Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 30581111
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo
sapiens]
(426 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo ... 849 0.0
gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo ... 786 0.0
gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo ... 726 0.0
gi|30581113 minor histocompatibility antigen 13 isoform 4 [Homo ... 240 2e-63
gi|33413418 signal peptide peptidase 3 [Homo sapiens] 110 2e-24
gi|21314755 signal peptide peptidase-like 2A [Homo sapiens] 100 3e-21
gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo sap... 93 5e-19
gi|116734691 signal peptide peptidase-like 2B isoform 3 [Homo sa... 86 8e-17
gi|38524591 intramembrane protease 5 [Homo sapiens] 70 4e-12
gi|156105681 presenilin 2 isoform 2 [Homo sapiens] 33 0.38
gi|156105679 presenilin 2 isoform 1 [Homo sapiens] 33 0.38
gi|4506163 presenilin 1 isoform I-467 [Homo sapiens] 32 1.1
gi|195947397 presenilin 1 isoform I-463 [Homo sapiens] 32 1.1
gi|91208420 bassoon protein [Homo sapiens] 32 1.4
gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens] 31 1.9
gi|4826730 FK506 binding protein 12-rapamycin associated protein... 31 2.4
gi|17941285 solute carrier family 5 (sodium/glucose cotransporte... 31 2.4
gi|46276868 hypothetical protein LOC9710 [Homo sapiens] 31 2.4
gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens] 30 3.2
gi|87299628 biorientation of chromosomes in cell division 1-like... 30 4.2
gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens] 30 4.2
gi|203098098 shroom family member 3 protein [Homo sapiens] 30 5.5
gi|119392077 Rap guanine nucleotide exchange factor (GEF) 5 [Hom... 29 7.1
gi|34996489 pleckstrin homology domain interacting protein [Homo... 29 9.3
gi|21704281 junctophilin 2 isoform 1 [Homo sapiens] 29 9.3
gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens] 29 9.3
>gi|30581111 minor histocompatibility antigen 13 isoform 3 [Homo
sapiens]
Length = 426
Score = 849 bits (2193), Expect = 0.0
Identities = 426/426 (100%), Positives = 426/426 (100%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
Sbjct: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
Query: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
Sbjct: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
Query: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
Sbjct: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
Query: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 360
GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 360
Query: 361 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKG 420
HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKG
Sbjct: 361 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKG 420
Query: 421 LEKKEK 426
LEKKEK
Sbjct: 421 LEKKEK 426
>gi|30581109 minor histocompatibility antigen 13 isoform 2 [Homo
sapiens]
Length = 394
Score = 786 bits (2030), Expect = 0.0
Identities = 393/394 (99%), Positives = 394/394 (100%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
Sbjct: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
Query: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
