 bits (107), Expect = 2e-05
Identities = 40/127 (31%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 277 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 334
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED---------PALSEPGEE 157
SA + + + E P +RD G ++ E+ AL+E
Sbjct: 335 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEEEVGEGTPQSSALTEGDYV 394
Query: 158 PQRPSPS 164
P P+ S
Sbjct: 395 PDSPALS 401
Score = 34.3 bits (77), Expect = 0.052
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 14 EASPHQRASGEGHHLKSKRPNPCAYTPP-----------SLKAVQRIAESHLQSISNLNE 62
E S H R E + K K + + +PP K V+ +S+L +
Sbjct: 210 EVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQD 268
Query: 63 NQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQG 122
SE + E +EEEEE++EEEEE S+ + + ++ T
Sbjct: 269 ISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNS 328
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
E + + E E E + E+ L P R S
Sbjct: 329 EEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 368
>gi|21735415 centromere protein B [Homo sapiens]
Length = 599
Score = 45.4 bits (106), Expect = 2e-05
Identities = 37/115 (32%), Positives = 53/115 (46%), Gaps = 10/115 (8%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEE-EDSQAEVLKVIRQSAGQKTTCG 120
E + EEE+E GE ELG E +EE + D +EEEEE E+S +E L+ + G G
Sbjct: 426 EEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDEEEEEDEESSSEGLEAEDWAQGVVEAGG 485
Query: 121 Q-GLEGPWERP--PPL------DESERDGGSEDQVEDPALSEPGEEPQRPSPSEP 166
G G E P L ++S+ D ED E+ E ++ + P
Sbjct: 486 SFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEEDDEEEDDEDEDDDDDEEDGDEVP 540
Score = 37.0 bits (84), Expect = 0.008
Identities = 33/120 (27%), Positives = 56/120 (46%), Gaps = 13/120 (10%)
Query: 58 SNLNENQASEEEDELGELRELGYPREEDEEEEEDDEE--------EEEEEDSQAEVLKVI 109
++L EEE+E E E G EE+EE EE++EE EEEE + + +V
Sbjct: 399 TSLKSEGEEEEEEEEEEEEEEGEGEEEEEEGEEEEEEGGEGEELGEEEEVEEEGDVDSDE 458
Query: 110 RQSAGQKTTCGQGLEGPWERPPPLDESERDG--GSEDQVEDPALS--EPGEEPQRPSPSE 165
+ ++++ +GLE ++ G G++++ + P L E GE+ S E
Sbjct: 459 EEEEDEESS-SEGLEAEDWAQGVVEAGGSFGAYGAQEEAQCPTLHFLEGGEDSDSDSEEE 517
Score = 30.0 bits (66), Expect = 0.97
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 83 EEDEEEEEDDEEEEEEEDSQAEVLKV 108
EED+EEE+D++E++++++ + + V
Sbjct: 516 EEDDEEEDDEDEDDDDDEEDGDEVPV 541
Score = 29.3 bits (64), Expect = 1.7
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 84 EDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQ 115
E+E++EE+D+E+E+++D + + +V S G+
Sbjct: 515 EEEDDEEEDDEDEDDDDDEEDGDEVPVPSFGE 546
>gi|148763345 cell division cycle 2-like 2 isoform 4 [Homo sapiens]
Length = 770
Score = 45.4 bits (106), Expect = 2e-05
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 265 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 322
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED 148
SA + + + E P +RD G ++ E+
Sbjct: 323 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEE 364
Score = 34.3 bits (77), Expect = 0.052
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 14 EASPHQRASGEGHHLKSKRPNPCAYTPP-----------SLKAVQRIAESHLQSISNLNE 62
E S H R E + K K + + +PP K V+ +S+L +
Sbjct: 198 EVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQD 256
Query: 63 NQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQG 122
SE + E +EEEEE++EEEEE S+ + + ++ T
Sbjct: 257 ISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNS 316
