Guide to the Human Genome
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Name: WDR20 Sequence: fasta or formatted (581aa) NCBI GI: 31317274
Description:

WD repeat domain 20 isoform 1

Referenced in:

WD Repeat Proteins

Other entries for this name:
alt prot [445aa] WD repeat domain 20 isoform 4
alt prot [508aa] WD repeat domain 20 isoform 3
alt prot [569aa] WD repeat domain 20 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.6         27           2
 C cysteine            2.6         15           1
 D aspartate           5.3         31           2
 E glutamate           5.0         29           2
 F phenylalanine       4.6         27           1
 G glycine             8.1         47           3
 H histidine           3.6         21           2
 I isoleucine          2.9         17           1
 K lysine              6.0         35           2
 L leucine             8.6         50           2
 M methionine          1.5          9           1
 N asparagine          4.5         26           1
 P proline             5.7         33           3
 Q glutamine           2.8         16           1
 R arginine            5.0         29           1
 S serine             10.8         63           2
 T threonine           7.1         41           2
 V valine              7.7         45           2
 W tryptophan          1.2          7           1
 Y tyrosine            2.2         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   WD repeat domain 20 isoform 1 
WDR20                 0.974   WD repeat domain 20 isoform 2 
WDR20                 0.839   WD repeat domain 20 isoform 3 
WDR20                 0.726   WD repeat domain 20 isoform 4 
DMWD                  0.522   dystrophia myotonica-containing WD repeat motif prot...
WDR61                 0.029   WD repeat domain 61 
NLE1                  0.026   Notchless gene homolog isoform a 
WDR51B                0.026   WD repeat domain 51B 
NLE1                  0.024   Notchless gene homolog isoform b 
TBL3                  0.024   transducin beta-like 3 
SMU1                  0.023   smu-1 suppressor of mec-8 and unc-52 homolog 
WDR5                  0.022   WD repeat domain 5 
WDR5                  0.022   WD repeat domain 5 
APAF1                 0.022   apoptotic peptidase activating factor 1 isoform d [H...
APAF1                 0.022   apoptotic peptidase activating factor 1 isoform b [Ho...
GNB2L1                0.022   guanine nucleotide binding protein (G protein), beta ...
WDR1                  0.021   WD repeat-containing protein 1 isoform 1 
WDR1                  0.021   WD repeat-containing protein 1 isoform 2 
STRAP                 0.021   serine/threonine kinase receptor associated protein...
KATNB1                0.020   katanin p80 subunit B 1 
WDR38                 0.020   WD repeat domain 38 
WDSUB1                0.020   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.020   WD repeat, sterile alpha motif and U-box domain con...
WDSUB1                0.020   WD repeat, sterile alpha motif and U-box domain con...
TAF5L                 0.019   PCAF associated factor 65 beta isoform a 
WDR51A                0.019   WD repeat domain 51A isoform 3 
WDR51A                0.019   WD repeat domain 51A isoform 2 
WDR51A                0.019   WD repeat domain 51A isoform 1 
PWP2                  0.019   PWP2 periodic tryptophan protein homolog 
PAFAH1B1              0.018   platelet-activating factor acetylhydrolase, isoform I...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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