Guide to the Human Genome
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Name: WDR20 Sequence: fasta or formatted (508aa) NCBI GI: 31317278
Description:

WD repeat domain 20 isoform 3

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [581aa] WD repeat domain 20 isoform 1
alt prot [445aa] WD repeat domain 20 isoform 4
alt prot [569aa] WD repeat domain 20 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         21           1
 C cysteine            2.8         14           1
 D aspartate           5.3         27           2
 E glutamate           4.9         25           2
 F phenylalanine       4.9         25           1
 G glycine             8.1         41           3
 H histidine           3.7         19           2
 I isoleucine          2.6         13           1
 K lysine              5.7         29           2
 L leucine             8.5         43           2
 M methionine          1.8          9           1
 N asparagine          4.9         25           1
 P proline             5.7         29           3
 Q glutamine           2.4         12           1
 R arginine            5.5         28           1
 S serine             10.4         53           2
 T threonine           6.9         35           2
 V valine              8.1         41           2
 W tryptophan          1.4          7           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 20 isoform 3 
WDR20                 0.965   WD repeat domain 20 isoform 2 
WDR20                 0.955   WD repeat domain 20 isoform 1 
WDR20                 0.835   WD repeat domain 20 isoform 4 
DMWD                  0.479   dystrophia myotonica-containing WD repeat motif prot...
WDR61                 0.033   WD repeat domain 61 
NLE1                  0.030   Notchless gene homolog isoform a 
WDR51B                0.029   WD repeat domain 51B 
NLE1                  0.027   Notchless gene homolog isoform b 
TBL3                  0.027   transducin beta-like 3 
SMU1                  0.026   smu-1 suppressor of mec-8 and unc-52 homolog 
WDR5                  0.025   WD repeat domain 5 
WDR5                  0.025   WD repeat domain 5 
APAF1                 0.025   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.025   apoptotic peptidase activating factor 1 isoform b [Ho...
GNB2L1                0.025   guanine nucleotide binding protein (G protein), beta ...
WDR1                  0.023   WD repeat-containing protein 1 isoform 2 
WDR1                  0.023   WD repeat-containing protein 1 isoform 1 
STRAP                 0.023   serine/threonine kinase receptor associated protein...
KATNB1                0.022   katanin p80 subunit B 1 
WDR38                 0.022   WD repeat domain 38 
WDSUB1                0.022   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.022   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.022   WD repeat, sterile alpha motif and U-box domain con...
TAF5L                 0.021   PCAF associated factor 65 beta isoform a 
WDR51A                0.021   WD repeat domain 51A isoform 3 
WDR51A                0.021   WD repeat domain 51A isoform 2 
WDR51A                0.021   WD repeat domain 51A isoform 1 
PAFAH1B1              0.020   platelet-activating factor acetylhydrolase, isoform I...
SNRNP40               0.020   WD repeat domain 57 (U5 snRNP specific) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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