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
E + + E E E + E+ L P R S
Sbjct: 317 EEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 356
Score = 30.0 bits (66), Expect = 0.97
Identities = 21/90 (23%), Positives = 33/90 (36%)
Query: 9 SSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEE 68
S EEE + EG + + E+ QS ++E + SE+
Sbjct: 276 SGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED 335
Query: 69 EDELGELRELGYPREEDEEEEEDDEEEEEE 98
E+ E L P + + + EE EEE
Sbjct: 336 EERENENHLLVVPESRFDRDSGESEEAEEE 365
>gi|148763347 cell division cycle 2-like 2 isoform 1 [Homo sapiens]
Length = 780
Score = 45.4 bits (106), Expect = 2e-05
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 52 SHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQ 111
S +S S + + + EEE+E E E G EE EEEEE++EEEEEE S +E + Q
Sbjct: 275 SSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSE--EASEQ 332
Query: 112 SAGQKTTCGQGLEGPWERP-----PPLDESERDGGSEDQVED 148
SA + + + E P +RD G ++ E+
Sbjct: 333 SAEEVSEEEMSEDEERENENHLLVVPESRFDRDSGESEEAEE 374
Score = 34.3 bits (77), Expect = 0.052
Identities = 37/160 (23%), Positives = 58/160 (36%), Gaps = 12/160 (7%)
Query: 14 EASPHQRASGEGHHLKSKRPNPCAYTPP-----------SLKAVQRIAESHLQSISNLNE 62
E S H R E + K K + + +PP K V+ +S+L +
Sbjct: 208 EVSAHHRTMREDYSDKVKASH-WSRSPPRPPRERFELGDGRKPVKEEKMEERDLLSDLQD 266
Query: 63 NQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQG 122
SE + E +EEEEE++EEEEE S+ + + ++ T
Sbjct: 267 ISDSERKTSSAESSSAESGSGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNS 326
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
E + + E E E + E+ L P R S
Sbjct: 327 EEASEQSAEEVSEEEMSEDEERENENHLLVVPESRFDRDS 366
Score = 30.0 bits (66), Expect = 0.97
Identities = 21/90 (23%), Positives = 33/90 (36%)
Query: 9 SSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEE 68
S EEE + EG + + E+ QS ++E + SE+
Sbjct: 286 SGSEEEEEEEEEEEEEGSTSEESEEEEEEEEEEEEETGSNSEEASEQSAEEVSEEEMSED 345
Query: 69 EDELGELRELGYPREEDEEEEEDDEEEEEE 98
E+ E L P + + + EE EEE
Sbjct: 346 EERENENHLLVVPESRFDRDSGESEEAEEE 375
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 45.1 bits (105), Expect = 3e-05
Identities = 39/156 (25%), Positives = 60/156 (38%), Gaps = 6/156 (3%)
Query: 7 EHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQAS 66
E S EE S + H L SK + E + E +
Sbjct: 336 EESEDEEYYSEDEDQEARRHRLHSKDQRKRMRAFQQEMKEKEEEEMKKEEEMKKKEEKEE 395
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGP 126
EEE+E+ + E R ++EEE E +EE+E+ED + +Q G + T G+ E
Sbjct: 396 EEEEEMKQKEEEEEIRNKNEEEGESKDEEDEDEDGGQKPEGEPQQDPGTEETYGEVEE-- 453
Query: 127 WERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPS 162
PLDE++ D E +P + P+
Sbjct: 454 ----EPLDEAQDDDLDELMEMEPTFVHASSQTSGPT 485
>gi|20336205 transcriptional regulator ATRX isoform 2 [Homo sapiens]
Length = 2454
Score = 44.7 bits (104), Expect = 4e-05
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 7 EHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQAS 66
E S E+E P R++ + +++R S K ++ +Q S+ S
Sbjct: 1354 EVSESEDEQRPRTRSAKKAELEENQR---------SYKQKKKRRRIKVQEDSSSENKSNS 1404
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQA-----EVLKVIRQSAGQKTTCGQ 121
EEE+E E EE+EEEEE++EEE+E +DS++ + ++ I + +T
Sbjct: 1405 EEEEEEKE-------EEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQN 1457
Query: 122 GLEGPWERPPPLDESERD 139
L+ ER + E ER+
Sbjct: 1458 ALKEEEERRKRIAERERE 1475
Score = 35.4 bits (80), Expect = 0.023
