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Search of human proteins with 31077198
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12)
isoform b [Homo sapiens]
(251 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isof... 524 e-149
gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isof... 524 e-149
gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isof... 513 e-146
gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo sapi... 151 5e-37
gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens] 75 4e-14
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 66 3e-11
gi|9558733 transformer-2 alpha [Homo sapiens] 62 6e-10
gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo sa... 60 2e-09
gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens] 59 5e-09
gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2, ... 54 1e-07
gi|226497734 RNA binding motif protein 19 [Homo sapiens] 54 1e-07
gi|226497654 RNA binding motif protein 19 [Homo sapiens] 54 1e-07
gi|226497574 RNA binding motif protein 19 [Homo sapiens] 54 1e-07
gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens] 54 1e-07
gi|55956788 nucleolin [Homo sapiens] 54 2e-07
gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofo... 53 3e-07
gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isofor... 53 3e-07
gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens] 53 3e-07
gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens] 52 4e-07
gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens] 52 4e-07
gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo sa... 52 6e-07
gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo sap... 52 6e-07
gi|239752336 PREDICTED: similar to RNA binding motif protein, X-... 51 8e-07
gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo ... 51 8e-07
gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens] 51 8e-07
gi|56699409 RNA binding motif protein, X-linked [Homo sapiens] 51 8e-07
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 51 1e-06
gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens] 50 1e-06
gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens] 50 1e-06
gi|5803137 RNA binding motif protein 3 [Homo sapiens] 50 2e-06
>gi|31077198 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
b [Homo sapiens]
Length = 251
Score = 524 bits (1349), Expect = e-149
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60
MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
Sbjct: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60
Query: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120
ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
Sbjct: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120
Query: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180
VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
Sbjct: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180
Query: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240
YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
Sbjct: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240
Query: 241 IKGREKKERGK 251
IKGREKKERGK
Sbjct: 241 IKGREKKERGK 251
>gi|31077200 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
b [Homo sapiens]
Length = 251
Score = 524 bits (1349), Expect = e-149
Identities = 251/251 (100%), Positives = 251/251 (100%)
Query: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60
MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV
Sbjct: 1 MKPANMNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFV 60