Sbjct: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
Query: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
Sbjct: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
Query: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 360
GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 360
Query: 361 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAI 394
HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSA+
Sbjct: 361 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAM 394
>gi|23308607 minor histocompatibility antigen 13 isoform 1 [Homo
sapiens]
Length = 377
Score = 726 bits (1875), Expect = 0.0
Identities = 376/426 (88%), Positives = 376/426 (88%), Gaps = 49/426 (11%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK
Sbjct: 121 ISPFMNKFFPASFPNRQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRK 180
Query: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI
Sbjct: 181 HWIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVFGTNVMVTVAKSFEAPI 240
Query: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF
Sbjct: 241 KLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIF 300
Query: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRLT 360
GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYE S
Sbjct: 301 GLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEES----------- 349
Query: 361 HFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASASKG 420
NPKDPAAVTESKEGTEASASKG
Sbjct: 350 --------------------------------------NPKDPAAVTESKEGTEASASKG 371
Query: 421 LEKKEK 426
LEKKEK
Sbjct: 372 LEKKEK 377
>gi|30581113 minor histocompatibility antigen 13 isoform 4 [Homo
sapiens]
Length = 143
Score = 240 bits (613), Expect = 2e-63
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG
Sbjct: 1 MDSALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARG 60
Query: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT
Sbjct: 61 KNASDMPETITSRDAARFPIIASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHT 120
Query: 121 I 121
I
Sbjct: 121 I 121
>gi|33413418 signal peptide peptidase 3 [Homo sapiens]
Length = 384
Score = 110 bits (275), Expect = 2e-24
Identities = 98/378 (25%), Positives = 161/378 (42%), Gaps = 97/378 (25%)
Query: 38 SLLLMALLPIFFGALRSVRCA-----------------RGKNASDMPETITSRDAARFPI 80
S L+++L I +G+ RS+ G + ++ +TI S A PI
Sbjct: 19 STFLISILLIVYGSFRSLNMDFENQDKEKDSNSSSGSFNGNSTNNSIQTIDSTQALFLPI 78
Query: 81 IASCTLLGLYLFFKIFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPNRQYQL 140
AS +LL ++ FF + + ++ ++ VL +A + + P Q
Sbjct: 79 GASVSLLVMFFFF-----DSVQVVFTICTAVLATIAFAFLLLPMC-------------QY 120
Query: 141 LFTQGSGENKEEIINY----EFDTKDLVCLGLSSIVGVWYLLRKHWIANNLFGLAFSLNG 196
L S +NK I++ F +L+ LS ++ + ++L HW+ + + +
Sbjct: 121 LTRPCSPQNK---ISFGCCGRFTAAELLSFSLSVMLVLIWVLTGHWLLMDALAMGLCVAM 177
Query: 197 VELLHLNNVSTGCILLGGLFIYDVFWV------FGTNVMVTVAKS--------------- 235
+ + L ++ C+LL GL IYDVFWV F +NVMV VA
Sbjct: 178 IAFVRLPSLKVSCLLLSGLLIYDVFWVFFSAYIFNSNVMVKVATQPADNPLDVLSRKLHL 237
Query: 236 ----------FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFD----- 280
P KLVFP ++F+MLG+GD+V+PG+ + +LR+D