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 41 PSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEED 100
P + +++ +++ + +E+ +S++E E G+ R G EE+ +EE + E D
Sbjct: 1229 PENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRT-GKQNEENPGDEEAKNQVNSESD 1287
Query: 101 SQAEVLKVIR---QSAGQKTTCGQGLEGPWERPPPLDESERDGG-----SEDQVEDPALS 152
S +E K R + K T G G ++ P + E G S + ED
Sbjct: 1288 SDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQ 1347
Query: 153 EPG--------EEPQRP 161
E G E+ QRP
Sbjct: 1348 ESGVSEEVSESEDEQRP 1364
>gi|20336209 transcriptional regulator ATRX isoform 1 [Homo sapiens]
Length = 2492
Score = 44.7 bits (104), Expect = 4e-05
Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 21/138 (15%)
Query: 7 EHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQAS 66
E S E+E P R++ + +++R S K ++ +Q S+ S
Sbjct: 1392 EVSESEDEQRPRTRSAKKAELEENQR---------SYKQKKKRRRIKVQEDSSSENKSNS 1442
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQA-----EVLKVIRQSAGQKTTCGQ 121
EEE+E E EE+EEEEE++EEE+E +DS++ + ++ I + +T
Sbjct: 1443 EEEEEEKE-------EEEEEEEEEEEEEEDENDDSKSPGKGRKKIRKILKDDKLRTETQN 1495
Query: 122 GLEGPWERPPPLDESERD 139
L+ ER + E ER+
Sbjct: 1496 ALKEEEERRKRIAERERE 1513
Score = 35.4 bits (80), Expect = 0.023
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 41 PSLKAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEED 100
P + +++ +++ + +E+ +S++E E G+ R G EE+ +EE + E D
Sbjct: 1267 PENRIAKKMLLEEIKANLSSDEDGSSDDEPEEGKKRT-GKQNEENPGDEEAKNQVNSESD 1325
Query: 101 SQAEVLKVIR---QSAGQKTTCGQGLEGPWERPPPLDESERDGG-----SEDQVEDPALS 152
S +E K R + K T G G ++ P + E G S + ED
Sbjct: 1326 SDSEESKKPRYRHRLLRHKLTVSDGESGEEKKTKPKEHKEVKGRNRRKVSSEDSEDSDFQ 1385
Query: 153 EPG--------EEPQRP 161
E G E+ QRP
Sbjct: 1386 ESGVSEEVSESEDEQRP 1402
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 22/123 (17%)
Query: 16 SPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEEEDELGE- 74
SP RA+ + ++ +KR + P+ K+ + +S +S + E++ E+EDE E
Sbjct: 601 SPQDRAAYK-EYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659
Query: 75 --------------------LRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAG 114
E G EED+E+E+DDE+++E+ED+++E S+G
Sbjct: 660 DENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSG 719
Query: 115 QKT 117
+
Sbjct: 720 DSS 722
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 22/123 (17%)
Query: 16 SPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEEEDELGE- 74
SP RA+ + ++ +KR + P+ K+ + +S +S + E++ E+EDE E
Sbjct: 601 SPQDRAAYK-EYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 659
Query: 75 --------------------LRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAG 114
E G EED+E+E+DDE+++E+ED+++E S+G
Sbjct: 660 DENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSG 719
Query: 115 QKT 117
+
Sbjct: 720 DSS 722
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 44.7 bits (104), Expect = 4e-05
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 22/123 (17%)
Query: 16 SPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQASEEEDELGE- 74
SP RA+ + ++ +KR + P+ K+ + +S +S + E++ E+EDE E
Sbjct: 638 SPQDRAAYK-EYISNKRKSMTKLRGPNPKSSRTTLQSKSESEEDDEEDEDDEDEDEEEED 696
Query: 75 --------------------LRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAG 114
E G EED+E+E+DDE+++E+ED+++E S+G
Sbjct: 697 DENGDSSEDGGDSSESSSEDESEDGDENEEDDEDEDDDEDDDEDEDNESEGSSSSSSSSG 756
Query: 115 QKT 117
+
Sbjct: 757 DSS 759
>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
isoform b [Homo sapiens]