Query: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120
ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL
Sbjct: 61 ARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGL 120
Query: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180
VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL
Sbjct: 121 VIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDL 180
Query: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240
YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR
Sbjct: 181 YREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDR 240
Query: 241 IKGREKKERGK 251
IKGREKKERGK
Sbjct: 241 IKGREKKERGK 251
>gi|13027642 small nuclear ribonucleoprotein 35kDa (U11/U12) isoform
a [Homo sapiens]
Length = 246
Score = 513 bits (1322), Expect = e-146
Identities = 246/246 (100%), Positives = 246/246 (100%)
Query: 6 MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL 65
MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL
Sbjct: 1 MNDWMPIAKEYDPLKAGSIDGTDEDPHDRAVWRAMLARYVPNKGVIGDPLLTLFVARLNL 60
Query: 66 QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH 125
QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH
Sbjct: 61 QTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQH 120
Query: 126 EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK 185
EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK
Sbjct: 121 EIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPVVKNDLYREGK 180
Query: 186 RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE 245
RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE
Sbjct: 181 RERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGRE 240
Query: 246 KKERGK 251
KKERGK
Sbjct: 241 KKERGK 246
>gi|29568103 U1 small nuclear ribonucleoprotein 70 kDa [Homo
sapiens]
Length = 437
Score = 151 bits (382), Expect = 5e-37
Identities = 90/206 (43%), Positives = 120/206 (58%), Gaps = 9/206 (4%)
Query: 52 GDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVI 111
GD TLFVAR+N T E KL+ F YG I+R+ +V +G +GYAFIEY+ ER +
Sbjct: 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158
Query: 112 KAYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESG---QLRFGGRDRPFR 168
AY+ ADG ID + VD E RT+KGW PRRLGGGLGG + G +R GRD R
Sbjct: 159 SAYKHADGKKIDGRRVLVDVERGRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSR 218
Query: 169 ---KPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVW 225
+P P+ D R+ +RERRERSR R++ + R R R DR R R +++E R
Sbjct: 219 YDERPGPSPLPHRDRDRDRERERRERSRERDKERE-RRRSRSRDRRRRSRSRDKEERRRS 277
Query: 226 PD--NDWERERDFRDDRIKGREKKER 249
+ D +R+R R R + R ++ER
Sbjct: 278 RERSKDKDRDRKRRSSRSRERARRER 303
Score = 32.7 bits (73), Expect = 0.31
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 182 REGKRERRERSRS-RERHWDSRTRDRDHDRGREKRWQEREPTR 223
R+ RERR RS RER R RDRD DR RE + ER R
Sbjct: 348 RDRDRERRRSHRSERERR---RDRDRDRDRDREHKRGERGSER 387
Score = 32.0 bits (71), Expect = 0.52
Identities = 17/59 (28%), Positives = 30/59 (50%)
Query: 156 GQLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREK 214
G+L G D P K + + +R + RR+R R R+R + + +R +RGR++
Sbjct: 333 GELGPDGPDGPEEKGRDRDRERRRSHRSERERRRDRDRDRDRDREHKRGERGSERGRDE 391
Score = 31.6 bits (70), Expect = 0.68
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 182 REGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
R R RER R R+R R RDR+H RG + R+ R
Sbjct: 355 RRSHRSERERRRDRDR---DRDRDREHKRGERGSERGRDEAR 393
Score = 30.4 bits (67), Expect = 1.5
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 6/52 (11%)