Sbjct: 238 GPNVGRDVPRLSLPGKLVFPSS------TGSHFSMLGIGDIVMPGLLLCFVLRYDNYKKQ 291
Query: 281 -------------ISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACI 327
IS + +YF+ + Y GL I + AQPALLYLVP +
Sbjct: 292 ASGDSCGAPGPANISGRMQKVSYFHCTLIGYFVGLLTATVASRIHRAAQPALLYLVPFTL 351
Query: 328 GFPVLVALAKGEVTEMFS 345
+ +A KG++ M+S
Sbjct: 352 LPLLTMAYLKGDLRRMWS 369
>gi|21314755 signal peptide peptidase-like 2A [Homo sapiens]
Length = 520
Score = 100 bits (248), Expect = 3e-21
Identities = 86/313 (27%), Positives = 148/313 (47%), Gaps = 47/313 (15%)
Query: 78 FPIIASCTLLGLYLFFK--IFSQEYINLLLSMYFFVLGILALSHTISPFMNKFFPASFPN 135
F +I ++ LY F+K ++ I + S + AL H I P+ N
Sbjct: 226 FVVICCVMMVLLYFFYKWLVYVMIAIFCIASAMSLYNCLAALIHKI-PYGQCTIACRGKN 284
Query: 136 RQYQLLFTQGSGENKEEIINYEFDTKDLVCLGLSSIVGVWYLLRKH----WIANNLFGLA 191
+ +L+F G +C+ ++ VW + R WI ++ G+A
Sbjct: 285 MEVRLIFLSG------------------LCI---AVAVVWAVFRNEDRWAWILQDILGIA 323
Query: 192 FSLNGVELLHLNNVSTGCILLGGLFIYDVFWVF--------GTNVMVTVA-----KSFEA 238
F LN ++ L L N + ILLG L +YDVF+VF G ++MV +A + +
Sbjct: 324 FCLNLIKTLKLPNFKSCVILLGLLLLYDVFFVFITPFITKNGESIMVELAAGPFGNNEKL 383
Query: 239 PIKLVFPQDLLEKGLEA--NNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFA 296
P+ + P+ + + ++LG GD+++PG+ IA RFD+ +++ Y+ +S
Sbjct: 384 PVVIRVPKLIYFSVMSVCLMPVSILGFGDIIVPGLLIAYCRRFDVQ-TGSSYIYYVSSTV 442
Query: 297 AYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYESSAEILPHT 356
AY G+ LT ++ + K QPALLYLVP + +VA + E+ + F +S +++ H
Sbjct: 443 AYAIGMILTFVVLVLMKKGQPALLYLVPCTLITASVVAWRRKEM-KKFWKGNSYQMMDHL 501
Query: 357 PRLTH--FPTVSG 367
T+ P +SG
Sbjct: 502 DCATNEENPVISG 514
>gi|41281782 signal peptide peptidase-like 2B isoform 2 [Homo
sapiens]
Length = 592
Score = 92.8 bits (229), Expect = 5e-19
Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 34/286 (11%)
Query: 163 LVCLGLSSIVGVWYLLRKH----WIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIY 218
L C+ +S VW + R W+ + G+AF L ++ + L +LL LF+Y
Sbjct: 302 LFCVAVSV---VWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLY 358
Query: 219 DVFWVF--------GTNVMVTVAKS-------FEAPIKLVFPQ-DLLEKGLEANNFAMLG 262
D+F+VF G+++MV VA + P+ L P+ + L F++LG
Sbjct: 359 DIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLG 418
Query: 263 LGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYL 322
GD+++PG+ +A RFDI ++ ++ YF AY GL +T + + + QPALLYL
Sbjct: 419 FGDILVPGLLVAYCHRFDIQVQ-SSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYL 477
Query: 323 VPACIGFPVLVALAKGEVTEMFSYESSAEILPHTPRL------THFPTVSGSPASLADSM 376
VP + VAL + E+ ++ A++LP +P P S +P S
Sbjct: 478 VPCTLVTSCAVALWRRELGVFWTGSGFAKVLPPSPWAPAPADGPQPPKDSATPLSPQPPS 537
Query: 377 QQKLAGPRRRRPQNPSAIYEESNP----KDPAAVTESKEGTEASAS 418
++ P S EE ++P + ES+ +A S
Sbjct: 538 EEPATSPWPAEQSPKSRTSEEMGAGAPMREPGSPAESEGRDQAQPS 583
>gi|116734691 signal peptide peptidase-like 2B isoform 3 [Homo
sapiens]
Length = 511
Score = 85.5 bits (210), Expect = 8e-17
Identities = 62/198 (31%), Positives = 100/198 (50%), Gaps = 24/198 (12%)
Query: 163 LVCLGLSSIVGVWYLLRKH----WIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIY 218
L C+ +S VW + R W+ + G+AF L ++ + L +LL LF+Y
Sbjct: 302 LFCVAVSV---VWGVFRNEDQWAWVLQDALGIAFCLYMLKTIRLPTFKACTLLLLVLFLY 358