Length = 1176
Score = 44.3 bits (103), Expect = 5e-05
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 59 NLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTT 118
+++E S+ + E+ L E EE+EEEEE++EEEEEEE+ + E + QS ++
Sbjct: 278 SVDERVDSDSKSEVEALTEQLSEEEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSS 337
Query: 119 CGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEP 154
+ + W + P + R + E P EP
Sbjct: 338 GRRKAKKKWRKDSPWVKPSR---KRRKREPPRAKEP 370
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 47 QRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVL 106
+R+ + L E + EEE+E E EE+EEEEE++EEEEE+E+S +
Sbjct: 281 ERVDSDSKSEVEALTEQLSEEEEEEEEE--------EEEEEEEEEEEEEEEDEESGNQSD 332
Query: 107 KVIRQSAGQKTTCGQGLEGPWERP 130
+ S +K + PW +P
Sbjct: 333 R-SGSSGRRKAKKKWRKDSPWVKP 355
>gi|156142197 euchromatic histone-lysine N-methyltransferase 2
isoform a [Homo sapiens]
Length = 1210
Score = 44.3 bits (103), Expect = 5e-05
Identities = 29/96 (30%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 59 NLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTT 118
+++E S+ + E+ L E EE+EEEEE++EEEEEEE+ + E + QS ++
Sbjct: 278 SVDERVDSDSKSEVEALTEQLSEEEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSS 337
Query: 119 CGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEP 154
+ + W + P + R + E P EP
Sbjct: 338 GRRKAKKKWRKDSPWVKPSR---KRRKREPPRAKEP 370
Score = 42.0 bits (97), Expect = 2e-04
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 47 QRIAESHLQSISNLNENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVL 106
+R+ + L E + EEE+E E EE+EEEEE++EEEEE+E+S +
Sbjct: 281 ERVDSDSKSEVEALTEQLSEEEEEEEEE--------EEEEEEEEEEEEEEEDEESGNQSD 332
Query: 107 KVIRQSAGQKTTCGQGLEGPWERP 130
+ S +K + PW +P
Sbjct: 333 R-SGSSGRRKAKKKWRKDSPWVKP 355
>gi|21361639 DIPB protein [Homo sapiens]
Length = 344
Score = 44.3 bits (103), Expect = 5e-05
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 8/120 (6%)
Query: 26 HHLKSKRPNPCAYTPPS------LKAVQRIAESHLQSISNLNENQASEEEDELGELRELG 79
HHL A+TPP+ + + E + S E SEEE E E E
Sbjct: 55 HHLAEYVHGSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETE 114
Query: 80 YPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERPPPLD-ESER 138
E++ +EE +++ EEE ED Q + Q G+ G+ E E P ++ E+ER
Sbjct: 115 EESEDESDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGE-TEAESEFDPEIEMEAER 173
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 44.3 bits (103), Expect = 5e-05
Identities = 41/154 (26%), Positives = 63/154 (40%), Gaps = 9/154 (5%)
Query: 12 EEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRI--------AESHLQSISNLNEN 63
EEE + GEG ++ +R +A + E + E
Sbjct: 748 EEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGEE 807
Query: 64 QASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKT-TCGQG 122
+ E E GE+ E REE+EEE E +EEE E E+ + E + + G++ G+G
Sbjct: 808 KEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEG 867
Query: 123 LEGPWERPPPLDESERDGGSEDQVEDPALSEPGE 156
E E +E E +G E++ E E GE
Sbjct: 868 EEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGE 901
Score = 41.2 bits (95), Expect = 4e-04
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 68 EEDELGELRELGYPREEDEEEEEDDEEE----EEEEDSQAEVLKVIRQSAGQKTTCGQGL 123
EE E E RE G+ +E ++E EE EEE EEEE + E + ++ G++ G+ +
Sbjct: 708 EEQEQKE-REQGHQKERNQEMEEGGEEEHGEGEEEEGDREE--EEEKEGEGKEEGEGEEV 764
Query: 124 EGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSE 165