Query: 200 DSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREKKERGK 251
+ + RDRD +R R R ERE R D D +R+RD R G ERG+
Sbjct: 344 EEKGRDRDRERRRSHR-SERERRR---DRDRDRDRDREHKR--GERGSERGR 389
>gi|20911035 peptidylprolyl isomerase-like 4 [Homo sapiens]
Length = 492
Score = 75.5 bits (184), Expect = 4e-14
Identities = 70/260 (26%), Positives = 113/260 (43%), Gaps = 38/260 (14%)
Query: 14 KEYDPLKAGSIDGTDEDPHDR-AVWRAMLARYVPN--KGVIGDPLLTLFVARLNLQTKED 70
+E D K S + +E ++ A +A+L V + I P LFV +LN T ++
Sbjct: 195 EEIDDFKGRSAEEVEEIKAEKEAKTQAILLEMVGDLPDADIKPPENVLFVCKLNPVTTDE 254
Query: 71 KLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDADGLVIDQHEIFVD 130
L+ +FSR+G IR ++RD TG S YAFIE+++E KA+ D ++ID I VD
Sbjct: 255 DLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAFFKMDNVLIDDRRIHVD 314
Query: 131 YELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPINLPV---------VKNDLY 181
+ W G GGK F ++ KP NL + K DL
Sbjct: 315 FSQSVAKVKW------KGKGGKYTKSD--FKEYEKEQDKPPNLVLKDKVKPKQDTKYDLI 366
Query: 182 REGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR---------------VWP 226
+ E+ E S+S H + + + H EK ++ P +
Sbjct: 367 LD---EQAEDSKSSHSHTSKKHKKKTHHCSEEKEDEDYMPIKNTNQDIYREMGFGHYEEE 423
Query: 227 DNDWERERDFRDDRIKGREK 246
++ WE+++ + DR + R +
Sbjct: 424 ESCWEKQKSEKRDRTQNRSR 443
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 65.9 bits (159), Expect = 3e-11
Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 28/176 (15%)
Query: 55 LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114
+ +L V L +T D L+ VF +YG + + + RD T S+G+AF+ + ++R A
Sbjct: 13 MTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAM 72
Query: 115 RDADGLVIDQHEIFVDY-------ELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPF 167
DG V+D E+ V + + +G PRR GGG +G R R
Sbjct: 73 DAMDGAVLDGRELRVQMARYGRPPDSHHSRRGPPPRRYGGG----------GYGRRSRSP 122
Query: 168 RKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
R+ R + R RSRSR R SR++ R R R + + R
Sbjct: 123 RR-----------RRRSRSRSRSRSRSRSRSRYSRSKSRSRTRSRSRSTSKSRSAR 167
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 61.6 bits (148), Expect = 6e-10
Identities = 53/167 (31%), Positives = 77/167 (46%), Gaps = 19/167 (11%)
Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
DP L V L+L T E L+EVFSRYG + + +V D TG S+G+AF+ ++ +
Sbjct: 116 DPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERIDDSKE 175
Query: 113 AYRDADGLVIDQHEIFVDYELERTLKGWIPRRL------------GGGLGGKKESGQLRF 160
A A+G+ +D I VDY + + P GGG GG G+ R
Sbjct: 176 AMERANGMELDGRRIRVDYSITKRAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGRRRD 235
Query: 161 GGRDRPFRKPINLPVVKNDLYREGKRE-----RRERSRSRERHWDSR 202
DR + + + ++ YR +R R RSRSR R + R
Sbjct: 236 SYYDRGYDRGYDR--YEDYDYRYRRRSPSPYYSRYRSRSRSRSYSPR 280
>gi|223890219 RNA binding motif protein, X-linked-like 3 [Homo
sapiens]
Length = 1067
Score = 59.7 bits (143), Expect = 2e-09
Identities = 37/115 (32%), Positives = 55/115 (47%), Gaps = 4/115 (3%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LF+ LNL+T E LK F +YG I ++ L++D T S+G+AF+ ++ A RD
Sbjct: 10 LFIGGLNLKTDEKALKAEFGKYGHIIKVFLMKDRKTNKSRGFAFVTFESPADAKAAARDM 69
Query: 118 DGLVIDQHEIFVDYELERTLKG--WIPRRLGGGLGGKKESGQLRFGGRDRPFRKP 170
+G +D I V ++ K W+P G G + GG P R P
Sbjct: 70 NGKYLDGKAIMVAQTIKPAFKSSRWVPPTPGS--GSRSRFSHRTRGGGSSPQRPP 122
>gi|15055543 splicing factor, arginine/serine-rich 2B [Homo sapiens]
Length = 282
Score = 58.5 bits (140), Expect = 5e-09
Identities = 53/197 (26%), Positives = 85/197 (43%), Gaps = 23/197 (11%)
Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