Query: 219 DVFWVF--------GTNVMVTVAKS-------FEAPIKLVFPQ-DLLEKGLEANNFAMLG 262
D+F+VF G+++MV VA + P+ L P+ + L F++LG
Sbjct: 359 DIFFVFITPFLTKSGSSIMVEVATGPSDSATREKLPMVLKVPRLNSSPLALCDRPFSLLG 418
Query: 263 LGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYL 322
GD+++PG+ +A RFDI ++ ++ YF AY GL +T + + + QPALLYL
Sbjct: 419 FGDILVPGLLVAYCHRFDIQVQ-SSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYL 477
Query: 323 VPACIGFPVLVALAKGEV 340
VP + VAL + E+
Sbjct: 478 VPCTLVTSCAVALWRREL 495
>gi|38524591 intramembrane protease 5 [Homo sapiens]
Length = 684
Score = 70.1 bits (170), Expect = 4e-12
Identities = 50/204 (24%), Positives = 90/204 (44%), Gaps = 21/204 (10%)
Query: 169 SSIVGVWYLLRKH----WIANNLFGLAFSLNGVELLHLNNVSTGCILLGGLFIYDVFWVF 224
++++ W R W+ + G+++ L + + L + L L +DVF+VF
Sbjct: 332 ATVIIFWVAYRNEDRWAWLLQDTLGISYCLFVLHRVRLPTLKNCSSFLLALLAFDVFFVF 391
Query: 225 GTNVMVTVAKSFEAPIKLVFPQDLLEKGLE----------------ANNFAMLGLGDVVI 268
T +S A + L + + L + F++LG GD+V+
Sbjct: 392 VTPFFTKTGESIMAQVALGPAESSSHERLPMVLKVPRLRVSALTLCSQPFSILGFGDIVV 451
Query: 269 PGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIG 328
PG +A RFD+ + YF AY GL +T M + + QPALLYLV + +
Sbjct: 452 PGFLVAYCCRFDVQVCSR-QIYFVACTVAYAVGLLVTFMAMVLMQMGQPALLYLVSSTLL 510
Query: 329 FPVLVALAKGEVTEMFSYESSAEI 352
+ VA + E++ ++ + A++
Sbjct: 511 TSLAVAACRQELSLFWTGQGRAKM 534
>gi|156105681 presenilin 2 isoform 2 [Homo sapiens]
Length = 447
Score = 33.5 bits (75), Expect = 0.38
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 236 FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSF 295
FE P+ +P + LE+ E LGLGD IF ++L+ + F
Sbjct: 339 FEPPLT-GYPGEELEE--EEERGVKLGLGDF----IFYSVLVGKAAATGSGDWNTTLACF 391
Query: 296 AAYIFGLGLTIFIMHIFKHAQPAL 319
A + GL LT+ ++ +FK A PAL
Sbjct: 392 VAILIGLCLTLLLLAVFKKALPAL 415
>gi|156105679 presenilin 2 isoform 1 [Homo sapiens]
Length = 448
Score = 33.5 bits (75), Expect = 0.38
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 236 FEAPIKLVFPQDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSF 295
FE P+ +P + LE+ E LGLGD IF ++L+ + F
Sbjct: 340 FEPPLT-GYPGEELEE--EEERGVKLGLGDF----IFYSVLVGKAAATGSGDWNTTLACF 392
Query: 296 AAYIFGLGLTIFIMHIFKHAQPAL 319
A + GL LT+ ++ +FK A PAL
Sbjct: 393 VAILIGLCLTLLLLAVFKKALPAL 416
>gi|4506163 presenilin 1 isoform I-467 [Homo sapiens]
Length = 467
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 381 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 435
Query: 321 YLVPACIGFPVLVALAKGEVTEMF 344
P I F ++ A + + F
Sbjct: 436 ---PISITFGLVFYFATDYLVQPF 456
>gi|195947397 presenilin 1 isoform I-463 [Homo sapiens]
Length = 463
Score = 32.0 bits (71), Expect = 1.1
Identities = 26/84 (30%), Positives = 38/84 (45%), Gaps = 8/84 (9%)
Query: 261 LGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALL 320
LGLGD IF ++L+ + F A + GL LT+ ++ IFK A PAL
Sbjct: 377 LGLGDF----IFYSVLVGKASATASGDWNTTIACFVAILIGLCLTLLLLAIFKKALPAL- 431
Query: 321 YLVPACIGFPVLVALAKGEVTEMF 344
P I F ++ A + + F
Sbjct: 432 ---PISITFGLVFYFATDYLVQPF 452
>gi|91208420 bassoon protein [Homo sapiens]
Length = 3926
Score = 31.6 bits (70), Expect = 1.4