EG E+ + E G E++ E+ GEE + E
Sbjct: 765 EGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETEGRGE 806
Score = 40.8 bits (94), Expect = 6e-04
Identities = 34/101 (33%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
Query: 62 ENQASEEE-----DELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQK 116
E + EEE +E GE E EE E E ED E E EEE+ + E + + G++
Sbjct: 909 EGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEE 968
Query: 117 TTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEE 157
G+G EG E +E E +G E+ E+ GEE
Sbjct: 969 EGEGEGEEGEGEGEE--EEGEGEGEEEEGEEEGEEEGEGEE 1007
Score = 39.3 bits (90), Expect = 0.002
Identities = 32/106 (30%), Positives = 44/106 (41%), Gaps = 1/106 (0%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQ 121
E + E E+ GE E E +EEE E +EEE E E+ + E G+ G+
Sbjct: 813 EVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEGEEGEGEEEGE 872
Query: 122 GLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPG 167
EG E E E +G E + E+ E EE + E G
Sbjct: 873 EGEGEGEEEEGEGEGEEEGEGEGE-EEEGEGEGEEEGEGEGEEEEG 917
Score = 38.5 bits (88), Expect = 0.003
Identities = 32/110 (29%), Positives = 45/110 (40%), Gaps = 10/110 (9%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQ 121
E + EEE E E G E+E E E++ E E EE+ + EV + G+ G+
Sbjct: 978 EGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGE----GE 1033
Query: 122 GLEGPWERPPPLDESERDG------GSEDQVEDPALSEPGEEPQRPSPSE 165
G E E E E +G E++ E+ E GEE E
Sbjct: 1034 GEEEEGEEEGEEREKEGEGEENRRNREEEEEEEGKYQETGEEENERQDGE 1083
Score = 36.2 bits (82), Expect = 0.014
Identities = 35/104 (33%), Positives = 47/104 (45%), Gaps = 12/104 (11%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQ 121
E + E E E GE E EE+E EEE +EE E EE+ + E G++ G+
Sbjct: 971 EGEGEEGEGE-GEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGE---------GEEEEEGE 1020
Query: 122 GLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSE 165
+EG E E E + G E+ E E GEE +R E
Sbjct: 1021 -VEGEVEGEEGEGEGEEEEGEEEGEEREKEGE-GEENRRNREEE 1062
Score = 35.4 bits (80), Expect = 0.023
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Query: 63 NQASEE--EDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCG 120
NQ EE E+E GE E REE+EE+E + +EE E E+ + E K ++ G
Sbjct: 724 NQEMEEGGEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKE-EGERKKEERAG 782
Query: 121 QGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGE 156
+ +G E E E G ++ E+ E GE
Sbjct: 783 KEEKGEEEGDQGEGEEEETEGRGEEKEEGGEVEGGE 818
Score = 33.9 bits (76), Expect = 0.067
Identities = 27/115 (23%), Positives = 50/115 (43%), Gaps = 9/115 (7%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEE-------DDEEEEEEEDSQAEVLKVIRQSAG 114
E + E++ GE+ G +E E+EE + E++E E+ Q E + + +
Sbjct: 673 EREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGE 732
Query: 115 QKTTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGE--EPQRPSPSEPG 167
++ G+ EG E + ++ G ++VE E GE + +R E G
Sbjct: 733 EEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKG 787
Score = 33.5 bits (75), Expect = 0.088
Identities = 33/112 (29%), Positives = 43/112 (38%), Gaps = 11/112 (9%)
Query: 67 EEEDELGELRELGYPREEDEEEEE-----------DDEEEEEEEDSQAEVLKVIRQSAGQ 115
EEE E GE E G E + EEEE + EEEE E + + E + G+
Sbjct: 859 EEEGEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGE 918
Query: 116 KTTCGQGLEGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSEPG 167
+G EG E E E + G + E+ E EE E G
Sbjct: 919 GKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEG 970
