Guide to the Human Genome
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Name: LOC100130736 Sequence: fasta or formatted (365aa) NCBI GI: 239750785
Description:

PREDICTED: similar to tubulin, beta 5

Referenced in:

Tubulins and Microtubules

Other entries for this name:
alt prot [198aa] PREDICTED: similar to hCG1647990
alt mRNA [365aa] PREDICTED: similar to tubulin, beta 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         24           2
 C cysteine            2.5          9           1
 D aspartate           4.1         15           1
 E glutamate           7.1         26           2
 F phenylalanine       4.7         17           2
 G glycine             6.0         22           1
 H histidine           3.8         14           1
 I isoleucine          3.8         14           1
 K lysine              4.1         15           1
 L leucine             7.9         29           2
 M methionine          6.0         22           2
 N asparagine          4.4         16           2
 P proline             6.3         23           2
 Q glutamine           4.9         18           2
 R arginine            2.7         10           1
 S serine              8.2         30           2
 T threonine           7.9         29           2
 V valine              5.5         20           1
 W tryptophan          1.1          4           1
 X unknown             0.5          2           1
 Y tyrosine            1.6          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to tubulin, beta 5 
LOC100130736          1.000   PREDICTED: similar to tubulin, beta 5 
TUBB                  0.537   tubulin, beta 
TUBB2B                0.531   tubulin, beta 2B 
TUBB2A                0.530   tubulin, beta 2 
TUBB2C                0.530   tubulin, beta, 2 
TUBB4                 0.527   tubulin, beta 4 
TUBB3                 0.512   tubulin, beta, 4 
TUBB6                 0.509   tubulin, beta 6 
TUBB8                 0.488   tubulin, beta 8 
TUBB4Q                0.484   tubulin, beta polypeptide 4, member Q 
TUBB1                 0.448   beta tubulin 1, class VI 
LOC100130736          0.381   PREDICTED: similar to hCG1647990 
TUBA1C                0.153   tubulin alpha 6 
TUBA1B                0.151   tubulin, alpha, ubiquitous 
TUBA1A                0.148   tubulin, alpha 1a 
TUBA4A                0.148   tubulin, alpha 4a 
TUBA3D                0.146   tubulin, alpha 3d 
TUBA3C                0.146   tubulin, alpha 3c 
TUBA3E                0.141   tubulin, alpha 3e 
TUBA8                 0.139   tubulin, alpha 8 
TUBAL3                0.137   tubulin, alpha-like 3 
TUBG2                 0.121   tubulin, gamma 2 
TUBG1                 0.117   tubulin, gamma 1 
LOC442434             0.107   PREDICTED: similar to hCG1784562 
LOC442434             0.107   PREDICTED: similar to hCG1784562 
LOC442434             0.107   PREDICTED: similar to hCG1784562 
TUBE1                 0.093   tubulin, epsilon 1 
LOC100292044          0.036   PREDICTED: similar to hCG1642465 
TUBD1                 0.031   delta-tubulin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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