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 364 TVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGT 413
T G P + Q+ A P+RR P N + YEE P+ +A GT
Sbjct: 874 TQKGGPRPRPEPSQEPAALPKRRLPHNATTGYEELLPEGGSAEATDGSGT 923
>gi|162951873 ventral anterior homeobox 1 isoform a [Homo sapiens]
Length = 334
Score = 31.2 bits (69), Expect = 1.9
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 363 PTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAVTESKEGTEASA 417
P++ GS AS S +AG Q SA Y S+ +P + T +KEG E A
Sbjct: 278 PSLLGSVASRLSSAPLTMAGSLAGNLQELSARYLSSSAFEPYSRTNNKEGAEKKA 332
>gi|4826730 FK506 binding protein 12-rapamycin associated protein 1
[Homo sapiens]
Length = 2549
Score = 30.8 bits (68), Expect = 2.4
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 1/69 (1%)
Query: 3 SALSDPHNGSAEAGGPTNSTTRPPSTPEGIALAYGSLLLMALLPIFFGALRSVRCARGKN 62
+A ++ N +EA NS T P + + LLM +P G RS+ +RG N
Sbjct: 1841 TASTEGSNSESEAESTENSPT-PSPLQKKVTEDLSKTLLMYTVPAVQGFFRSISLSRGNN 1899
Query: 63 ASDMPETIT 71
D +T
Sbjct: 1900 LQDTLRVLT 1908
>gi|17941285 solute carrier family 5 (sodium/glucose cotransporter),
member 11 [Homo sapiens]
Length = 675
Score = 30.8 bits (68), Expect = 2.4
Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 20/91 (21%)
Query: 38 SLLLMA--LLPIFFGALRSVRCARGKNASDMPETITSR-DAARFPIIASCTLLGLYLFFK 94
S+L++A LPI+ + MPE + R R PII + L +Y+F K
Sbjct: 108 SVLMLAWIFLPIYIAG----------QVTTMPEYLRKRFGGIRIPIILAVLYLFIYIFTK 157
Query: 95 IFSQEYI-------NLLLSMYFFVLGILALS 118
I Y +L L +Y ++G+LA++
Sbjct: 158 ISVDMYAGAIFIQQSLHLDLYLAIVGLLAIT 188
>gi|46276868 hypothetical protein LOC9710 [Homo sapiens]
Length = 1070
Score = 30.8 bits (68), Expect = 2.4
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 351 EILPHTPRLTHFPTVSGSPASLADSMQQKLAGPRRRRPQNP 391
EILP P + P + A ++ +MQQK RRP NP
Sbjct: 833 EILPFDPAVGSDPEFARYVAGVSQAMQQKRQAQHGRRPGNP 873
>gi|195963431 transmembrane protein 201 isoform 1 [Homo sapiens]
Length = 642
Score = 30.4 bits (67), Expect = 3.2
Identities = 49/173 (28%), Positives = 68/173 (39%), Gaps = 30/173 (17%)
Query: 243 VFPQDLLEKGLEANNFAMLGLGDVVIPGIF---IALLLRFDISLKKNTHTYFYTSFAAYI 299
+ P+ + EK EA F VV G+ +A+LL I L++ F T A +
Sbjct: 277 LLPEHMAEKLCEAWAFGQSHQTGVVALGLLTCLLAMLLAGRIRLRRIDA--FCTCLWALL 334
Query: 300 FGLGLTIFIMHIFKHAQPALLYLVP-------ACIGFPVLVALAKGEVTEMFSYE----- 347
GL L H+ + A P+ L + +GF VA K F
Sbjct: 335 LGLHLAE--QHL-QAASPSWLDTLKFSTTSLCCLVGFTAAVATRKATGPRRFRPRRFFPG 391
Query: 348 SSAEILPHTPRLT-HFPTVSGSPAS---------LADSMQQKLAGPRRRRPQN 390
SA + P +P L P+V GSPAS L + QQ PRR P +
Sbjct: 392 DSAGLFPTSPSLAIPHPSVGGSPASLFIPSPPSFLPLANQQLFRSPRRTSPSS 444
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 30.0 bits (66), Expect = 4.2
Identities = 15/80 (18%), Positives = 36/80 (45%)
Query: 347 ESSAEILPHTPRLTHFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPAAV 406
E +P R H+ + P D + ++ +R+ P+ +E N +D +
Sbjct: 2762 EEEERHMPKRKRKQHYLSSEDEPDDNPDVLDSRIETAQRQCPETEPHDTKEENSRDLEEL 2821
Query: 407 TESKEGTEASASKGLEKKEK 426
++ T ++ S+ +E+K++
Sbjct: 2822 PKTSSETNSTTSRVMEEKDE 2841
>gi|156523246 proline-rich transmembrane protein 2 [Homo sapiens]
Length = 340
Score = 30.0 bits (66), Expect = 4.2
Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 16/102 (15%)
Query: 333 VALAKGEVTEMFSYESSAEILPHTPRLTHFPTVSGSPASLADSMQQKLAGPRRRRP-QNP 391
+A + E++EM E S ++ P H +G P LA Q P +P N
Sbjct: 1 MAASSSEISEMKGVEESPKVPGEGPG--HSEAETGPPQVLAGVPDQ----PEAPQPGPNT 54
Query: 392 SAIYEESNPK---------DPAAVTESKEGTEASASKGLEKK 424
+A +S PK PA +E+ + T+ S S G E K
Sbjct: 55 TAAPVDSGPKAGLAPETTETPAGASETAQATDLSLSPGGESK 96
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 29.6 bits (65), Expect = 5.5
Identities = 18/67 (26%), Positives = 25/67 (37%)
Query: 345 SYESSAEILPHTPRLTHFPTVSGSPASLADSMQQKLAGPRRRRPQNPSAIYEESNPKDPA 404
S E+SA PHTPR H T + + + RR P+ Y E +
Sbjct: 970 SPEASASASPHTPRERHSVTPAEGDLARPVPPAARRGARRRLTPEQKKRSYSEPEKMNEV 1029
Query: 405 AVTESKE 411
+ E E
Sbjct: 1030 GIVEEAE 1036
>gi|119392077 Rap guanine nucleotide exchange factor (GEF) 5 [Homo
sapiens]
Length = 730
Score = 29.3 bits (64), Expect = 7.1
Identities = 36/158 (22%), Positives = 63/158 (39%), Gaps = 24/158 (15%)
Query: 275 LLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQ------PALLYLVPACIG 328
LLL I L + H YF ++ Y F ++ F+ + LL LVP
Sbjct: 8 LLLDMGIMLSVDQHLYFQDTYVFYQFSSDECSYLYCEFEREEEWQNGVKLLLQLVPLIPA 67
Query: 329 FPVLVALAKGEVTEMFSYESSAEILPHTPRLTHFPTVSGSPASLADSMQQKLAGPRRRRP 388
+ L+ ++ + S ESS EIL L ++Q++LA +
Sbjct: 68 RGGICELSHQKIED--SEESSDEIL----------------VRLTSAVQRELAAVIALKA 109
Query: 389 QNPSAIYEESNPKDPAAVTESKEGTEASASKGLEKKEK 426
+ + +E N AVTE++ ++ A + +E+
Sbjct: 110 RKSAIEQDEENNDKHVAVTEAESVPDSQAGVMCKLQER 147
>gi|34996489 pleckstrin homology domain interacting protein [Homo
sapiens]
Length = 1821
Score = 28.9 bits (63), Expect = 9.3
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Query: 346 YESSAEILPHTPRLTHFPTVSGSPASLADSM-QQKLAGPRRRRPQNPSAIYE 396
++ SA H R P GSP S+AD++ +KL G R P+A+Y+
Sbjct: 120 WKGSALAALHCGRPPESPVNYGSPPSIADTLFSRKLNGKYRLERLVPTAVYQ 171
>gi|21704281 junctophilin 2 isoform 1 [Homo sapiens]
Length = 696
Score = 28.9 bits (63), Expect = 9.3
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 9/71 (12%)
Query: 363 PTVSGSPASLADSMQQKLAGPRRRRPQ---------NPSAIYEESNPKDPAAVTESKEGT 413
P VSGS ++ + L P R P+ P I ++ P+ A TE++ T
Sbjct: 587 PEVSGSESAPSSPATAPLQAPTLRGPEPARETPAKLEPKPIIPKAEPRAKARKTEARGLT 646
Query: 414 EASASKGLEKK 424
+A A K K+
Sbjct: 647 KAGAKKKARKE 657
>gi|50959191 rho guanine nucleotide exchange factor 5 [Homo sapiens]
Length = 1597
Score = 28.9 bits (63), Expect = 9.3
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 362 FPTVSGSPASLADSMQQKLAG-PRRRRPQNPSAIYEESNPKDPAAVTES 409
+ TVS SP +L+ Q RP +P +I +P +PA TES
Sbjct: 656 YSTVSASPTALSTLKQDSQESISNLERPSSPPSIQPWVSPHNPAFATES 704
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,936,346
Number of Sequences: 37866
Number of extensions: 709021
Number of successful extensions: 2507
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2473
Number of HSP's gapped (non-prelim): 35
length of query: 426
length of database: 18,247,518
effective HSP length: 105
effective length of query: 321
effective length of database: 14,271,588
effective search space: 4581179748
effective search space used: 4581179748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.