D ++TL V L +T D L+ VF +YG + + + R+ T +G+AF+ + + R
Sbjct: 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQD 70
Query: 113 AYRDADGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPFRKPIN 172
A DG +D E+ V ++ R + +PR G G+ G +G R R + +
Sbjct: 71 AEAAMDGAELDGRELRV--QVARYGRRDLPRSRQGEPRGRSRGG--GYGRRSRSYGR--- 123
Query: 173 LPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWER 232
R RR RSRSR S +R R R R R+ +R + + R
Sbjct: 124 ---------RSRSPRRRHRSRSR---GPSCSRSRSRSRYRGSRYSRSPYSR----SPYSR 167
Query: 233 ERDFRDDRIKGREKKER 249
R R + R ++ R
Sbjct: 168 SRYSRSPYSRSRYRESR 184
>gi|14149675 cleavage stimulation factor, 3' pre-RNA, subunit 2,
64kDa, tau variant [Homo sapiens]
Length = 616
Score = 54.3 bits (129), Expect = 1e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 55 LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114
L ++FV + + E++LK++FS G + RLV D TG KGY F EY+++ + A
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 115 RDADGLVIDQHEIFVD 130
R+ +G + VD
Sbjct: 75 RNLNGREFSGRALRVD 90
>gi|226497734 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110
P TLF+ LN T E+KLKEVFS+ G ++ + + S G+ F+EY++
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 111 IKAYRDADGLVIDQHEIFV 129
KA + G V+D H++ V
Sbjct: 788 QKALKQLQGHVVDGHKLEV 806
Score = 47.4 bits (111), Expect = 1e-05
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LFV L + E+ L+++FS+YG + L D +T KG+AFI + +KAY +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 118 DGLVIDQHEIFV 129
DG V + V
Sbjct: 464 DGQVFQGRMLHV 475
Score = 33.9 bits (76), Expect = 0.14
Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114
+ V + Q +++E+FS +G+++ +RL + + TG +G+ F+++ ++ +A+
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
>gi|226497654 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110
P TLF+ LN T E+KLKEVFS+ G ++ + + S G+ F+EY++
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 111 IKAYRDADGLVIDQHEIFV 129
KA + G V+D H++ V
Sbjct: 788 QKALKQLQGHVVDGHKLEV 806
Score = 47.4 bits (111), Expect = 1e-05
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LFV L + E+ L+++FS+YG + L D +T KG+AFI + +KAY +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 118 DGLVIDQHEIFV 129
DG V + V
Sbjct: 464 DGQVFQGRMLHV 475
Score = 33.9 bits (76), Expect = 0.14
Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114
+ V + Q +++E+FS +G+++ +RL + + TG +G+ F+++ ++ +A+
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
>gi|226497574 RNA binding motif protein 19 [Homo sapiens]
Length = 960
Score = 53.9 bits (128), Expect = 1e-07
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTG---FSKGYAFIEYKEERAV 110
P TLF+ LN T E+KLKEVFS+ G ++ + + S G+ F+EY++
Sbjct: 728 PGCTLFIKNLNFDTTEEKLKEVFSKVGTVKSCSISKKKNKAGVLLSMGFGFVEYRKPEQA 787
Query: 111 IKAYRDADGLVIDQHEIFV 129
KA + G V+D H++ V
Sbjct: 788 QKALKQLQGHVVDGHKLEV 806
Score = 47.4 bits (111), Expect = 1e-05
Identities = 25/72 (34%), Positives = 38/72 (52%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LFV L + E+ L+++FS+YG + L D +T KG+AFI + +KAY +
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEV 463
Query: 118 DGLVIDQHEIFV 129
DG V + V
Sbjct: 464 DGQVFQGRMLHV 475
Score = 33.9 bits (76), Expect = 0.14
Identities = 13/58 (22%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLV-TGFSKGYAFIEYKEERAVIKAY 114
+ V + Q +++E+FS +G+++ +RL + + TG +G+ F+++ ++ +A+
Sbjct: 834 ILVRNIPFQAHSREIRELFSTFGELKTVRLPKKMTGTGTHRGFGFVDFLTKQDAKRAF 891
>gi|4557493 cleavage stimulation factor subunit 2 [Homo sapiens]
Length = 577