Score = 33.1 bits (74), Expect = 0.12
Identities = 30/102 (29%), Positives = 45/102 (44%), Gaps = 9/102 (8%)
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEE---EEEEEDSQAEVLKVIRQSAGQKTTCGQGL 123
EEE+ GE E G E+ E E ++EE E EEE+ + E + G+ G+G
Sbjct: 958 EEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEGEEEEGEEE-----GEEEGEGEEEGEG- 1011
Query: 124 EGPWERPPPLDESERDGGSEDQVEDPALSEPGEEPQRPSPSE 165
EG E ++ E + E+ E GEE ++ E
Sbjct: 1012 EGEEEEEGEVEGEVEGEEGEGEGEEEEGEEEGEEREKEGEGE 1053
Score = 30.0 bits (66), Expect = 0.97
Identities = 40/153 (26%), Positives = 56/153 (36%), Gaps = 23/153 (15%)
Query: 7 EHSSPEEEASPHQRASGEGHHLKSKRPNPCAYTPPSLKAVQRIAESHLQSISNLNENQAS 66
E EEE + GEG + + K + E + E +
Sbjct: 831 EEGEGEEEEGEGEEEEGEGEEEEGEG-----------KGEEEGEEGEGEEEGEEGEGEGE 879
Query: 67 EEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGP 126
EEE E GE EE+ E E ++EE E E + + E + G+ G+ EG
Sbjct: 880 EEEGE-GE-------GEEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGE 931
Query: 127 WERPPPLDESERDG---GSEDQVEDPALSEPGE 156
E E E DG G E++ E E GE
Sbjct: 932 GEEEEGEGEGE-DGEGEGEEEEGEWEGEEEEGE 963
Score = 30.0 bits (66), Expect = 0.97
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 64 QASEEEDELGELRELGYPREEDEEEE---EDDEEEEEEEDSQAEVLKV 108
+ EE ++ GE E REE+EEEE ++ EEE E E KV
Sbjct: 1041 EEGEEREKEGEGEENRRNREEEEEEEGKYQETGEEENERQDGEEYKKV 1088
Score = 28.1 bits (61), Expect = 3.7
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 2/103 (1%)
Query: 67 EEEDELGEL-RELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEG 125
+EE E GE + G E E+E E+EE ++ E + R+ QK + EG
Sbjct: 671 DEEREKGEKDKGRGEMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEG 730
Query: 126 PWERPPPLDESERDGGSEDQVEDPALSE-PGEEPQRPSPSEPG 167
E +E E D E++ E E GEE + E G
Sbjct: 731 GEEEHGEGEEEEGDREEEEEKEGEGKEEGEGEEVEGEREKEEG 773
Score = 27.3 bits (59), Expect = 6.3
Identities = 35/144 (24%), Positives = 57/144 (39%), Gaps = 23/144 (15%)
Query: 44 KAVQRIAESHLQSISNLNENQASEEEDELGELRELGYPREE-----------------DE 86
K Q I E L + L EN S+E +E+ E++E ++ +
Sbjct: 524 KKQQTIGE--LTQDTALTENDDSDEYEEMSEMKEGKACKQHVSQGIFMTQPATTIEAFSD 581
Query: 87 EEEEDDEEEEEEEDSQAEVLKVIRQSAGQKTTCGQGLEGPWERPPPLDESERDGG--SED 144
EE E EE+E EDS+ ++ A ++ G G E+ L + D SE
Sbjct: 582 EEVEIPEEKEGAEDSKGNGIEEQEVEANEENVKVHG--GRKEKTEILSDDLTDKAEVSEG 639
Query: 145 QVEDPALSEPGEEPQRPSPSEPGT 168
+ + +E G E + E G+
Sbjct: 640 KAKSVGEAEDGPEGRGDGTCEEGS 663
Score = 26.9 bits (58), Expect = 8.3
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 62 ENQASEEEDELGELRELGYPREEDEEEEEDDEEEEEEEDSQAEVLKVIRQSAG 114
E + E+E E GE EE+EE + + EEE E E K + + G
Sbjct: 1042 EGEEREKEGE-GEENRRNREEEEEEEGKYQETGEEENERQDGEEYKKVSKIKG 1093
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.299 0.124 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,501,365
Number of Sequences: 37866
Number of extensions: 585818
Number of successful extensions: 21669
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 937
Number of HSP's successfully gapped in prelim test: 496
Number of HSP's that attempted gapping in prelim test: 4599
Number of HSP's gapped (non-prelim): 6518
length of query: 168
length of database: 18,247,518
effective HSP length: 95
effective length of query: 73
effective length of database: 14,650,248
effective search space: 1069468104
effective search space used: 1069468104
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.