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/76 (34%), Positives = 42/76 (55%)
Query: 55 LLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAY 114
L ++FV + + E++LK++FS G + RLV D TG KGY F EY+++ + A
Sbjct: 15 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 74
Query: 115 RDADGLVIDQHEIFVD 130
R+ +G + VD
Sbjct: 75 RNLNGREFSGRALRVD 90
>gi|55956788 nucleolin [Homo sapiens]
Length = 710
Score = 53.5 bits (127), Expect = 2e-07
Identities = 41/115 (35%), Positives = 59/115 (51%), Gaps = 6/115 (5%)
Query: 54 PLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKA 113
P TLFV L+ T E+ LKE F G +R R+V D TG SKG+ F+++ E A
Sbjct: 570 PSKTLFVKGLSEDTTEETLKESFD--GSVRA-RIVTDRETGSSKGFGFVDFNSEEDAKAA 626
Query: 114 YRDADGLVIDQHEIFVDYELERTLKGWIPRRLG-GGLGGK--KESGQLRFGGRDR 165
+ ID +++ +D+ + G+ R G GG GG+ G+ FGGR R
Sbjct: 627 KEAMEDGEIDGNKVTLDWAKPKGEGGFGGRGGGRGGFGGRGGGRGGRGGFGGRGR 681
Score = 42.7 bits (99), Expect = 3e-04
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRD 116
TL L + +D+LKEVF D +RLV G SKG A+IE+K E K + +
Sbjct: 394 TLLAKNLPYKVTQDELKEVFE---DAAEIRLVSK--DGKSKGIAYIEFKTEADAEKTFEE 448
Query: 117 ADGLVIDQHEIFVDYELER 135
G ID I + Y E+
Sbjct: 449 KQGTEIDGRSISLYYTGEK 467
Score = 31.2 bits (69), Expect = 0.89
Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEY 104
TL ++ L+ E+ L+EVF + I+ V G SKGYAFIE+
Sbjct: 487 TLVLSNLSYSATEETLQEVFEKATFIK----VPQNQNGKSKGYAFIEF 530
>gi|60279268 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform
b [Homo sapiens]
Length = 471
Score = 52.8 bits (125), Expect = 3e-07
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 44 YVPN--KGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 101
YVP V+ D LF+ L +D++KE+ + +G ++ LV+D TG SKGYAF
Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304
Query: 102 IEYKEERAVIKAYRDADGLVIDQHEIFV 129
EY + +A +G+ + ++ V
Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLV 332
Score = 32.0 bits (71), Expect = 0.52
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 187 ERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREK 246
ER+ +ER ++R R R H R R + + R +R +R RD R R++
Sbjct: 8 ERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR---------DRRNRDQRSASRDR 58
Query: 247 KERGK 251
+ R K
Sbjct: 59 RRRSK 63
Score = 31.2 bits (69), Expect = 0.89
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 167 FRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
F + +N + D ++ RSRSR+R SR+RDR R R++R R+ R
Sbjct: 7 FERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR---RNRDQRSASRDRRR 60
>gi|6005926 U2 (RNU2) small nuclear RNA auxiliary factor 2 isoform a
[Homo sapiens]
Length = 475
Score = 52.8 bits (125), Expect = 3e-07
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 44 YVPN--KGVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAF 101
YVP V+ D LF+ L +D++KE+ + +G ++ LV+D TG SKGYAF
Sbjct: 245 YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAF 304
Query: 102 IEYKEERAVIKAYRDADGLVIDQHEIFV 129
EY + +A +G+ + ++ V
Sbjct: 305 CEYVDINVTDQAIAGLNGMQLGDKKLLV 332
Score = 32.0 bits (71), Expect = 0.52
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 9/65 (13%)
Query: 187 ERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDNDWERERDFRDDRIKGREK 246
ER+ +ER ++R R R H R R + + R +R +R RD R R++
Sbjct: 8 ERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSR---------DRRNRDQRSASRDR 58
Query: 247 KERGK 251
+ R K
Sbjct: 59 RRRSK 63
Score = 31.2 bits (69), Expect = 0.89
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 167 FRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTR 223
F + +N + D ++ RSRSR+R SR+RDR R R++R R+ R
Sbjct: 7 FERQLNENKQERDKENRHRKRSHSRSRSRDRKRRSRSRDR---RNRDQRSASRDRRR 60
>gi|118600973 RNA binding motif protein, X-linked 2 [Homo sapiens]
Length = 322
Score = 52.8 bits (125), Expect = 3e-07
Identities = 49/202 (24%), Positives = 91/202 (45%), Gaps = 33/202 (16%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
+F+ L + E + VFS+YG+I + LVRD TG SKG+ F+ Y+++R+ I A +
Sbjct: 38 IFLGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTILAVDNF 97
Query: 118 DGLVIDQHEIFVDYELE-RTLKGW-----IPRRL-GGGLGGKKESGQLRFGGRD-RPFRK 169
+G+ I I VD+ R K + R+L G G + S L D +P +K
Sbjct: 98 NGIKIKGRTIRVDHVSNYRAPKDSEEIDDVTRQLQEKGCGARTPSPSLSESSEDEKPTKK 157
Query: 170 PINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWPDND 229
+++ K+E++++ + +E+ ++ Q +P+ P
Sbjct: 158 -----------HKKDKKEKKKKKKEKEK--------------ADREVQAEQPSSSSPRRK 192
Query: 230 WERERDFRDDRIKGREKKERGK 251
+E+D + + ER +
Sbjct: 193 TVKEKDDTGPKKHSSKNSERAQ 214
Score = 30.0 bits (66), Expect = 2.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 16/63 (25%)
Query: 182 REGKRERRERSRSRERH--W------------DSRTRDRDHDRGREKRWQEREPTRVWPD 227
RE K R+R RS + H W SR+RD+ H R +R +ERE + P
Sbjct: 260 REEKTRIRDRGRSSDAHSSWYNGRSEGRSYRSRSRSRDKSHRHKRARRSRERESSN--PS 317
Query: 228 NDW 230
+ W
Sbjct: 318 DRW 320
>gi|49355761 ELAV-like protein 3 isoform 1 [Homo sapiens]
Length = 367
Score = 52.4 bits (124), Expect = 4e-07
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 49 GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 108
G D L V L +D+ K +F GDI +LVRD +TG S GY F+ Y +
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 109 AVIKAYRDADGLVIDQHEIFVDY 131
KA +GL + I V Y
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSY 114
Score = 38.1 bits (87), Expect = 0.007
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
L+V+ L + +++++FS+YG I R++ D VTG S+G FI + + +A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 118 DG 119
+G
Sbjct: 187 NG 188
Score = 35.0 bits (79), Expect = 0.062
Identities = 17/81 (20%), Positives = 37/81 (45%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
+FV L+ + E L ++F +G + ++++RD T KG+ F+ A
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 118 DGLVIDQHEIFVDYELERTLK 138
+G + + + V ++ + K
Sbjct: 346 NGYRLGERVLQVSFKTSKQHK 366
>gi|49355765 ELAV-like protein 3 isoform 2 [Homo sapiens]
Length = 360
Score = 52.4 bits (124), Expect = 4e-07
Identities = 29/83 (34%), Positives = 38/83 (45%)
Query: 49 GVIGDPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEER 108
G D L V L +D+ K +F GDI +LVRD +TG S GY F+ Y +
Sbjct: 32 GATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPN 91
Query: 109 AVIKAYRDADGLVIDQHEIFVDY 131
KA +GL + I V Y
Sbjct: 92 DADKAINTLNGLKLQTKTIKVSY 114
Score = 38.1 bits (87), Expect = 0.007
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
L+V+ L + +++++FS+YG I R++ D VTG S+G FI + + +A +
Sbjct: 127 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 186
Query: 118 DG 119
+G
Sbjct: 187 NG 188
Score = 35.0 bits (79), Expect = 0.062
Identities = 17/81 (20%), Positives = 37/81 (45%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
+FV L+ + E L ++F +G + ++++RD T KG+ F+ A
Sbjct: 279 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 118 DGLVIDQHEIFVDYELERTLK 138
+G + + + V ++ + K
Sbjct: 339 NGYRLGERVLQVSFKTSKQHK 359
>gi|242117971 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 51.6 bits (122), Expect = 6e-07
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LF+ LN +T E L+ VF +YG I + L++D T S+G+AF+ ++ A RD
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 118 DGLVIDQHEIFVDY----ELERTLKG--------WIPRRLGGGLGG 151
+G +D I V+ ER G PR G G GG
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG 115
>gi|21361809 RNA binding motif protein, X-linked-like 1 [Homo
sapiens]
Length = 390
Score = 51.6 bits (122), Expect = 6e-07
Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 12/106 (11%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LF+ LN +T E L+ VF +YG I + L++D T S+G+AF+ ++ A RD
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 118 DGLVIDQHEIFVDY----ELERTLKG--------WIPRRLGGGLGG 151
+G +D I V+ ER G PR G G GG
Sbjct: 70 NGKSLDGKAIKVEQATKPSFERGRHGPPPPPRSRGPPRGFGAGRGG 115
>gi|239752336 PREDICTED: similar to RNA binding motif protein,
X-linked [Homo sapiens]
Length = 138
Score = 51.2 bits (121), Expect = 8e-07
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
D L F+ LN +T + L+ VF +YG I + L++D T S+G+AFI ++
Sbjct: 5 DRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKD 64
Query: 113 AYRDADGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151
A RD +G +D I V+ + + + PR L GG GG
Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGG 115
>gi|239746849 PREDICTED: hypothetical protein XP_002343863 [Homo
sapiens]
Length = 138
Score = 51.2 bits (121), Expect = 8e-07
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 12/111 (10%)
Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
D L F+ LN +T + L+ VF +YG I + L++D T S+G+AFI ++
Sbjct: 5 DRLGKFFIGGLNTETNKKALEAVFGKYGQIVEVHLMKDCETNKSRGFAFITFERPADAKD 64
Query: 113 AYRDADGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151
A RD +G +D I V+ + + + PR L GG GG
Sbjct: 65 AARDMNGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRVLRGGRGG 115
>gi|4759098 splicing factor, arginine/serine-rich 10 [Homo sapiens]
Length = 288
Score = 51.2 bits (121), Expect = 8e-07
Identities = 29/83 (34%), Positives = 47/83 (56%)
Query: 53 DPLLTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIK 112
DP L V L+L T E L+EVFS+YG I + +V D + S+G+AF+ ++ +
Sbjct: 115 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKE 174
Query: 113 AYRDADGLVIDQHEIFVDYELER 135
A A+G+ +D I VD+ + +
Sbjct: 175 AKERANGMELDGRRIRVDFSITK 197
>gi|56699409 RNA binding motif protein, X-linked [Homo sapiens]
Length = 391
Score = 51.2 bits (121), Expect = 8e-07
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 12/106 (11%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LF+ LN +T E L+ VF +YG I + L++D T S+G+AF+ ++ A RD
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 118 DGLVIDQHEIFVDYELERTLKG------------WIPRRLGGGLGG 151
+G +D I V+ + + + PR L GG GG
Sbjct: 70 NGKSLDGKAIKVEQATKPSFESGRRGPPPPPRSRGPPRGLRGGRGG 115
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 50.8 bits (120), Expect = 1e-06
Identities = 46/163 (28%), Positives = 79/163 (48%), Gaps = 34/163 (20%)
Query: 103 EYKEERAVIKAY-----RDADGLVIDQH-EIFVDYELERTLKGWIPRRLGGGLGGKKESG 156
E+ +E V + + RD V++ + + + DYE+ER +G G+ E+
Sbjct: 340 EFDKENEVFRDWNSRIPRDVRDTVLEPYADPYYDYEIERFWRG-----------GQYENF 388
Query: 157 QLRFGGRDRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRW 216
++++ + P+ N + + RE ++ RER R R+R + R R+R+ +R
Sbjct: 389 RVQYTETE-PYH---NYRERERERERENRQRERERERERDRERERRQRERERERE----- 439
Query: 217 QEREPTRVWPDNDWERERDFRDD-----RIKGREK---KERGK 251
ER+ R +WERER RD+ R + REK KE+GK
Sbjct: 440 HERDKERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGK 482
Score = 32.7 bits (73), Expect = 0.31
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 177 KNDLYREGKRERRERSRSRERHWDSRTRDRDHDRGREKRWQEREPTRVWP 226
+ D R+ ++E ER R++ D + RDRD ++ REK + +P P
Sbjct: 441 ERDKERQRRKEEWERERAKRDEKDRQHRDRDREKEREKEKGKPKPRSPQP 490
>gi|4757926 RNA binding motif protein 39 isoform b [Homo sapiens]
Length = 524
Score = 50.4 bits (119), Expect = 1e-06
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 56 LTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYR 115
+ L+V L+ ED L+ +F +G I ++L+ D TG SKGY FI + + KA
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 116 DADGLVIDQHEIFVDYELERT 136
+G + + V + ERT
Sbjct: 310 QLNGFELAGRPMKVGHVTERT 330
Score = 35.0 bits (79), Expect = 0.062
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAV 110
T+F +L + + L+E FS G +R +R++ D + SKG A++E+ + +V
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207
Score = 33.9 bits (76), Expect = 0.14
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 164 DRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWD-SRTRDRDHDRGRE-KRWQEREP 221
+ P++K N N K+ ++ +SRSR S++++R R RE K+ + RE
Sbjct: 12 EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71
Query: 222 TRVWPDNDWERERDFRDDRIKGREKKERGK 251
R R ++ R R + R+++ RG+
Sbjct: 72 KR-------SRSKERRRSRSRSRDRRFRGR 94
>gi|35493811 RNA binding motif protein 39 isoform a [Homo sapiens]
Length = 530
Score = 50.4 bits (119), Expect = 1e-06
Identities = 26/81 (32%), Positives = 41/81 (50%)
Query: 56 LTLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYR 115
+ L+V L+ ED L+ +F +G I ++L+ D TG SKGY FI + + KA
Sbjct: 250 MRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALE 309
Query: 116 DADGLVIDQHEIFVDYELERT 136
+G + + V + ERT
Sbjct: 310 QLNGFELAGRPMKVGHVTERT 330
Score = 35.0 bits (79), Expect = 0.062
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 57 TLFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAV 110
T+F +L + + L+E FS G +R +R++ D + SKG A++E+ + +V
Sbjct: 154 TVFCMQLAARIRPRDLEEFFSTVGKVRDVRMISDRNSRRSKGIAYVEFVDVSSV 207
Score = 33.9 bits (76), Expect = 0.14
Identities = 24/90 (26%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 164 DRPFRKPINLPVVKNDLYREGKRERRERSRSRERHWD-SRTRDRDHDRGRE-KRWQEREP 221
+ P++K N N K+ ++ +SRSR S++++R R RE K+ + RE
Sbjct: 12 EAPYKKDENKLSSANGHEERSKKRKKSKSRSRSHERKRSKSKERKRSRDRERKKSKSRER 71
Query: 222 TRVWPDNDWERERDFRDDRIKGREKKERGK 251
R R ++ R R + R+++ RG+
Sbjct: 72 KR-------SRSKERRRSRSRSRDRRFRGR 94
>gi|5803137 RNA binding motif protein 3 [Homo sapiens]
Length = 157
Score = 49.7 bits (117), Expect = 2e-06
Identities = 34/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 58 LFVARLNLQTKEDKLKEVFSRYGDIRRLRLVRDLVTGFSKGYAFIEYKEERAVIKAYRDA 117
LFV LN T E L++ FS +G I + +V+D T S+G+ FI + A R
Sbjct: 8 LFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASVAMRAM 67
Query: 118 DGLVIDQHEIFVDYELERTLKGWIPRRLGGGLGGKKESGQLRFGGRDRPF 167
+G +D +I VD+ ++ +G GGG G GG D+ +
Sbjct: 68 NGESLDGRQIRVDH-AGKSARG----TRGGGFGAHGRGRSYSRGGGDQGY 112
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.436
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,234,742
Number of Sequences: 37866
Number of extensions: 490851
Number of successful extensions: 4778
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 158
Number of HSP's that attempted gapping in prelim test: 1959
Number of HSP's gapped (non-prelim): 1708
length of query: 251
length of database: 18,247,518
effective HSP length: 100
effective length of query: 151
effective length of database: 14,460,918
effective search space: 2183598618
effective search space used: 2183598618
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.